Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_025110

Experiment: PM with butyrate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with butyrate aerobic in dark
5,454,415	+		TX73_025100	0.68	-0.8
5,454,444	+		TX73_025100	0.70	-0.4
5,454,453	+		TX73_025100	0.71	-1.5
5,454,458	+		TX73_025100	0.72	+0.6
5,454,466	-		TX73_025100	0.72	+0.3
5,454,466	-		TX73_025100	0.72	+0.1
5,454,466	-		TX73_025100	0.72	-1.1
5,454,471	-		TX73_025100	0.73	+0.2
5,454,492	+		TX73_025100	0.75	-0.6
5,454,514	+		TX73_025100	0.77	+0.6
5,454,522	-		TX73_025100	0.78	-0.3
5,454,527	+		TX73_025100	0.78	+0.1
5,454,577	-		TX73_025100	0.83	-0.6
5,454,610	+		TX73_025100	0.86	-0.4
5,454,642	+		TX73_025100	0.88	+0.1
5,454,642	+		TX73_025100	0.88	-0.7
5,454,642	+		TX73_025100	0.88	+0.9
5,454,642	+		TX73_025100	0.88	-0.3
5,454,642	+		TX73_025100	0.88	+0.3
5,454,642	+		TX73_025100	0.88	+0.3
5,454,643	-		TX73_025100	0.88	-0.1
5,454,644	+		TX73_025100	0.89	+0.2
5,454,650	-		TX73_025100	0.89	+2.6
5,454,650	-		TX73_025100	0.89	-0.1
5,454,660	-				+0.3
5,454,668	-				-0.3
5,454,670	-				+0.5
5,454,670	-				-0.0
5,454,730	+				-0.2
5,454,730	+				-0.2
5,454,730	+				+0.5
5,454,735	+				+0.3
5,454,738	-				+0.1
5,454,738	-				-0.8
5,454,743	-				+0.4
5,454,767	-				+0.2
5,454,843	-				+0.4
5,454,858	+				-1.6
5,454,858	+				-0.2
5,454,926	-				-0.0
5,454,934	+				+0.5
5,454,936	+				+0.8
5,454,942	-				-0.8
5,454,944	-				-0.2
5,454,944	-				-2.6
5,454,964	-				-0.0
5,454,969	+				+0.6
5,454,981	+				+0.5
5,455,012	+				-0.2
5,455,020	-				-0.4
5,455,027	-		TX73_025105	0.11	-0.2
5,455,041	-		TX73_025105	0.15	+0.2
5,455,075	+		TX73_025105	0.24	-0.6
5,455,080	-		TX73_025105	0.25	-0.1
5,455,092	-		TX73_025105	0.28	-0.3
5,455,124	+		TX73_025105	0.37	-0.7
5,455,124	+		TX73_025105	0.37	+0.1
5,455,132	-		TX73_025105	0.39	-0.1
5,455,137	+		TX73_025105	0.41	-1.0
5,455,137	-		TX73_025105	0.41	+0.6
5,455,140	-		TX73_025105	0.41	-0.3
5,455,145	-		TX73_025105	0.43	-0.1
5,455,184	-		TX73_025105	0.53	-0.2
5,455,237	+		TX73_025105	0.68	+0.1
5,455,245	-		TX73_025105	0.70	-0.4
5,455,374	+				-0.4
5,455,389	-				-0.4
5,455,403	-				-0.1
5,455,410	-				-0.2
5,455,429	-				+0.6
5,455,512	+		TX73_025110	0.15	-0.6
5,455,569	+		TX73_025110	0.24	+0.0
5,455,571	+		TX73_025110	0.24	+1.4
5,455,571	+		TX73_025110	0.24	-0.2
5,455,579	-		TX73_025110	0.25	-0.6
5,455,594	+		TX73_025110	0.27	+0.0
5,455,594	-		TX73_025110	0.27	+0.0
5,455,602	-		TX73_025110	0.28	-1.1
5,455,624	-		TX73_025110	0.32	-0.9
5,455,634	+		TX73_025110	0.33	+0.1
