Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002110

Experiment: PM with succinate aerobic in dark

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_002105 and TX73_002110 are separated by 3 nucleotidesTX73_002110 and TX73_002115 are separated by 4 nucleotides TX73_002105: TX73_002105 - TAXI family TRAP transporter solute-binding subunit, at 444,468 to 445,856 _002105 TX73_002110: TX73_002110 - PepSY domain-containing protein, at 445,860 to 447,305 _002110 TX73_002115: TX73_002115 - TonB-dependent receptor, at 447,310 to 449,586 _002115 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.863 kb on - strand, within TX73_002105at 444.869 kb on - strand, within TX73_002105at 444.937 kb on - strand, within TX73_002105at 444.951 kb on + strand, within TX73_002105at 444.969 kb on - strand, within TX73_002105at 444.974 kb on + strand, within TX73_002105at 445.006 kb on + strand, within TX73_002105at 445.043 kb on - strand, within TX73_002105at 445.090 kb on - strand, within TX73_002105at 445.129 kb on - strand, within TX73_002105at 445.153 kb on - strand, within TX73_002105at 445.193 kb on + strand, within TX73_002105at 445.203 kb on + strand, within TX73_002105at 445.208 kb on - strand, within TX73_002105at 445.280 kb on + strand, within TX73_002105at 445.290 kb on - strand, within TX73_002105at 445.305 kb on + strand, within TX73_002105at 445.320 kb on - strand, within TX73_002105at 445.422 kb on + strand, within TX73_002105at 445.496 kb on + strand, within TX73_002105at 445.534 kb on - strand, within TX73_002105at 445.562 kb on + strand, within TX73_002105at 445.585 kb on + strand, within TX73_002105at 445.585 kb on + strand, within TX73_002105at 445.587 kb on + strand, within TX73_002105at 445.616 kb on + strand, within TX73_002105at 445.616 kb on + strand, within TX73_002105at 445.624 kb on - strand, within TX73_002105at 445.642 kb on + strand, within TX73_002105at 445.657 kb on + strand, within TX73_002105at 445.683 kb on + strand, within TX73_002105at 445.691 kb on + strand, within TX73_002105at 445.745 kb on + strandat 445.834 kb on + strandat 445.834 kb on + strandat 445.834 kb on + strandat 445.847 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.853 kb on + strandat 445.856 kb on + strandat 445.859 kb on - strandat 445.859 kb on - strandat 445.859 kb on - strandat 445.884 kb on + strandat 445.962 kb on - strandat 445.978 kb on - strandat 446.048 kb on + strand, within TX73_002110at 446.063 kb on - strand, within TX73_002110at 446.098 kb on + strand, within TX73_002110at 446.101 kb on - strand, within TX73_002110at 446.119 kb on - strand, within TX73_002110at 446.129 kb on + strand, within TX73_002110at 446.160 kb on - strand, within TX73_002110at 446.160 kb on - strand, within TX73_002110at 446.170 kb on - strand, within TX73_002110at 446.201 kb on - strand, within TX73_002110at 446.302 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.358 kb on - strand, within TX73_002110at 446.372 kb on - strand, within TX73_002110at 446.404 kb on + strand, within TX73_002110at 446.404 kb on + strand, within TX73_002110at 446.409 kb on + strand, within TX73_002110at 446.412 kb on - strand, within TX73_002110at 446.412 kb on - strand, within TX73_002110at 446.417 kb on - strand, within