Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014065

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,085,459	+				+1.4
3,085,467	-				-0.1
3,085,470	-				+0.2
3,085,526	+				+0.8
3,085,576	+				+0.8
3,085,584	-				+0.1
3,085,584	-				-0.5
3,085,585	-				-0.1
3,085,588	+				-1.5
3,085,588	+				+0.8
3,085,641	+				-0.1
3,085,658	+				-1.0
3,085,719	-		TX73_014060	0.19	+0.5
3,085,724	-		TX73_014060	0.20	-0.3
3,085,742	+		TX73_014060	0.24	-0.2
3,085,743	+		TX73_014060	0.24	-0.2
3,085,756	-		TX73_014060	0.27	-0.6
3,085,769	+		TX73_014060	0.29	+0.1
3,085,800	+		TX73_014060	0.36	+0.4
3,085,832	-		TX73_014060	0.43	+0.5
3,085,845	+		TX73_014060	0.46	-1.2
3,085,845	+		TX73_014060	0.46	+0.0
3,085,845	+		TX73_014060	0.46	-0.7
3,085,845	+		TX73_014060	0.46	+0.9
3,085,845	+		TX73_014060	0.46	+0.2
3,085,845	+		TX73_014060	0.46	+0.2
3,085,845	+		TX73_014060	0.46	-0.1
3,085,845	+		TX73_014060	0.46	-0.6
3,085,853	-		TX73_014060	0.48	+1.7
3,085,853	-		TX73_014060	0.48	+0.1
3,085,853	-		TX73_014060	0.48	-0.1
3,085,906	-		TX73_014060	0.59	-1.4
3,085,908	+		TX73_014060	0.59	-1.9
3,085,913	+		TX73_014060	0.60	-0.4
3,085,934	-		TX73_014060	0.65	-1.8
3,085,942	+		TX73_014060	0.67	+0.7
3,085,952	+		TX73_014060	0.69	+0.8
3,085,956	+		TX73_014060	0.70	-0.6
3,085,962	-		TX73_014060	0.71	+0.5
3,085,964	-		TX73_014060	0.71	+0.0
3,086,019	-		TX73_014060	0.83	+2.0
3,086,022	-		TX73_014060	0.84	+0.9
3,086,024	+		TX73_014060	0.84	+1.3
3,086,034	+		TX73_014060	0.86	-2.5
3,086,061	-				-0.5
3,086,071	-				+0.4
3,086,071	-				+1.2
3,086,117	+				+0.4
3,086,121	+				+0.3
3,086,133	-				+0.1
3,086,158	+				-0.5
3,086,172	+				+1.0
3,086,180	-				-1.8
3,086,190	-				-1.5
3,086,216	-				-1.1
3,086,280	+				+0.2
3,086,310	+				-0.2
3,086,352	-		TX73_014065	0.11	-0.7
3,086,371	+		TX73_014065	0.13	+0.1
3,086,422	+		TX73_014065	0.16	+1.1
3,086,424	-		TX73_014065	0.16	-2.1
3,086,425	-		TX73_014065	0.16	+0.3
3,086,433	-		TX73_014065	0.17	-1.0
3,086,435	-		TX73_014065	0.17	-1.2
3,086,458	-		TX73_014065	0.18	-0.6
3,086,464	+		TX73_014065	0.19	+0.5
3,086,468	-		TX73_014065	0.19	+0.6
3,086,548	-		TX73_014065	0.24	+1.0
3,086,557	-		TX73_014065	0.24	+0.6
3,086,559	+		TX73_014065	0.25	-1.0
3,086,561	-		TX73_014065	0.25	+0.2
3,086,578	+		TX73_014065	0.26	-1.5
3,086,585	+		TX73_014065	0.26	-2.9
3,086,606	-		TX73_014065	0.28	-0.2
