Experiment: PM with succinate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000855 and TX73_000860 are separated by 24 nucleotides TX73_000860 and TX73_000865 are separated by 289 nucleotides TX73_000865 and TX73_000870 are separated by 89 nucleotides
TX73_000855: TX73_000855 - glutamate-5-semialdehyde dehydrogenase, at 183,222 to 184,514
_000855
TX73_000860: TX73_000860 - nicotinate-nucleotide adenylyltransferase, at 184,539 to 185,168
_000860
TX73_000865: TX73_000865 - ribosome silencing factor, at 185,458 to 185,835
_000865
TX73_000870: TX73_000870 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 185,925 to 186,407
_000870
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.534 kb on - strand at 184.546 kb on - strand at 184.562 kb on + strand at 185.178 kb on + strand at 185.178 kb on + strand at 185.207 kb on + strand at 185.215 kb on - strand at 185.215 kb on - strand at 185.252 kb on - strand at 185.254 kb on + strand at 185.263 kb on - strand at 185.277 kb on - strand at 185.291 kb on + strand at 185.341 kb on + strand at 185.355 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.362 kb on + strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.399 kb on + strand at 185.415 kb on + strand at 185.429 kb on + strand at 185.429 kb on + strand at 185.429 kb on + strand at 185.432 kb on - strand at 185.432 kb on - strand at 185.437 kb on - strand at 185.437 kb on - strand at 185.438 kb on - strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.448 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.486 kb on - strand at 185.486 kb on - strand at 185.486 kb on - strand at 185.486 kb on - strand at 185.521 kb on - strand, within TX73_000865 at 185.536 kb on - strand, within TX73_000865 at 185.561 kb on + strand, within TX73_000865 at 185.569 kb on - strand, within TX73_000865 at 185.595 kb on - strand, within TX73_000865 at 185.599 kb on + strand, within TX73_000865 at 185.609 kb on + strand, within TX73_000865 at 185.617 kb on - strand, within TX73_000865 at 185.617 kb on - strand, within TX73_000865 at 185.619 kb on + strand, within TX73_000865 at 185.644 kb on + strand, within TX73_000865 at 185.653 kb on + strand, within TX73_000865 at 185.653 kb on + strand, within TX73_000865 at 185.662 kb on + strand, within TX73_000865 at 185.667 kb on + strand, within TX73_000865 at 185.670 kb on - strand, within TX73_000865 at 185.671 kb on - strand, within TX73_000865 at 185.701 kb on + strand, within TX73_000865 at 185.722 kb on + strand, within TX73_000865 at 185.722 kb on - strand, within TX73_000865 at 185.741 kb on + strand, within TX73_000865 at 185.746 kb on + strand, within TX73_000865 at 185.762 kb on + strand, within TX73_000865 at 185.770 kb on - strand, within TX73_000865 at 185.786 kb on + strand, within TX73_000865 at 185.787 kb on + strand, within TX73_000865 at 185.788 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.796 kb on + strand, within TX73_000865 at 185.804 kb on + strand at 185.804 kb on + strand at 185.804 kb on - strand at 185.804 kb on - strand at 185.804 kb on - strand at 185.804 kb on - strand at 185.806 kb on + strand at 185.829 kb on + strand at 185.844 kb on - strand at 185.854 kb on - strand at 185.876 kb on + strand at 185.915 kb on + strand at 185.954 kb on + strand at 185.954 kb on + strand at 185.963 kb on - strand at 185.987 kb on + strand, within TX73_000870 at 185.987 kb on + strand, within TX73_000870 at 185.989 kb on - strand, within TX73_000870 at 185.995 kb on - strand, within TX73_000870 at 186.000 kb on + strand, within TX73_000870 at 186.002 kb on + strand, within TX73_000870 at 186.045 kb on - strand, within TX73_000870 at 186.045 kb on - strand, within TX73_000870 at 186.057 kb on + strand, within