Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024785

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
5,382,281	+				+0.6
5,382,289	-				+0.1
5,382,290	+				+0.3
5,382,315	+				+1.7
5,382,323	-				-0.5
5,382,329	+				+0.1
5,382,331	-				-1.3
5,382,351	+				-0.2
5,382,360	-				-0.9
5,382,385	+		TX73_024780	0.11	-1.1
5,382,393	-		TX73_024780	0.11	-0.7
5,382,427	-		TX73_024780	0.15	+0.4
5,382,430	-		TX73_024780	0.15	+0.1
5,382,448	-		TX73_024780	0.17	-0.8
5,382,472	-		TX73_024780	0.20	+0.3
5,382,473	+		TX73_024780	0.20	-0.7
5,382,473	+		TX73_024780	0.20	-0.2
5,382,473	+		TX73_024780	0.20	+0.1
5,382,481	-		TX73_024780	0.20	+1.0
5,382,561	+		TX73_024780	0.29	-0.9
5,382,568	-		TX73_024780	0.29	+0.5
5,382,585	-		TX73_024780	0.31	-0.6
5,382,594	+		TX73_024780	0.32	-1.9
5,382,602	-		TX73_024780	0.33	+0.2
5,382,623	+		TX73_024780	0.35	-0.4
5,382,661	-		TX73_024780	0.39	-2.5
5,382,663	+		TX73_024780	0.39	-3.6
5,382,663	+		TX73_024780	0.39	-0.1
5,382,671	-		TX73_024780	0.40	-1.0
5,382,671	-		TX73_024780	0.40	-2.3
5,382,689	+		TX73_024780	0.42	+0.7
5,382,696	+		TX73_024780	0.43	-1.5
5,382,697	-		TX73_024780	0.43	-0.4
5,382,697	-		TX73_024780	0.43	-1.8
5,382,704	-		TX73_024780	0.43	-0.5
5,382,730	-		TX73_024780	0.46	-0.7
5,382,732	+		TX73_024780	0.46	+0.7
5,382,732	+		TX73_024780	0.46	+0.1
5,382,732	-		TX73_024780	0.46	+0.1
5,382,740	-		TX73_024780	0.47	-1.0
5,382,775	+		TX73_024780	0.51	-1.6
5,382,826	+		TX73_024780	0.56	-2.6
5,382,853	+		TX73_024780	0.59	+0.2
5,382,861	-		TX73_024780	0.60	+0.7
5,382,861	-		TX73_024780	0.60	-1.1
5,382,875	+		TX73_024780	0.61	+0.6
5,382,880	+		TX73_024780	0.62	-1.6
5,382,888	-		TX73_024780	0.62	-0.7
5,382,895	-		TX73_024780	0.63	-0.2
5,382,899	-		TX73_024780	0.64	-0.8
5,382,910	+		TX73_024780	0.65	-0.4
5,382,915	+		TX73_024780	0.65	+0.0
5,382,915	+		TX73_024780	0.65	-1.8
5,382,915	+		TX73_024780	0.65	+0.0
5,382,933	-		TX73_024780	0.67	+1.0
5,382,940	-		TX73_024780	0.68	-0.6
5,382,947	+		TX73_024780	0.69	+0.3
5,382,962	-		TX73_024780	0.70	+0.7
5,382,967	-		TX73_024780	0.71	+0.1
5,382,969	+		TX73_024780	0.71	+0.8
5,382,977	-		TX73_024780	0.72	-0.5
5,382,990	-		TX73_024780	0.73	-1.6
5,383,011	+		TX73_024780	0.75	-0.1
5,383,023	-		TX73_024780	0.76	-1.2
5,383,037	+		TX73_024780	0.78	+0.8
5,383,037	+		TX73_024780	0.78	-0.7
5,383,037	+		TX73_024780	0.78	+0.4
5,383,043	+		TX73_024780	0.78	+1.1
5,383,045	-		TX73_024780	0.79	+0.4
5,383,045	-		TX73_024780	0.79	-0.7
5,383,045	-		TX73_024780	0.79	+0.5
5,383,045	-		TX73_024780	0.79	-0.4
5,383,045	-		TX73_024780	0.79	-0.0
5,383,100	+		TX73_024780	0.84	+0.9
5,383,116	+		TX73_024780	0.86	+1.3
5,383,117	+		TX73_024780	0.86	-0.9
5,383,131	-		TX73_024780	0.88	+0.9
5,383,146	+		TX73_024780	0.89	+0.2
5,383,146	+		TX73_024780	0.89	-2.8
5,383,154	-		TX73_024780	0.90	+0.7
5,383,154	-		TX73_024780	0.90	-0.5