5,455,662	+		TX73_025110	0.37	-0.3
5,455,671	-		TX73_025110	0.39	+0.0
5,455,687	+		TX73_025110	0.41	+1.1
5,455,708	-		TX73_025110	0.44	+0.6
5,455,718	+		TX73_025110	0.46	-0.1
5,455,723	+		TX73_025110	0.46	-0.3
5,455,723	+		TX73_025110	0.46	+0.1
5,455,723	+		TX73_025110	0.46	-0.6
5,455,723	+		TX73_025110	0.46	+0.1
5,455,726	-		TX73_025110	0.47	-0.5
5,455,731	-		TX73_025110	0.48	+0.2
5,455,731	-		TX73_025110	0.48	-0.1
5,455,736	-		TX73_025110	0.48	-0.1
5,455,736	-		TX73_025110	0.48	-0.2
5,455,738	-		TX73_025110	0.49	-0.0
5,455,762	-		TX73_025110	0.52	-0.1
5,455,772	+		TX73_025110	0.54	-0.8
5,455,790	+		TX73_025110	0.56	-0.1
5,455,790	+		TX73_025110	0.56	+0.4
5,455,798	-		TX73_025110	0.58	+0.1
5,455,799	-		TX73_025110	0.58	-0.4
5,455,805	+		TX73_025110	0.59	+0.2
5,455,805	+		TX73_025110	0.59	-0.6
5,455,805	+		TX73_025110	0.59	+0.5
5,455,813	-		TX73_025110	0.60	+0.5
5,455,813	-		TX73_025110	0.60	-0.0
5,455,813	-		TX73_025110	0.60	-0.1
5,455,848	-		TX73_025110	0.65	+0.1
5,455,848	-		TX73_025110	0.65	-0.0
5,455,857	+		TX73_025110	0.66	-0.2
5,455,865	-		TX73_025110	0.68	-0.5
5,455,917	-		TX73_025110	0.75	-0.1
5,455,920	-		TX73_025110	0.76	-0.7
5,455,933	+		TX73_025110	0.78	-1.2
5,455,933	+		TX73_025110	0.78	+0.2
5,455,947	+		TX73_025110	0.80	+0.4
5,455,954	+		TX73_025110	0.81	-0.1
5,455,954	+		TX73_025110	0.81	-0.1
5,455,968	-		TX73_025110	0.83	+1.1
5,455,996	-		TX73_025110	0.87	-0.0
5,456,000	-		TX73_025110	0.88	-0.2
5,456,011	+		TX73_025110	0.89	-0.8
5,456,019	-				-0.3
5,456,032	+				+0.1
5,456,035	-				-0.5
5,456,041	+				+0.3
5,456,041	+				-0.4
5,456,051	+				+0.9
5,456,059	-				-1.0
5,456,064	-				-0.2
5,456,073	+				+0.7
5,456,079	-				-0.6
5,456,087	+				-0.1
5,456,095	-				-0.1
5,456,095	-				+1.0
5,456,095	-				-0.6
5,456,095	-				+0.1
5,456,100	-				-0.2
5,456,107	+				-0.1
5,456,136	-				+0.7
5,456,141	+				+0.3
5,456,141	+				+1.0
5,456,146	+				+0.5
5,456,146	+				+0.2
5,456,148	+				+0.1
5,456,171	+				+0.7
5,456,171	-				+0.5
5,456,174	-		TX73_025115	0.10	+0.2
5,456,181	+		TX73_025115	0.11	+0.1
5,456,189	-		TX73_025115	0.12	+0.1
5,456,204	-		TX73_025115	0.15	+1.3
5,456,206	+		TX73_025115	0.15	+0.0
5,456,212	-		TX73_025115	0.16	+0.5
5,456,237	+		TX73_025115	0.20	+0.1
5,456,239	+		TX73_025115	0.20	+0.6
5,456,265	+		TX73_025115	0.24	+0.1
5,456,280	-		TX73_025115	0.26	+0.7
5,456,282	-		TX73_025115	0.27	-0.4
5,456,285	-		TX73_025115	0.27	+0.6
5,456,294	+		TX73_025115	0.28	-0.0
5,456,318	+		TX73_025115	0.32	+1.3
5,456,384	-		TX73_025115	0.42	+0.4
5,456,384	-		TX73_025115	0.42	+1.2