TX73_000870 at 186.122 kb on + strand, within TX73_000870 at 186.128 kb on + strand, within TX73_000870 at 186.136 kb on - strand, within TX73_000870 at 186.136 kb on - strand, within TX73_000870 at 186.138 kb on + strand, within TX73_000870 at 186.141 kb on - strand, within TX73_000870 at 186.141 kb on - strand, within TX73_000870 at 186.143 kb on + strand, within TX73_000870 at 186.148 kb on + strand, within TX73_000870 at 186.156 kb on - strand, within TX73_000870 at 186.156 kb on - strand, within TX73_000870 at 186.162 kb on + strand, within TX73_000870 at 186.163 kb on + strand, within TX73_000870 at 186.163 kb on + strand, within TX73_000870 at 186.168 kb on + strand, within TX73_000870
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark remove 184,534 - +0.5 184,546 - +0.6 184,562 + -0.8 185,178 + +0.7 185,178 + +0.3 185,207 + -1.8 185,215 - -0.4 185,215 - +0.4 185,252 - +0.2 185,254 + -0.1 185,263 - +0.6 185,277 - +0.5 185,291 + -0.4 185,341 + -2.1 185,355 + +2.0 185,360 + -1.4 185,360 + -0.4 185,360 + -0.0 185,360 + -1.2 185,360 + +0.1 185,360 + +0.6 185,362 + +0.8 185,368 - +0.8 185,368 - +0.3 185,368 - -0.6 185,368 - +0.5 185,368 - +0.8 185,368 - -0.2 185,368 - +0.2 185,399 + -0.5 185,415 + -0.1 185,429 + +0.3 185,429 + +0.3 185,429 + -0.3 185,432 - -0.2 185,432 - +0.3 185,437 - +1.2 185,437 - +0.3 185,438 - +0.1 185,447 + -0.1 185,447 + -1.4 185,447 + -0.4 185,447 + +0.5 185,448 - +0.1 185,455 - +0.3 185,455 - +0.2 185,455 - -0.9 185,455 - -0.6 185,478 + -1.7 185,478 + -1.4 185,478 + +1.3 185,478 + +1.4 185,478 + -0.3 185,478 + +1.0 185,478 + +0.8 185,486 - +0.1 185,486 - -0.0 185,486 - -0.6 185,486 - -1.3 185,521 - TX73_000865 0.17 +0.2 185,536 - TX73_000865 0.21 -1.1 185,561 + TX73_000865 0.27 +0.9 185,569 - TX73_000865 0.29 +0.2 185,595 - TX73_000865 0.36 -0.1 185,599 + TX73_000865 0.37 +0.1 185,609 + TX73_000865 0.40 +0.6 185,617 - TX73_000865 0.42 +0.7 185,617 - TX73_000865 0.42 +0.4 185,619 + TX73_000865 0.43 +1.0 185,644 + TX73_000865 0.49 -0.6 185,653 + TX73_000865 0.52 -0.4 185,653 + TX73_000865 0.52 +0.3 185,662 + TX73_000865 0.54 +0.3 185,667 + TX73_000865 0.55 -1.3 185,670 - TX73_000865 0.56 +0.9 185,671 - TX73_000865 0.56 -0.2 185,701 + TX73_000865 0.64 -0.4 185,722 + TX73_000865 0.70 -0.2 185,722 - TX73_000865 0.70 -0.1 185,741 + TX73_000865 0.75 -0.9 185,746 + TX73_000865 0.76 -0.4 185,762 + TX73_000865 0.80 +1.2 185,770 - TX73_000865 0.83 -0.8 185,786 + TX73_000865 0.87 +0.9 185,787 + TX73_000865 0.87 +0.4 185,788 + TX73_000865 0.87 -0.0 185,796 + TX73_000865 0.89 -0.2 185,796 + TX73_000865 0.89 -0.1 185,796 + TX73_000865 0.89 -0.2 185,796 + TX73_000865 0.89 -1.3 185,796 + TX73_000865 0.89 -0.0 185,796 + TX73_000865 0.89 -0.1 185,804 + -2.0 185,804 + +0.1 185,804 - -0.7 185,804 - -0.1 185,804 - +0.1 185,804 - +0.4 185,806 + -0.1 185,829 + -1.2 185,844 - -0.1 185,854 - -0.0 185,876 + -0.2 185,915 + +0.6 185,954 + +1.5 185,954 + -0.5 185,963 - -0.9 185,987 + TX73_000870 0.13 -0.3 185,987 + TX73_000870 0.13 +0.9 185,989 - TX73_000870 0.13 +0.9 185,995 - TX73_000870 0.14 -1.9 186,000 + TX73_000870 0.16 +1.1 186,002 + TX73_000870 0.16 +0.1 186,045 - TX73_000870 0.25 -1.0 186,045 - TX73_000870 0.25 -0.4 186,057 + TX73_000870 0.27 +0.1 186,122 + TX73_000870 0.41 -0.4 186,128 + TX73_000870 0.42 +0.7 186,136 - TX73_000870 0.44 +1.1 186,136 - TX73_000870 0.44 -0.5 186,138 + TX73_000870 0.44 +0.2 186,141 - TX73_000870 0.45 -0.4 186,141 - TX73_000870 0.45 -0.5 186,143 + TX73_000870 0.45 -0.6 186,148 + TX73_000870 0.46 +0.2 186,156 - TX73_000870 0.48 +1.4 186,156 - TX73_000870 0.48 +0.4 186,162 + TX73_000870 0.49 -0.5 186,163 + TX73_000870 0.49 -0.7 186,163 + TX73_000870 0.49 +0.2 186,168 + TX73_000870 0.50 +1.1
Or see this region's nucleotide sequence