Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011580

Experiment: PM with butyrate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with butyrate aerobic in dark
2,538,982	+		TX73_011570	0.38	-1.3
2,538,996	+		TX73_011570	0.39	-0.7
2,538,996	+		TX73_011570	0.39	-1.7
2,539,000	-		TX73_011570	0.40	+0.4
2,539,000	-		TX73_011570	0.40	-0.4
2,539,014	+		TX73_011570	0.41	+0.3
2,539,014	+		TX73_011570	0.41	-2.0
2,539,022	-		TX73_011570	0.42	-0.5
2,539,022	-		TX73_011570	0.42	-0.5
2,539,022	-		TX73_011570	0.42	+0.1
2,539,028	+		TX73_011570	0.43	+0.2
2,539,036	-		TX73_011570	0.44	-0.7
2,539,062	-		TX73_011570	0.46	+0.2
2,539,136	+		TX73_011570	0.55	-0.3
2,539,138	-		TX73_011570	0.55	+0.0
2,539,155	-		TX73_011570	0.57	-0.1
2,539,157	+		TX73_011570	0.57	-0.5
2,539,157	+		TX73_011570	0.57	-1.0
2,539,159	+		TX73_011570	0.57	-0.2
2,539,165	-		TX73_011570	0.58	-0.5
2,539,167	+		TX73_011570	0.58	+0.0
2,539,176	-		TX73_011570	0.59	-1.4
2,539,212	-		TX73_011570	0.63	+0.1
2,539,212	-		TX73_011570	0.63	+0.8
2,539,212	-		TX73_011570	0.63	-0.7
2,539,221	-		TX73_011570	0.64	-1.5
2,539,221	-		TX73_011570	0.64	-1.2
2,539,286	+		TX73_011570	0.71	-0.2
2,539,291	+		TX73_011570	0.72	-0.7
2,539,294	-		TX73_011570	0.72	-0.6
2,539,294	-		TX73_011570	0.72	-0.2
2,539,299	-		TX73_011570	0.73	-0.7
2,539,299	-		TX73_011570	0.73	+0.3
2,539,304	-		TX73_011570	0.73	-0.2
2,539,315	-		TX73_011570	0.74	+0.1
2,539,340	+		TX73_011570	0.77	-1.3
2,539,340	+		TX73_011570	0.77	+0.4
2,539,382	+		TX73_011570	0.82	-1.9
2,539,382	+		TX73_011570	0.82	+0.6
2,539,390	-		TX73_011570	0.83	-0.6
2,539,390	-		TX73_011570	0.83	-1.3
2,539,390	-		TX73_011570	0.83	+0.3
2,539,397	+		TX73_011570	0.83	-0.7
2,539,411	+		TX73_011570	0.85	-0.0
2,539,426	-		TX73_011570	0.87	-1.0
2,539,426	-		TX73_011570	0.87	-0.7
2,539,432	-		TX73_011570	0.87	-0.5
2,539,449	+		TX73_011570	0.89	-0.5
2,539,457	-				+0.1
2,539,487	-				-0.7
2,539,522	-				-0.6
2,539,541	+				-0.5
2,539,541	-				-0.4
2,539,541	-				+0.1
2,539,551	-				-0.4
2,539,561	-				+2.1
2,539,600	+		TX73_011575	0.21	-1.3
2,539,610	+		TX73_011575	0.24	-0.9
2,539,618	+		TX73_011575	0.27	-0.1
2,539,618	-		TX73_011575	0.27	-1.4
2,539,625	+		TX73_011575	0.30	-0.3
2,539,626	-		TX73_011575	0.30	-0.8
2,539,642	+		TX73_011575	0.36	+0.8
2,539,647	+		TX73_011575	0.38	-3.0
2,539,647	+		TX73_011575	0.38	-0.6
2,539,647	+		TX73_011575	0.38	+0.2
2,539,650	-		TX73_011575	0.39	-0.4
2,539,650	-		TX73_011575	0.39	+0.4
2,539,650	-		TX73_011575	0.39	-0.2
2,539,650	-		TX73_011575	0.39	-2.2
2,539,655	-		TX73_011575	0.41	-0.9
2,539,688	+		TX73_011575	0.52	-0.7
2,539,706	-		TX73_011575	0.59	+0.2
2,539,708	+		TX73_011575	0.59	-0.2
2,539,708	+		TX73_011575	0.59	+0.1
2,539,756	-		TX73_011575	0.77	-0.4
2,539,771	+		TX73_011575	0.82	+0.4
2,539,773	-		TX73_011575	0.83	-1.1
2,539,804	+				-1.4
2,539,810	+				+0.6
2,539,813	-				-0.6
2,539,823	-				-0.2
2,539,823	-				-0.5
2,539,847	+				+0.0
2,539,928	+				+0.4
2,539,935	-				-0.9
2,539,966	-				+0.1
2,540,015	+				-0.3
2,540,015	+				-0.5
2,540,015	+				-0.8
2,540,016	+				+1.4
2,540,024	-				-0.5
2,540,029	-				-0.3
2,540,034	-		TX73_011580	0.10	-0.4
2,540,044	+		TX73_011580	0.12	-1.0
2,540,044	+		TX73_011580	0.12	-1.2