5,456,411	-		TX73_025115	0.46	+0.2
5,456,417	+		TX73_025115	0.47	+1.3
5,456,434	-		TX73_025115	0.50	+0.5
5,456,439	+		TX73_025115	0.51	+0.5
5,456,439	+		TX73_025115	0.51	-0.1
5,456,444	+		TX73_025115	0.51	+0.6
5,456,447	-		TX73_025115	0.52	+0.2
5,456,447	-		TX73_025115	0.52	+0.5
5,456,447	-		TX73_025115	0.52	+1.2
5,456,452	-		TX73_025115	0.53	+0.1
5,456,452	-		TX73_025115	0.53	+1.2
5,456,497	+		TX73_025115	0.60	-0.4
5,456,500	-		TX73_025115	0.60	+0.7
5,456,502	+		TX73_025115	0.60	+0.5
5,456,502	+		TX73_025115	0.60	+0.4
5,456,502	+		TX73_025115	0.60	+0.6
5,456,502	+		TX73_025115	0.60	+0.3
5,456,510	-		TX73_025115	0.62	+0.6
5,456,510	-		TX73_025115	0.62	+0.1
5,456,520	+		TX73_025115	0.63	-0.5
5,456,525	-		TX73_025115	0.64	+0.3
5,456,525	-		TX73_025115	0.64	-0.3
5,456,556	+		TX73_025115	0.69	+0.3
5,456,591	-		TX73_025115	0.74	+1.0
5,456,637	+		TX73_025115	0.81	-0.1
5,456,660	+		TX73_025115	0.85	-0.0
5,456,665	+		TX73_025115	0.85	+1.0
5,456,666	+		TX73_025115	0.86	+0.5
5,456,666	+		TX73_025115	0.86	+0.2
5,456,674	-		TX73_025115	0.87	+0.1
5,456,674	-		TX73_025115	0.87	+0.0
5,456,685	+		TX73_025115	0.88	+0.3
5,456,743	-				+0.7
5,456,745	-				+0.3
5,456,748	+				-0.1
5,456,748	+				-0.0
5,456,748	+				+0.1
5,456,748	+				+0.1
5,456,748	+				-0.5
5,456,748	-				+0.4
5,456,755	-				+0.5
5,456,761	-				-0.1
5,456,798	-				+0.5
5,456,828	-				+0.2
5,456,851	-				-0.1
5,456,897	+				+0.2
5,456,909	-				+0.4
5,456,909	-				-0.2
5,456,911	+				-0.7
5,456,911	+				-0.3
5,456,916	+				-0.9
5,456,918	+				-0.9
5,456,919	-				+0.1
5,456,921	+				-0.8
5,456,924	-				+0.1
5,456,924	-				+0.1
5,456,926	-				+0.3
5,456,926	-				-0.1
5,456,929	-				-0.1
5,456,965	+		TX73_025120	0.12	-0.4
5,456,989	+		TX73_025120	0.16	+0.4
5,456,989	+		TX73_025120	0.16	-0.2
5,456,989	+		TX73_025120	0.16	+0.7
5,456,989	+		TX73_025120	0.16	-0.9
5,456,989	+		TX73_025120	0.16	-0.3
5,456,992	+		TX73_025120	0.16	-0.4
5,456,997	-		TX73_025120	0.17	+0.0
5,456,997	-		TX73_025120	0.17	-0.6
5,456,997	-		TX73_025120	0.17	-0.1
5,457,000	-		TX73_025120	0.17	-1.4
5,457,000	-		TX73_025120	0.17	-0.2
5,457,001	+		TX73_025120	0.18	+0.3
5,457,032	+		TX73_025120	0.22	-1.1
5,457,032	+		TX73_025120	0.22	-0.4
5,457,034	+		TX73_025120	0.23	-0.0
5,457,040	+		TX73_025120	0.23	+0.1
5,457,040	+		TX73_025120	0.23	+0.1
5,457,040	+		TX73_025120	0.23	-0.7
5,457,042	-		TX73_025120	0.24	+0.5
5,457,042	-		TX73_025120	0.24	+0.3
5,457,055	-		TX73_025120	0.26	-0.6
5,457,066	+		TX73_025120	0.27	-0.6
5,457,067	-		TX73_025120	0.28	+0.1
5,457,071	+		TX73_025120	0.28	+1.2