5,383,181	-				-0.0
5,383,191	-				-0.2
5,383,235	+				+1.4
5,383,235	+				-0.7
5,383,235	+				+0.1
5,383,236	+				+0.0
5,383,243	-				+0.2
5,383,245	-				-0.4
5,383,249	+				+0.4
5,383,249	+				+0.4
5,383,255	+				-0.2
5,383,257	-				+1.0
5,383,261	+				-0.9
5,383,261	+				-1.8
5,383,261	+				-0.8
5,383,261	+				-0.9
5,383,261	+				-0.7
5,383,261	+				-0.6
5,383,261	+				+0.7
5,383,261	+				-0.9
5,383,261	+				-0.4
5,383,268	+				-0.1
5,383,269	-				-1.2
5,383,269	-				+0.4
5,383,269	-				-0.2
5,383,269	-				-1.3
5,383,269	-				+1.5
5,383,269	-				-0.0
5,383,269	-				-0.6
5,383,279	-				-2.1
5,383,289	-				-1.7
5,383,329	+		TX73_024785	0.10	-0.6
5,383,341	-		TX73_024785	0.12	+0.4
5,383,347	-		TX73_024785	0.12	-0.1
5,383,361	+		TX73_024785	0.14	-0.1
5,383,366	+		TX73_024785	0.15	-0.1
5,383,374	-		TX73_024785	0.16	+0.8
5,383,394	+		TX73_024785	0.18	-1.2
5,383,409	+		TX73_024785	0.20	+0.1
5,383,430	+		TX73_024785	0.23	-1.0
5,383,436	+		TX73_024785	0.24	-0.0
5,383,446	-		TX73_024785	0.25	-1.9
5,383,491	-		TX73_024785	0.31	-0.6
5,383,503	-		TX73_024785	0.32	-1.3
5,383,507	+		TX73_024785	0.33	-0.6
5,383,518	-		TX73_024785	0.34	+1.0
5,383,530	+		TX73_024785	0.36	+0.1
5,383,535	+		TX73_024785	0.36	+0.5
5,383,571	+		TX73_024785	0.41	-1.3
5,383,572	+		TX73_024785	0.41	-0.6
5,383,575	-		TX73_024785	0.42	-0.4
5,383,579	-		TX73_024785	0.42	-0.1
5,383,580	-		TX73_024785	0.42	+0.3
5,383,601	-		TX73_024785	0.45	+0.1
5,383,616	+		TX73_024785	0.47	+0.3
5,383,624	-		TX73_024785	0.48	+0.2
5,383,642	-		TX73_024785	0.50	+1.7
5,383,646	+		TX73_024785	0.51	-0.6
5,383,651	+		TX73_024785	0.51	+1.3
5,383,659	-		TX73_024785	0.52	+0.4
5,383,665	+		TX73_024785	0.53	+0.3
5,383,669	-		TX73_024785	0.54	+0.1
5,383,716	+		TX73_024785	0.60	-1.0
5,383,716	+		TX73_024785	0.60	-0.6
5,383,738	-		TX73_024785	0.62	-0.5
5,383,768	+		TX73_024785	0.66	-0.2
5,383,779	+		TX73_024785	0.68	+1.2
5,383,784	+		TX73_024785	0.68	+0.2
5,383,802	-		TX73_024785	0.71	+0.3
5,383,841	+		TX73_024785	0.76	-1.2
5,383,845	-		TX73_024785	0.76	+1.4
5,383,858	+		TX73_024785	0.78	-2.7
5,383,860	+		TX73_024785	0.78	-0.6
5,383,866	-		TX73_024785	0.79	+0.1
5,383,866	-		TX73_024785	0.79	-0.7
5,383,868	-		TX73_024785	0.79	+0.4
5,383,879	+		TX73_024785	0.81	-0.3
5,383,879	+		TX73_024785	0.81	+0.6
5,383,879	+		TX73_024785	0.81	-0.6
5,383,894	-		TX73_024785	0.82	+0.1
5,383,915	+		TX73_024785	0.85	+0.7
5,383,916	+		TX73_024785	0.85	+0.5
5,383,919	-		TX73_024785	0.86	-0.7
5,383,924	-		TX73_024785	0.86	-1.8
5,383,926	+		TX73_024785	0.87	+0.0
5,383,930	+		TX73_024785	0.87	-0.2
5,383,934	-		TX73_024785	0.88	-1.4
5,383,946	+		TX73_024785	0.89	+0.7
5,383,951	+		TX73_024785	0.90	-0.9
5,383,966	-				-0.1
5,383,972	+				-0.3
5,383,980	-				+0.1
5,383,982	+				-0.7
5,384,025	+				+0.0
5,384,032	+				+0.6
5,384,067	+				+0.7
5,384,087	+				+0.3