TX73_002110at 446.417 kb on - strand, within TX73_002110at 446.425 kb on - strand, within TX73_002110at 446.432 kb on + strand, within TX73_002110at 446.442 kb on + strand, within TX73_002110at 446.514 kb on - strand, within TX73_002110at 446.567 kb on - strand, within TX73_002110at 446.598 kb on + strand, within TX73_002110at 446.606 kb on - strand, within TX73_002110at 446.631 kb on + strand, within TX73_002110at 446.643 kb on + strand, within TX73_002110at 446.655 kb on + strand, within TX73_002110at 446.696 kb on - strand, within TX73_002110at 446.753 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.861 kb on + strand, within TX73_002110at 446.889 kb on - strand, within TX73_002110at 446.953 kb on + strand, within TX73_002110at 446.961 kb on - strand, within TX73_002110at 446.963 kb on + strand, within TX73_002110at 446.995 kb on + strand, within TX73_002110at 447.000 kb on + strand, within TX73_002110at 447.003 kb on - strand, within TX73_002110at 447.035 kb on + strand, within TX73_002110at 447.048 kb on - strand, within TX73_002110at 447.141 kb on + strand, within TX73_002110at 447.236 kb on - strandat 447.303 kb on - strandat 447.306 kb on - strandat 447.331 kb on - strandat 447.336 kb on - strandat 447.517 kb on - strandat 447.517 kb on - strandat 447.565 kb on + strand, within TX73_002115at 447.628 kb on + strand, within TX73_002115at 447.687 kb on - strand, within TX73_002115at 447.718 kb on - strand, within TX73_002115at 447.720 kb on + strand, within TX73_002115at 447.720 kb on + strand, within TX73_002115at 447.728 kb on - strand, within TX73_002115at 447.776 kb on + strand, within TX73_002115at 447.776 kb on + strand, within TX73_002115at 447.793 kb on + strand, within TX73_002115at 447.801 kb on - strand, within TX73_002115at 447.803 kb on - strand, within TX73_002115at 447.821 kb on + strand, within TX73_002115at 447.982 kb on - strand, within TX73_002115at 447.982 kb on - strand, within TX73_002115at 448.030 kb on - strand, within TX73_002115at 448.041 kb on + strand, within TX73_002115at 448.041 kb on + strand, within TX73_002115at 448.056 kb on + strand, within TX73_002115at 448.064 kb on - strand, within TX73_002115at 448.064 kb on - strand, within TX73_002115at 448.116 kb on - strand, within TX73_002115at 448.199 kb on - strand, within TX73_002115at 448.266 kb on - strand, within TX73_002115at 448.277 kb on - strand, within TX73_002115at 448.305 kb on - strand, within TX73_002115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark
remove
444,863 - TX73_002105 0.28 +0.0
444,869 - TX73_002105 0.29 -1.1
444,937 - TX73_002105 0.34 -0.1
444,951 + TX73_002105 0.35 +0.5
444,969 - TX73_002105 0.36 +0.8
444,974 + TX73_002105 0.36 -0.7
445,006 + TX73_002105 0.39 -0.0
445,043 - TX73_002105 0.41 +0.6
445,090 - TX73_002105 0.45 -1.9
445,129 - TX73_002105 0.48 +0.7
445,153 - TX73_002105 0.49 +0.7
445,193 + TX73_002105 0.52 +0.5
445,203 + TX73_002105 0.53 -1.2
445,208 - TX73_002105 0.53 +0.0
445,280 + TX73_002105 0.58 +0.7
445,290 - TX73_002105 0.59 -0.1
445,305 + TX73_002105 0.60 -1.2
445,320 - TX73_002105 0.61 -1.4
445,422 + TX73_002105 0.69 -1.0
445,496 + TX73_002105 0.74 +0.1
445,534 - TX73_002105 0.77 -0.8
445,562 + TX73_002105 0.79 +0.4
445,585 + TX73_002105 0.80 -0.5
