Experiment: PM with succinate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000715 and TX73_000720 are separated by 66 nucleotides TX73_000720 and TX73_000725 are separated by 60 nucleotides TX73_000725 and TX73_000730 overlap by 1 nucleotides
TX73_000715: TX73_000715 - methyl-accepting chemotaxis protein, at 157,930 to 160,131
_000715
TX73_000720: TX73_000720 - chemotaxis protein CheW, at 160,198 to 160,686
_000720
TX73_000725: TX73_000725 - chemotaxis protein CheW, at 160,747 to 161,217
_000725
TX73_000730: TX73_000730 - chemotaxis protein CheA, at 161,217 to 163,283
_000730
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.304 kb on + strand, within TX73_000715 at 159.311 kb on + strand, within TX73_000715 at 159.347 kb on + strand, within TX73_000715 at 159.407 kb on - strand, within TX73_000715 at 159.407 kb on - strand, within TX73_000715 at 159.439 kb on - strand, within TX73_000715 at 159.474 kb on + strand, within TX73_000715 at 159.514 kb on - strand, within TX73_000715 at 159.516 kb on - strand, within TX73_000715 at 159.553 kb on + strand, within TX73_000715 at 159.590 kb on + strand, within TX73_000715 at 159.590 kb on + strand, within TX73_000715 at 159.598 kb on - strand, within TX73_000715 at 159.598 kb on - strand, within TX73_000715 at 159.598 kb on - strand, within TX73_000715 at 159.692 kb on + strand, within TX73_000715 at 159.698 kb on - strand, within TX73_000715 at 159.700 kb on - strand, within TX73_000715 at 159.701 kb on + strand, within TX73_000715 at 159.701 kb on + strand, within TX73_000715 at 159.701 kb on + strand, within TX73_000715 at 159.709 kb on - strand, within TX73_000715 at 159.709 kb on - strand, within TX73_000715 at 159.709 kb on - strand, within TX73_000715 at 159.709 kb on - strand, within TX73_000715 at 159.714 kb on - strand, within TX73_000715 at 159.723 kb on + strand, within TX73_000715 at 159.850 kb on + strand, within TX73_000715 at 159.893 kb on + strand, within TX73_000715 at 159.903 kb on + strand, within TX73_000715 at 159.911 kb on - strand at 160.173 kb on + strand at 160.245 kb on + strand at 160.253 kb on - strand, within TX73_000720 at 160.300 kb on + strand, within TX73_000720 at 160.359 kb on + strand, within TX73_000720 at 160.502 kb on - strand, within TX73_000720 at 160.625 kb on - strand, within TX73_000720 at 160.661 kb on + strand at 160.697 kb on + strand at 160.697 kb on + strand at 160.752 kb on - strand at 160.769 kb on - strand at 160.821 kb on - strand, within TX73_000725 at 160.892 kb on - strand, within TX73_000725 at 161.046 kb on + strand, within TX73_000725 at 161.054 kb on - strand, within TX73_000725 at 161.069 kb on - strand, within TX73_000725 at 161.091 kb on - strand, within TX73_000725 at 161.115 kb on + strand, within TX73_000725 at 161.307 kb on + strand at 161.331 kb on - strand at 161.500 kb on - strand, within TX73_000730 at 161.599 kb on + strand, within TX73_000730 at 161.643 kb on - strand, within TX73_000730 at 161.645 kb on + strand, within TX73_000730
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark remove 159,304 + TX73_000715 0.62 +1.4 159,311 + TX73_000715 0.63 -0.7 159,347 + TX73_000715 0.64 -1.2 159,407 - TX73_000715 0.67 +0.8 159,407 - TX73_000715 0.67 -0.4 159,439 - TX73_000715 0.69 +0.8 159,474 + TX73_000715 0.70 -0.5 159,514 - TX73_000715 0.72 +0.0 159,516 - TX73_000715 0.72 +0.5 159,553 + TX73_000715 0.74 +2.3 159,590 + TX73_000715 0.75 -1.1 159,590 + TX73_000715 0.75 -1.0 159,598 - TX73_000715 0.76 -2.0 159,598 - TX73_000715 0.76 -0.7 159,598 - TX73_000715 0.76 -0.0 159,692 + TX73_000715 0.80 +1.8 159,698 - TX73_000715 0.80 +0.7 159,700 - TX73_000715 0.80 +0.4 159,701 + TX73_000715 0.80 -0.4 159,701 + TX73_000715 0.80 +0.7 159,701 + TX73_000715 0.80 +1.1 159,709 - TX73_000715 0.81 -0.3 159,709 - TX73_000715 0.81 -0.7 159,709 - TX73_000715 0.81 +0.7 159,709 - TX73_000715 0.81 +1.1 159,714 - TX73_000715 0.81 -0.9 159,723 + TX73_000715 0.81 -0.2 159,850 + TX73_000715 0.87 -0.0 159,893 + TX73_000715 0.89 +0.9 159,903 + TX73_000715 0.90 -0.1 159,911 - -0.2 160,173 + -0.6 160,245 + -1.6 160,253 - TX73_000720 0.11 +0.0 160,300 + TX73_000720 0.21 +1.8 160,359 + TX73_000720 0.33 +0.0 160,502 - TX73_000720 0.62 +0.3 160,625 - TX73_000720 0.87 +1.4 160,661 + -0.5 160,697 + -2.6 160,697 + -0.6 160,752 - -0.1 160,769 - -0.1 160,821 - TX73_000725 0.16 +0.6 160,892 - TX73_000725 0.31 -1.9 161,046 + TX73_000725 0.63 +0.1 161,054 - TX73_000725 0.65 +1.6 161,069 - TX73_000725 0.68 +0.2 161,091 - TX73_000725 0.73 +1.4 161,115 + TX73_000725 0.78 -0.2 161,307 + +0.8 161,331 - +0.1 161,500 - TX73_000730 0.14 +0.4 161,599 + TX73_000730 0.18 +3.0 161,643 - TX73_000730 0.21 +0.6 161,645 + TX73_000730 0.21 -0.6
Or see this region's nucleotide sequence