3,086,609	+		TX73_014065	0.28	-0.3
3,086,624	-		TX73_014065	0.29	+0.0
3,086,645	+		TX73_014065	0.30	+0.5
3,086,653	-		TX73_014065	0.31	-0.2
3,086,670	-		TX73_014065	0.32	+0.0
3,086,680	+		TX73_014065	0.32	+0.8
3,086,680	+		TX73_014065	0.32	-0.1
3,086,688	-		TX73_014065	0.33	-0.3
3,086,688	-		TX73_014065	0.33	-1.1
3,086,689	-		TX73_014065	0.33	-0.1
3,086,689	-		TX73_014065	0.33	+0.7
3,086,706	+		TX73_014065	0.34	+0.4
3,086,707	+		TX73_014065	0.34	+0.2
3,086,707	+		TX73_014065	0.34	-0.4
3,086,707	+		TX73_014065	0.34	+0.7
3,086,715	-		TX73_014065	0.35	-1.5
3,086,715	-		TX73_014065	0.35	+0.7
3,086,740	+		TX73_014065	0.36	-0.3
3,086,748	-		TX73_014065	0.37	+0.5
3,086,748	-		TX73_014065	0.37	+0.9
3,086,753	-		TX73_014065	0.37	-0.2
3,086,768	+		TX73_014065	0.38	-0.4
3,086,773	+		TX73_014065	0.38	+0.6
3,086,804	-		TX73_014065	0.40	+0.4
3,086,870	-		TX73_014065	0.44	+1.0
3,086,876	+		TX73_014065	0.45	-1.2
3,086,876	+		TX73_014065	0.45	+0.3
3,086,876	+		TX73_014065	0.45	+1.0
3,086,883	+		TX73_014065	0.45	+0.3
3,086,884	-		TX73_014065	0.45	-1.4
3,086,884	-		TX73_014065	0.45	-0.8
3,086,884	-		TX73_014065	0.45	+0.4
3,086,884	-		TX73_014065	0.45	-0.0
3,086,891	+		TX73_014065	0.46	-0.5
3,086,891	+		TX73_014065	0.46	+0.1
3,086,916	-		TX73_014065	0.47	-0.3
3,086,921	+		TX73_014065	0.48	-0.2
3,086,929	-		TX73_014065	0.48	+0.1
3,086,948	-		TX73_014065	0.49	+0.3
3,086,956	+		TX73_014065	0.50	-1.1
3,086,956	+		TX73_014065	0.50	+0.3
3,086,958	+		TX73_014065	0.50	+0.5
3,086,959	-		TX73_014065	0.50	-1.0
3,086,968	+		TX73_014065	0.51	+0.3
3,086,968	+		TX73_014065	0.51	+0.7
3,086,976	-		TX73_014065	0.51	+0.2
3,086,983	+		TX73_014065	0.52	-0.3
3,086,983	+		TX73_014065	0.52	+0.9
3,086,983	+		TX73_014065	0.52	+0.5
3,086,983	+		TX73_014065	0.52	+0.3
3,086,989	-		TX73_014065	0.52	+1.4
3,087,020	+		TX73_014065	0.54	+1.1
3,087,033	-		TX73_014065	0.55	+0.3
3,087,033	-		TX73_014065	0.55	+0.5
3,087,073	-		TX73_014065	0.57	+0.3
3,087,097	+		TX73_014065	0.59	-0.1
3,087,097	+		TX73_014065	0.59	+0.9
3,087,097	+		TX73_014065	0.59	-1.1
3,087,105	-		TX73_014065	0.59	+0.3
3,087,139	+		TX73_014065	0.62	+0.3
3,087,139	-		TX73_014065	0.62	+0.8
3,087,147	-		TX73_014065	0.62	+1.0
3,087,147	-		TX73_014065	0.62	+2.3
3,087,147	-		TX73_014065	0.62	+0.5
3,087,147	-		TX73_014065	0.62	+1.2
3,087,154	-		TX73_014065	0.63	+0.1
3,087,182	-		TX73_014065	0.64	+0.8
