Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004755

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
1,023,464	-				+0.7
1,023,500	+		TX73_004750	0.10	-0.3
1,023,540	+		TX73_004750	0.14	+0.1
1,023,577	+		TX73_004750	0.18	+0.6
1,023,595	-		TX73_004750	0.19	-0.9
1,023,625	+		TX73_004750	0.22	-0.7
1,023,625	+		TX73_004750	0.22	-1.5
1,023,628	-		TX73_004750	0.23	-1.3
1,023,629	-		TX73_004750	0.23	-0.0
1,023,630	+		TX73_004750	0.23	-0.6
1,023,633	-		TX73_004750	0.23	+0.2
1,023,633	-		TX73_004750	0.23	+0.5
1,023,638	-		TX73_004750	0.24	+0.5
1,023,638	-		TX73_004750	0.24	-0.7
1,023,638	-		TX73_004750	0.24	+1.8
1,023,638	-		TX73_004750	0.24	+0.1
1,023,643	-		TX73_004750	0.24	-0.7
1,023,643	-		TX73_004750	0.24	-0.4
1,023,659	-		TX73_004750	0.26	+0.6
1,023,667	+		TX73_004750	0.27	+0.3
1,023,671	-		TX73_004750	0.27	+1.3
1,023,675	-		TX73_004750	0.27	-1.7
1,023,692	-		TX73_004750	0.29	+0.4
1,023,697	-		TX73_004750	0.29	-2.2
1,023,717	+		TX73_004750	0.31	+0.7
1,023,735	-		TX73_004750	0.33	-1.1
1,023,740	-		TX73_004750	0.34	+0.7
1,023,745	+		TX73_004750	0.34	-0.8
1,023,753	-		TX73_004750	0.35	+0.0
1,023,760	-		TX73_004750	0.36	+1.1
1,023,847	-		TX73_004750	0.44	-0.2
1,023,850	+		TX73_004750	0.44	+0.3
1,023,855	-		TX73_004750	0.45	-0.6
1,023,858	+		TX73_004750	0.45	+0.8
1,023,886	+		TX73_004750	0.48	-0.9
1,023,908	-		TX73_004750	0.50	-1.6
1,023,928	+		TX73_004750	0.52	+0.1
1,023,992	+		TX73_004750	0.58	-1.0
1,023,999	+		TX73_004750	0.59	-0.3
1,023,999	+		TX73_004750	0.59	+0.9
1,024,000	-		TX73_004750	0.59	+0.2
1,024,005	+		TX73_004750	0.59	+0.8
1,024,005	-		TX73_004750	0.59	-1.7
1,024,007	-		TX73_004750	0.60	+1.4
1,024,009	+		TX73_004750	0.60	-0.1
1,024,013	-		TX73_004750	0.60	+0.5
1,024,013	-		TX73_004750	0.60	+0.6
1,024,017	-		TX73_004750	0.61	-1.8
1,024,046	-		TX73_004750	0.63	+0.4
1,024,050	+		TX73_004750	0.64	-0.9
1,024,055	+		TX73_004750	0.64	-0.0
1,024,058	-		TX73_004750	0.65	+0.8
1,024,104	-		TX73_004750	0.69	+0.6
1,024,116	+		TX73_004750	0.70	-0.5
1,024,116	+		TX73_004750	0.70	+0.7
1,024,116	+		TX73_004750	0.70	-1.3
1,024,116	+		TX73_004750	0.70	-0.7
1,024,122	+		TX73_004750	0.71	+0.5
1,024,124	-		TX73_004750	0.71	-0.3
1,024,124	-		TX73_004750	0.71	+0.2
1,024,124	-		TX73_004750	0.71	-1.8
1,024,124	-		TX73_004750	0.71	+0.8
1,024,124	-		TX73_004750	0.71	-0.6
1,024,124	-		TX73_004750	0.71	-1.0
1,024,125	-		TX73_004750	0.71	-0.2
1,024,150	+		TX73_004750	0.74	+0.8
1,024,161	-		TX73_004750	0.75	+0.3
1,024,176	-		TX73_004750	0.76	-2.5
1,024,180	+		TX73_004750	0.77	-1.0
1,024,186	+		TX73_004750	0.77	-0.2