2,540,057	+		TX73_011580	0.14	-0.2
2,540,065	-		TX73_011580	0.16	-0.2
2,540,080	+		TX73_011580	0.18	-0.3
2,540,093	+		TX73_011580	0.21	-1.2
2,540,096	-		TX73_011580	0.21	-0.7
2,540,101	-		TX73_011580	0.22	-0.9
2,540,104	+		TX73_011580	0.23	-0.6
2,540,114	+		TX73_011580	0.24	-1.0
2,540,122	-		TX73_011580	0.26	+0.9
2,540,127	+		TX73_011580	0.27	-0.3
2,540,129	+		TX73_011580	0.27	-0.3
2,540,158	-		TX73_011580	0.32	-0.1
2,540,167	+		TX73_011580	0.34	-1.0
2,540,189	-		TX73_011580	0.38	-0.2
2,540,219	+		TX73_011580	0.43	-0.7
2,540,235	+		TX73_011580	0.46	+1.1
2,540,245	+		TX73_011580	0.48	+0.2
2,540,245	+		TX73_011580	0.48	-0.0
2,540,245	+		TX73_011580	0.48	-0.6
2,540,247	+		TX73_011580	0.48	+0.8
2,540,253	-		TX73_011580	0.49	-0.5
2,540,273	+		TX73_011580	0.52	+0.2
2,540,281	-		TX73_011580	0.54	-0.0
2,540,367	-		TX73_011580	0.69	+0.2
2,540,376	-		TX73_011580	0.71	-0.5
2,540,398	-		TX73_011580	0.75	-0.5
2,540,417	+		TX73_011580	0.78	-0.4
2,540,439	-		TX73_011580	0.82	+0.3
2,540,447	+		TX73_011580	0.83	+0.3
2,540,455	-		TX73_011580	0.85	-0.9
2,540,455	-		TX73_011580	0.85	-0.6
2,540,473	+		TX73_011580	0.88	-0.9
2,540,555	+				-0.5
2,540,563	-				-0.0
2,540,563	-				-0.3
2,540,563	-				-0.4
2,540,563	-				+0.5
2,540,574	+				+0.5
2,540,582	-				-0.8
2,540,582	-				-0.7
2,540,596	+				-1.1
2,540,609	+				-0.2
2,540,616	-				+0.1
2,540,661	-				+0.3
2,540,722	-				-0.1
2,540,750	+				+0.0
2,540,773	-				-1.2
2,540,807	-				+0.2
2,540,809	+				+0.6
2,540,817	-				-0.3
2,540,867	+				-0.2
2,540,877	+				-0.2
2,540,884	+				-1.2
2,540,885	-				-1.1
2,540,885	-				-0.1
2,540,892	-				-0.5
2,540,909	+				+0.3
2,540,924	+		TX73_011585	0.15	-0.6
2,540,926	+		TX73_011585	0.15	-0.2
2,540,928	+		TX73_011585	0.16	-0.3
2,540,928	+		TX73_011585	0.16	-0.4
2,540,936	-		TX73_011585	0.19	-0.5
2,540,955	+		TX73_011585	0.26	-0.8
2,540,963	-		TX73_011585	0.30	-0.0
2,540,963	-		TX73_011585	0.30	-0.2
2,540,963	-		TX73_011585	0.30	+0.1
2,540,974	+		TX73_011585	0.34	-0.2
2,541,029	+		TX73_011585	0.55	-0.7
2,541,039	+		TX73_011585	0.59	-0.2
2,541,047	-		TX73_011585	0.62	+0.0
2,541,047	-		TX73_011585	0.62	-0.2
2,541,049	+		TX73_011585	0.62	+0.3
2,541,063	+		TX73_011585	0.68	-1.1
2,541,085	+		TX73_011585	0.76	+0.5
2,541,095	-		TX73_011585	0.80	-1.0
2,541,101	+		TX73_011585	0.82	+0.3
2,541,110	+		TX73_011585	0.86	-1.0
2,541,119	-		TX73_011585	0.89	-0.7
2,541,154	-				-0.1
2,541,161	+				+0.8
2,541,161	+				-0.4
2,541,161	+				-0.2
2,541,169	-				-0.6
2,541,169	-				-0.1
2,541,237	-				-0.1
2,541,239	+				-0.3
2,541,270	-				-0.3
2,541,280	-				-0.3
2,541,287	-				+0.3
2,541,314	-				-0.4
2,541,316	+				-0.3
2,541,321	+				-0.4
2,541,324	-				-0.3
2,541,326	+				+0.1
2,541,331	+				-0.6
2,541,334	-				-0.9
2,541,362	+				+1.0
2,541,362	+				-0.3
2,541,362	+				+0.7
2,541,370	-		TX73_011590	0.12	+0.2
2,541,370	-		TX73_011590	0.12	+0.2
2,541,409	+		TX73_011590	0.28	-0.3
2,541,442	+		TX73_011590	0.41	-1.3
2,541,449	-		TX73_011590	0.44	-0.3
2,541,460	-		TX73_011590	0.49	-0.6
2,541,507	+		TX73_011590	0.68	-0.0
2,541,507	+		TX73_011590	0.68	-0.0
2,541,532	+		TX73_011590	0.78	+0.0
2,541,537	+		TX73_011590	0.80	-0.4
2,541,537	-		TX73_011590	0.80	+0.4