3,087,210	+		TX73_014065	0.66	+0.4
3,087,210	+		TX73_014065	0.66	+0.2
3,087,218	-		TX73_014065	0.67	-0.7
3,087,218	-		TX73_014065	0.67	+1.8
3,087,218	-		TX73_014065	0.67	+0.0
3,087,225	+		TX73_014065	0.67	+0.1
3,087,226	-		TX73_014065	0.67	+0.7
3,087,233	-		TX73_014065	0.68	+1.0
3,087,246	+		TX73_014065	0.68	+0.4
3,087,260	+		TX73_014065	0.69	+0.5
3,087,260	+		TX73_014065	0.69	-1.0
3,087,260	+		TX73_014065	0.69	+0.2
3,087,260	+		TX73_014065	0.69	-0.5
3,087,268	-		TX73_014065	0.70	-0.3
3,087,286	+		TX73_014065	0.71	+0.6
3,087,294	-		TX73_014065	0.72	-1.1
3,087,300	+		TX73_014065	0.72	-1.3
3,087,300	+		TX73_014065	0.72	+0.1
3,087,310	+		TX73_014065	0.73	-1.1
3,087,321	+		TX73_014065	0.73	-1.0
3,087,354	-		TX73_014065	0.75	+1.2
3,087,388	+		TX73_014065	0.78	-0.1
3,087,395	+		TX73_014065	0.78	-0.7
3,087,399	-		TX73_014065	0.78	-0.6
3,087,431	+		TX73_014065	0.80	+0.6
3,087,434	+		TX73_014065	0.80	-0.2
3,087,439	-		TX73_014065	0.81	-2.7
3,087,462	-		TX73_014065	0.82	+0.4
3,087,486	-		TX73_014065	0.84	+0.5
3,087,497	+		TX73_014065	0.84	-0.9
3,087,500	-		TX73_014065	0.85	+0.3
3,087,502	+		TX73_014065	0.85	-2.1
3,087,513	-		TX73_014065	0.86	-0.1
3,087,542	+		TX73_014065	0.87	-0.7
3,087,574	-		TX73_014065	0.89	-0.1
3,087,579	+		TX73_014065	0.90	-1.7
3,087,579	-		TX73_014065	0.90	+0.7
3,087,587	+				+0.3
3,087,589	-				-0.8
3,087,597	-				+0.5
3,087,677	-				-0.1
3,087,681	-				+0.2
3,087,681	-				-1.2
3,087,691	+				+0.4
3,087,706	+				+1.1
3,087,724	-				+0.2
3,087,742	-				-0.7
3,087,772	+				+0.1
3,087,772	+				+0.2
3,087,772	+				-0.3
3,087,777	+				-0.3
3,087,780	-				+0.3
3,087,780	-				+0.5
3,087,782	+				+1.7
3,087,782	+				+0.2
3,087,789	+				+0.5
3,087,790	-				+0.4
3,087,792	+				-0.2
3,087,809	-				-0.1
3,087,817	-				-0.3
3,087,817	-				-1.2
3,087,885	+				-0.4
3,087,893	-				+0.8
3,087,941	+				+0.9
3,088,604	+				+0.7
3,088,604	+				+0.2
3,088,604	+				+0.9
3,088,604	+				+0.6
3,088,604	+				-0.6
3,088,612	-				-0.6
3,088,678	-				-0.6
3,088,683	-				-0.1
3,088,691	+				-0.3
3,088,693	+				+0.2
3,088,693	+				+0.2
3,088,693	+				-0.5
3,088,701	-				+1.1
3,088,701	-				-0.2
3,088,701	-				-1.9
3,088,718	+				-0.0
3,088,718	+				+0.9
3,088,720	+				-1.3
3,088,720	+				+1.7
3,088,720	+				-0.0
3,088,720	+				-0.2
3,088,720	+				-0.1
3,088,726	-				-0.8
3,088,728	-				+0.0
3,088,728	-				-0.2