1,024,186	-		TX73_004750	0.77	-0.8
1,024,218	+		TX73_004750	0.80	-0.4
1,024,221	+		TX73_004750	0.81	+0.7
1,024,221	+		TX73_004750	0.81	-0.9
1,024,221	+		TX73_004750	0.81	-0.2
1,024,222	+		TX73_004750	0.81	-1.1
1,024,229	-		TX73_004750	0.81	+1.5
1,024,229	-		TX73_004750	0.81	-1.3
1,024,265	+		TX73_004750	0.85	-0.2
1,024,267	-		TX73_004750	0.85	+0.5
1,024,268	-		TX73_004750	0.85	-0.3
1,024,268	-		TX73_004750	0.85	-0.7
1,024,268	-		TX73_004750	0.85	-0.4
1,024,273	+		TX73_004750	0.86	+0.3
1,024,291	+		TX73_004750	0.87	-0.0
1,024,291	+		TX73_004750	0.87	+0.8
1,024,303	-		TX73_004750	0.88	+1.0
1,024,311	-		TX73_004750	0.89	-0.2
1,024,344	+				-0.3
1,024,416	+				+1.3
1,024,428	+				-2.5
1,024,436	-				-0.7
1,024,465	-				+0.8
1,024,469	+				-0.7
1,024,474	+				-0.8
1,024,505	+				+0.7
1,024,505	+				+0.3
1,024,513	-				-0.9
1,024,513	-				+0.4
1,024,539	+		TX73_004755	0.12	-1.2
1,024,544	-		TX73_004755	0.12	-0.6
1,024,546	+		TX73_004755	0.12	-0.7
1,024,552	+		TX73_004755	0.13	-1.0
1,024,572	-		TX73_004755	0.15	+0.0
1,024,574	+		TX73_004755	0.15	-0.1
1,024,593	+		TX73_004755	0.17	-0.8
1,024,634	-		TX73_004755	0.21	+0.0
1,024,637	+		TX73_004755	0.21	+0.5
1,024,660	+		TX73_004755	0.24	-1.0
1,024,660	+		TX73_004755	0.24	+0.9
1,024,660	-		TX73_004755	0.24	+0.0
1,024,668	-		TX73_004755	0.24	-1.0
1,024,698	-		TX73_004755	0.27	-0.2
1,024,700	-		TX73_004755	0.27	-1.1
1,024,716	+		TX73_004755	0.29	-2.2
1,024,736	-		TX73_004755	0.31	-0.0
1,024,739	+		TX73_004755	0.31	+0.7
1,024,739	+		TX73_004755	0.31	+0.1
1,024,739	+		TX73_004755	0.31	+0.5
1,024,739	+		TX73_004755	0.31	+0.3
1,024,747	-		TX73_004755	0.32	+0.4
1,024,747	-		TX73_004755	0.32	-0.7
1,024,747	-		TX73_004755	0.32	-0.5
1,024,747	-		TX73_004755	0.32	+0.5
1,024,747	-		TX73_004755	0.32	-0.6
1,024,750	+		TX73_004755	0.32	+0.5
1,024,805	+		TX73_004755	0.38	+0.1
1,024,841	+		TX73_004755	0.41	-0.2
1,024,861	+		TX73_004755	0.43	+0.6
1,024,863	-		TX73_004755	0.43	-1.5
1,024,873	-		TX73_004755	0.44	+1.2
1,024,873	-		TX73_004755	0.44	+0.3
1,024,876	+		TX73_004755	0.45	+0.1
1,024,943	+		TX73_004755	0.51	+0.1
1,024,953	+		TX73_004755	0.52	-0.5
1,024,956	-		TX73_004755	0.53	+0.3
1,024,961	-		TX73_004755	0.53	+0.5
1,024,964	+		TX73_004755	0.53	+0.2
1,024,964	+		TX73_004755	0.53	-0.6
1,024,972	-		TX73_004755	0.54	+0.0
1,024,972	-		TX73_004755	0.54	+1.1
1,024,974	+		TX73_004755	0.54	+2.3
1,024,982	-		TX73_004755	0.55	+0.0
1,024,982	-		TX73_004755	0.55	+0.9
1,024,997	+		TX73_004755	0.57	+0.4
1,025,024	+		TX73_004755	0.59	-1.2
1,025,110	-		TX73_004755	0.68	+0.4
