Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023435

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
5,093,031	-		TX73_023425	0.53	+0.0
5,093,031	-		TX73_023425	0.53	+0.3
5,093,056	+		TX73_023425	0.55	-0.9
5,093,084	+		TX73_023425	0.57	+0.1
5,093,128	+		TX73_023425	0.61	-0.8
5,093,160	+		TX73_023425	0.63	-0.1
5,093,168	-		TX73_023425	0.64	-0.7
5,093,193	+		TX73_023425	0.66	-1.1
5,093,200	+		TX73_023425	0.66	+0.7
5,093,266	+		TX73_023425	0.72	-0.1
5,093,266	+		TX73_023425	0.72	+0.4
5,093,271	-		TX73_023425	0.72	+0.4
5,093,274	-		TX73_023425	0.72	-0.2
5,093,303	+		TX73_023425	0.74	-1.3
5,093,311	-		TX73_023425	0.75	-0.1
5,093,311	-		TX73_023425	0.75	-0.3
5,093,369	+		TX73_023425	0.80	-0.6
5,093,369	+		TX73_023425	0.80	+0.5
5,093,438	-		TX73_023425	0.85	-0.1
5,093,450	-		TX73_023425	0.86	-0.0
5,093,451	-		TX73_023425	0.86	+0.8
5,093,474	-		TX73_023425	0.88	+1.8
5,093,482	+		TX73_023425	0.89	-1.2
5,093,485	-		TX73_023425	0.89	-1.0
5,093,489	-		TX73_023425	0.89	+0.1
5,093,490	-		TX73_023425	0.89	-0.2
5,093,490	-		TX73_023425	0.89	-0.6
5,093,490	-		TX73_023425	0.89	+0.4
5,093,490	-		TX73_023425	0.89	-0.6
5,093,563	+				+0.0
5,093,581	+				-0.0
5,093,594	-				-0.6
5,093,594	-				+0.3
5,093,599	-				-0.6
5,093,606	-				+0.2
5,093,620	+				-0.5
5,093,620	+				+0.3
5,093,620	+				+1.3
5,093,620	+				-2.1
5,093,620	+				+0.7
5,093,620	+				-0.7
5,093,620	+				-2.8
5,093,628	-				+0.5
5,093,628	-				-1.8
5,093,628	-				+0.8
5,093,628	-				+0.5
5,093,628	-				-0.7
5,093,644	-				-1.7
5,093,651	+				-1.5
5,093,654	-				+0.3
5,093,660	+				-0.7
5,093,660	+				-0.2
5,093,668	-				+0.4
5,093,668	-				+0.5
5,093,668	-				+0.4
5,093,718	+		TX73_023430	0.21	+0.4
5,093,726	-		TX73_023430	0.23	-0.8
5,093,758	-		TX73_023430	0.32	+0.1
5,093,796	-		TX73_023430	0.43	+0.4
5,093,819	+		TX73_023430	0.49	+0.0
5,093,827	-		TX73_023430	0.52	+0.1
5,093,831	+		TX73_023430	0.53	+0.9
5,093,839	-		TX73_023430	0.55	+0.5
5,093,859	+		TX73_023430	0.61	-1.6
5,093,876	+		TX73_023430	0.65	-0.8
5,093,884	-		TX73_023430	0.68	-0.0
5,093,886	+		TX73_023430	0.68	+1.4
5,093,896	+		TX73_023430	0.71	-0.2
5,093,904	-		TX73_023430	0.73	+0.5
5,093,913	-		TX73_023430	0.76	-0.3
5,093,916	+		TX73_023430	0.76	-0.6
5,093,928	+		TX73_023430	0.80	-0.2
5,093,938	+		TX73_023430	0.83	+0.9
5,093,979	+				-0.7
5,093,982	-				+0.3
5,094,023	+				+1.0
5,094,030	+				+1.3
5,094,031	-				-0.6
5,094,031	-				-0.8
5,094,035	+				-0.4
5,094,038	-				-1.0
5,094,040	+				+0.3
5,094,054	-				-0.2
5,094,064	-				-0.3
5,094,098	+				-0.1
5,094,120	+		TX73_023435	0.11	-1.3
5,094,120	+		TX73_023435	0.11	-0.5
5,094,120	+		TX73_023435	0.11	+0.1
5,094,120	+		TX73_023435	0.11	+1.0
5,094,120	+		TX73_023435	0.11	-3.2
5,094,120	+		TX73_023435	0.11	-0.7
5,094,120	+		TX73_023435	0.11	-0.7
5,094,125	+		TX73_023435	0.12	-2.3
5,094,128	-		TX73_023435	0.12	-0.2
5,094,128	-		TX73_023435	0.12	+0.6
5,094,128	-		TX73_023435	0.12	-0.5
5,094,137	+		TX73_023435	0.13	-0.0
5,094,145	-		TX73_023435	0.14	-0.3
5,094,145	-		TX73_023435	0.14	+0.3
5,094,186	+		TX73_023435	0.18	-0.9
5,094,189	-		TX73_023435	0.18	+0.6
5,094,204	+		TX73_023435	0.19	+0.9