5,384,097	-				+0.8
5,384,106	+				+0.3
5,384,113	+				+1.1
5,384,162	+		TX73_024790	0.11	-0.5
5,384,175	-		TX73_024790	0.12	+0.3
5,384,177	+		TX73_024790	0.12	-0.6
5,384,177	+		TX73_024790	0.12	-0.1
5,384,237	-		TX73_024790	0.17	-0.5
5,384,239	+		TX73_024790	0.17	-0.3
5,384,263	+		TX73_024790	0.19	-3.8
5,384,263	+		TX73_024790	0.19	+0.5
5,384,271	-		TX73_024790	0.19	+0.1
5,384,280	-		TX73_024790	0.20	+0.4
5,384,287	+		TX73_024790	0.21	+0.3
5,384,288	+		TX73_024790	0.21	+1.4
5,384,288	+		TX73_024790	0.21	+0.9
5,384,296	-		TX73_024790	0.21	+0.6
5,384,296	-		TX73_024790	0.21	+0.3
5,384,296	-		TX73_024790	0.21	-2.4
5,384,296	-		TX73_024790	0.21	+0.3
5,384,296	-		TX73_024790	0.21	+0.3
5,384,296	-		TX73_024790	0.21	+0.3
5,384,338	+		TX73_024790	0.25	-1.6
5,384,348	-		TX73_024790	0.25	+0.5
5,384,348	-		TX73_024790	0.25	+1.2
5,384,348	-		TX73_024790	0.25	-2.5
5,384,365	+		TX73_024790	0.27	+0.3
5,384,365	+		TX73_024790	0.27	+0.4
5,384,370	+		TX73_024790	0.27	+1.1
5,384,373	-		TX73_024790	0.27	-0.2
5,384,373	-		TX73_024790	0.27	-0.5
5,384,378	+		TX73_024790	0.28	-0.0
5,384,378	-		TX73_024790	0.28	-2.2
5,384,378	-		TX73_024790	0.28	+0.8
5,384,389	+		TX73_024790	0.29	+0.3
5,384,397	-		TX73_024790	0.29	-0.2
5,384,421	+		TX73_024790	0.31	-0.6
5,384,429	-		TX73_024790	0.32	+0.6
5,384,429	-		TX73_024790	0.32	+2.1
5,384,429	-		TX73_024790	0.32	-0.1
5,384,440	+		TX73_024790	0.33	+0.2
5,384,442	+		TX73_024790	0.33	+0.5
5,384,450	-		TX73_024790	0.33	-0.3
5,384,457	+		TX73_024790	0.34	+0.0
5,384,465	-		TX73_024790	0.35	-0.2
5,384,469	+		TX73_024790	0.35	-0.6
5,384,543	-		TX73_024790	0.41	-0.5
5,384,543	-		TX73_024790	0.41	+0.4
5,384,583	+		TX73_024790	0.44	-0.3
5,384,607	-		TX73_024790	0.46	+0.7
5,384,609	+		TX73_024790	0.46	+0.9
5,384,617	-		TX73_024790	0.47	+0.9
5,384,622	+		TX73_024790	0.47	+1.4
5,384,622	+		TX73_024790	0.47	-0.4
5,384,652	+		TX73_024790	0.49	-0.3
5,384,652	+		TX73_024790	0.49	-1.5
5,384,652	+		TX73_024790	0.49	-0.1
5,384,652	+		TX73_024790	0.49	+0.1
5,384,657	+		TX73_024790	0.50	+0.5
5,384,660	-		TX73_024790	0.50	-1.1
5,384,660	-		TX73_024790	0.50	-0.2
5,384,675	-		TX73_024790	0.51	+0.1
5,384,675	-		TX73_024790	0.51	-2.7
5,384,677	+		TX73_024790	0.51	+0.4
5,384,739	+		TX73_024790	0.56	+0.4
5,384,747	-		TX73_024790	0.57	+0.6
5,384,802	+		TX73_024790	0.61	+1.7
5,384,809	-		TX73_024790	0.62	+0.6
5,384,814	-		TX73_024790	0.62	+0.0
5,384,880	+		TX73_024790	0.67	+0.3
5,384,887	-		TX73_024790	0.68	+0.9
5,384,900	-		TX73_024790	0.69	+0.3
5,384,901	+		TX73_024790	0.69	+0.5
5,384,917	+		TX73_024790	0.70	-1.1
5,384,925	+		TX73_024790	0.71	+0.9
5,384,925	+		TX73_024790	0.71	-0.7
5,384,926	-		TX73_024790	0.71	+1.5
5,384,934	+		TX73_024790	0.72	+1.4
5,384,943	-		TX73_024790	0.72	+0.7
5,384,991	+		TX73_024790	0.76	-0.5
5,384,996	+		TX73_024790	0.77	+1.5
5,384,997	+		TX73_024790	0.77	-0.1