1,025,159	-		TX73_004755	0.72	+1.0
1,025,235	-		TX73_004755	0.80	+1.1
1,025,245	+		TX73_004755	0.81	+0.8
1,025,245	+		TX73_004755	0.81	-0.5
1,025,245	+		TX73_004755	0.81	-1.7
1,025,245	+		TX73_004755	0.81	-0.9
1,025,253	-		TX73_004755	0.82	-0.1
1,025,255	+		TX73_004755	0.82	+0.8
1,025,255	+		TX73_004755	0.82	-1.9
1,025,255	+		TX73_004755	0.82	+0.5
1,025,260	+		TX73_004755	0.82	-0.7
1,025,263	-		TX73_004755	0.83	-0.6
1,025,268	-		TX73_004755	0.83	+0.2
1,025,268	-		TX73_004755	0.83	+1.1
1,025,269	+		TX73_004755	0.83	+1.2
1,025,305	-		TX73_004755	0.87	+0.6
1,025,316	+		TX73_004755	0.88	-0.7
1,025,321	+		TX73_004755	0.88	-0.5
1,025,321	+		TX73_004755	0.88	-1.7
1,025,329	-		TX73_004755	0.89	-1.1
1,025,348	-				+0.6
1,025,410	+				+0.9
1,025,427	+				+0.0
1,025,435	+				-0.1
1,025,435	-				+0.2
1,025,440	+				+0.3
1,025,448	-				+1.4
1,025,450	+				+0.4
1,025,450	+				+0.7
1,025,497	-				+0.1
1,025,499	+				-0.3
1,025,499	-				+0.4
1,025,507	-				+0.2
1,025,508	+				+0.2
1,025,571	+				+0.7
1,025,571	+				-1.0
1,025,571	+				-0.1
1,025,579	-				-0.1
1,025,618	+				-0.3
1,025,628	+				-1.3
1,025,628	+				+1.3
1,025,636	-				+0.6
1,025,636	-				-0.1
1,025,636	-				-0.2
1,025,641	-				-0.2
1,025,663	+				+1.1
1,025,687	+				-0.0
1,025,687	+				+1.3
1,025,695	-				+0.8
1,025,724	-		TX73_004760	0.12	+0.8
1,025,726	+		TX73_004760	0.13	-3.1
1,025,734	-		TX73_004760	0.14	-0.1
1,025,734	-		TX73_004760	0.14	-0.6
1,025,736	+		TX73_004760	0.14	-0.9
1,025,767	-		TX73_004760	0.18	+0.6
1,025,769	+		TX73_004760	0.18	+1.0
1,025,772	-		TX73_004760	0.18	+0.1
1,025,826	-		TX73_004760	0.25	+0.7
1,025,893	-		TX73_004760	0.33	-0.7
1,025,898	-		TX73_004760	0.33	-0.3
1,025,922	+		TX73_004760	0.36	-0.6
1,025,922	-		TX73_004760	0.36	+0.1
1,025,927	+		TX73_004760	0.37	+0.5
1,025,935	-		TX73_004760	0.38	+0.2
1,025,935	-		TX73_004760	0.38	+0.2
1,025,943	-		TX73_004760	0.39	-1.1
1,025,975	+		TX73_004760	0.43	+0.0
1,025,975	+		TX73_004760	0.43	+0.9
1,025,999	-		TX73_004760	0.46	-0.5
1,025,999	-		TX73_004760	0.46	+1.0
1,026,109	-		TX73_004760	0.59	-1.4
1,026,113	+		TX73_004760	0.60	-0.5
1,026,113	+		TX73_004760	0.60	-2.9
1,026,113	+		TX73_004760	0.60	-1.6
1,026,121	-		TX73_004760	0.60	-0.6
1,026,121	-		TX73_004760	0.60	-0.2
1,026,154	-		TX73_004760	0.64	-1.0
1,026,260	+		TX73_004760	0.77	+0.8
1,026,260	+		TX73_004760	0.77	+0.2
1,026,260	+		TX73_004760	0.77	-1.2
1,026,266	+		TX73_004760	0.78	-2.6
1,026,275	-		TX73_004760	0.79	-0.6
1,026,348	-		TX73_004760	0.88	-0.2
1,026,392	+				+1.5
1,026,392	+				-0.8
1,026,400	-				+2.4