5,094,205	-		TX73_023435	0.20	-0.8
5,094,205	-		TX73_023435	0.20	-0.2
5,094,220	+		TX73_023435	0.21	-0.3
5,094,228	-		TX73_023435	0.22	+1.7
5,094,237	-		TX73_023435	0.23	-1.0
5,094,311	+		TX73_023435	0.30	+0.3
5,094,319	-		TX73_023435	0.31	-1.4
5,094,326	+		TX73_023435	0.32	+0.3
5,094,326	+		TX73_023435	0.32	+0.6
5,094,327	+		TX73_023435	0.32	-0.2
5,094,328	+		TX73_023435	0.32	-1.8
5,094,328	+		TX73_023435	0.32	-0.0
5,094,376	+		TX73_023435	0.37	+1.1
5,094,404	+		TX73_023435	0.39	-0.2
5,094,416	-		TX73_023435	0.40	-0.7
5,094,421	+		TX73_023435	0.41	+1.1
5,094,421	+		TX73_023435	0.41	+0.5
5,094,421	+		TX73_023435	0.41	-1.6
5,094,424	-		TX73_023435	0.41	-0.8
5,094,425	+		TX73_023435	0.41	+0.2
5,094,429	-		TX73_023435	0.42	-0.8
5,094,429	-		TX73_023435	0.42	-0.7
5,094,433	-		TX73_023435	0.42	+0.0
5,094,462	-		TX73_023435	0.45	-0.9
5,094,462	-		TX73_023435	0.45	+0.9
5,094,464	-		TX73_023435	0.45	+0.9
5,094,466	-		TX73_023435	0.45	-0.3
5,094,466	-		TX73_023435	0.45	+0.4
5,094,493	+		TX73_023435	0.48	-1.0
5,094,503	-		TX73_023435	0.49	-0.3
5,094,503	-		TX73_023435	0.49	+1.5
5,094,518	+		TX73_023435	0.51	+0.0
5,094,528	-		TX73_023435	0.52	-0.3
5,094,540	+		TX73_023435	0.53	+1.1
5,094,573	+		TX73_023435	0.56	-0.5
5,094,596	-		TX73_023435	0.58	-1.4
5,094,599	-		TX73_023435	0.59	-0.4
5,094,599	-		TX73_023435	0.59	-1.4
5,094,613	+		TX73_023435	0.60	-0.8
5,094,673	+		TX73_023435	0.66	-1.4
5,094,677	+		TX73_023435	0.66	-0.7
5,094,685	-		TX73_023435	0.67	-0.9
5,094,714	+		TX73_023435	0.70	-0.8
5,094,747	-		TX73_023435	0.73	-0.1
5,094,775	+		TX73_023435	0.76	-1.6
5,094,786	-		TX73_023435	0.77	-0.5
5,094,797	+		TX73_023435	0.78	-1.5
5,094,797	+		TX73_023435	0.78	+0.3
5,094,805	-		TX73_023435	0.79	-0.3
5,094,823	-		TX73_023435	0.81	+0.5
5,094,828	-		TX73_023435	0.81	+0.8
5,094,890	+		TX73_023435	0.88	-2.4
5,094,972	-				-0.4
5,094,987	-				+0.1
5,095,024	+				+0.2
5,095,108	+				+1.1
5,095,137	+				+0.2
5,095,137	+				+0.9
5,095,142	+				+0.7
5,095,150	-				-0.5
5,095,160	+				-0.5
5,095,161	-				-0.6
5,095,173	+				+0.2
5,095,181	-				-2.4
5,095,181	-				+0.1
5,095,204	+				-1.4
5,095,212	-				-0.4
5,095,212	-				-1.1
5,095,212	-				+1.2
5,095,219	+				+0.5
5,095,244	-				+0.2
5,095,244	-				+1.2
5,095,283	-				+0.6
5,095,318	-				-1.6
5,095,323	-				+0.3
5,095,366	+		TX73_023440	0.11	-2.8
5,095,374	-		TX73_023440	0.11	+0.9
5,095,378	+		TX73_023440	0.12	+0.6
5,095,406	-		TX73_023440	0.13	+0.1
5,095,442	-		TX73_023440	0.16	-0.0
5,095,446	-		TX73_023440	0.16	-1.2
5,095,515	-		TX73_023440	0.20	-0.3
5,095,515	-		TX73_023440	0.20	-1.0
5,095,515	-		TX73_023440	0.20	+0.1
5,095,522	+		TX73_023440	0.21	-0.5
5,095,522	+		TX73_023440	0.21	+0.3
5,095,523	-		TX73_023440	0.21	-0.1
5,095,759	+		TX73_023440	0.35	-0.5
5,095,801	+		TX73_023440	0.38	+1.9
5,095,803	+		TX73_023440	0.38	+1.1
5,095,872	+		TX73_023440	0.42	+0.2
5,095,885	-		TX73_023440	0.43	+0.7
5,095,885	-		TX73_023440	0.43	+0.3
5,095,918	+		TX73_023440	0.45	+0.6
5,095,918	+		TX73_023440	0.45	-0.9
5,095,926	-		TX73_023440	0.46	-0.1
5,095,931	-		TX73_023440	0.46	-0.1
5,096,001	-		TX73_023440	0.50	-1.5