445,585 + TX73_002105 0.80 +0.4
445,587 + TX73_002105 0.81 -0.4
445,616 + TX73_002105 0.83 -1.6
445,616 + TX73_002105 0.83 -0.2
445,624 - TX73_002105 0.83 -0.4
445,642 + TX73_002105 0.85 +0.2
445,657 + TX73_002105 0.86 -0.8
445,683 + TX73_002105 0.87 -0.4
445,691 + TX73_002105 0.88 -0.5
445,745 + -0.6
445,834 + -0.4
445,834 + -0.7
445,834 + +0.5
445,847 + +0.1
445,851 + -0.2
445,851 + -0.2
445,851 + +0.0
445,851 + -0.8
445,851 + -1.0
445,853 + -0.2
445,856 + +0.6
445,859 - +0.7
445,859 - +0.1
445,859 - -1.1
445,884 + -2.6
445,962 - +0.2
445,978 - -0.6
446,048 + TX73_002110 0.13 +0.6
446,063 - TX73_002110 0.14 +1.3
446,098 + TX73_002110 0.16 -1.5
446,101 - TX73_002110 0.17 +1.2
446,119 - TX73_002110 0.18 +0.4
446,129 + TX73_002110 0.19 +0.6
446,160 - TX73_002110 0.21 +0.5
446,160 - TX73_002110 0.21 -0.3
446,170 - TX73_002110 0.21 -0.2
446,201 - TX73_002110 0.24 +0.6
446,302 - TX73_002110 0.31 -0.8
446,312 - TX73_002110 0.31 +1.1
446,312 - TX73_002110 0.31 +0.6
446,312 - TX73_002110 0.31 -0.5
446,358 - TX73_002110 0.34 +0.2
446,372 - TX73_002110 0.35 +0.2
446,404 + TX73_002110 0.38 +0.6
446,404 + TX73_002110 0.38 -1.6
446,409 + TX73_002110 0.38 +0.9
446,412 - TX73_002110 0.38 -1.0
446,412 - TX73_002110 0.38 -1.0
446,417 - TX73_002110 0.39 -1.2
446,417 - TX73_002110 0.39 -1.8
446,425 - TX73_002110 0.39 -2.1
446,432 + TX73_002110 0.40 -3.1
446,442 + TX73_002110 0.40 +0.2
446,514 - TX73_002110 0.45 -0.7
446,567 - TX73_002110 0.49 -0.2
446,598 + TX73_002110 0.51 +1.0
446,606 - TX73_002110 0.52 +0.9
446,631 + TX73_002110 0.53 +1.3
446,643 + TX73_002110 0.54 +0.7
446,655 + TX73_002110 0.55 +1.0
446,696 - TX73_002110 0.58 +0.3
446,753 + TX73_002110 0.62 +0.3
446,791 + TX73_002110 0.64 -0.2
446,791 + TX73_002110 0.64 +1.1
446,791 + TX73_002110 0.64 +0.0
446,799 - TX73_002110 0.65 +1.0
446,799 - TX73_002110 0.65 +0.7
446,799 - TX73_002110 0.65 +1.1
446,799 - TX73_002110 0.65 -0.1
446,799 - TX73_002110 0.65 +0.3
446,861 + TX73_002110 0.69 +0.6
446,889 - TX73_002110 0.71 +1.3
446,953 + TX73_002110 0.76 -1.2
446,961 - TX73_002110 0.76 -1.1
446,963 + TX73_002110 0.76 +0.4
446,995 + TX73_002110 0.78 -0.2
447,000 + TX73_002110 0.79 -1.0
447,003 - TX73_002110 0.79 +0.1
447,035 + TX73_002110 0.81 -1.1
447,048 - TX73_002110 0.82 +1.0
447,141 + TX73_002110 0.89 +0.5
447,236 - +0.0
447,303 - +1.4
447,306 - +0.7
447,331 - +0.1
447,336 - -1.4
447,517 - +0.8
447,517 - +0.3
447,565 + TX73_002115 0.11 +0.1
447,628 + TX73_002115 0.14 +0.1
447,687 - TX73_002115 0.17 +1.2
447,718 - TX73_002115 0.18 -0.9
447,720 + TX73_002115 0.18 -0.2
447,720 + TX73_002115 0.18 -1.3
447,728 - TX73_002115 0.18 +0.2
447,776 + TX73_002115 0.20 -0.0
447,776 + TX73_002115 0.20 +1.8
447,793 + TX73_002115 0.21 -1.3
447,801 - TX73_002115 0.22 -0.6
447,803 - TX73_002115 0.22 +0.8
447,821 + TX73_002115 0.22 -0.2
447,982 - TX73_002115 0.30 -0.2
447,982 - TX73_002115 0.30 -0.8
448,030 - TX73_002115 0.32 -0.5
448,041 + TX73_002115 0.32 -1.0
448,041 + TX73_002115 0.32 -0.9
448,056 + TX73_002115 0.33 -0.1
448,064 - TX73_002115 0.33 -1.7
448,064 - TX73_002115 0.33 +0.3
448,116 - TX73_002115 0.35 -0.3
448,199 - TX73_002115 0.39 -1.6
448,266 - TX73_002115 0.42 -0.9
448,277 - TX73_002115 0.42 +2.0
448,305 - TX73_002115 0.44 -3.2

Or see this region's nucleotide sequence