Experiment: PM with succinate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024480 and TX73_024485 are separated by 244 nucleotides TX73_024485 and TX73_024490 overlap by 28 nucleotides TX73_024490 and TX73_024495 are separated by 147 nucleotides
TX73_024480: TX73_024480 - tetratricopeptide repeat protein, at 5,312,819 to 5,314,567
_024480
TX73_024485: TX73_024485 - peptidase, at 5,314,812 to 5,315,783
_024485
TX73_024490: TX73_024490 - DUF2478 domain-containing protein, at 5,315,756 to 5,316,346
_024490
TX73_024495: TX73_024495 - molybdenum ABC transporter ATP-binding protein, at 5,316,494 to 5,317,615
_024495
Position (kb) 5314
5315
5316 Strain fitness (log2 ratio) -1
0
1
2 at 5313.919 kb on + strand, within TX73_024480 at 5313.927 kb on + strand, within TX73_024480 at 5313.927 kb on - strand, within TX73_024480 at 5313.937 kb on + strand, within TX73_024480 at 5313.937 kb on + strand, within TX73_024480 at 5313.945 kb on + strand, within TX73_024480 at 5313.945 kb on - strand, within TX73_024480 at 5313.945 kb on - strand, within TX73_024480 at 5313.945 kb on - strand, within TX73_024480 at 5313.945 kb on - strand, within TX73_024480 at 5313.949 kb on + strand, within TX73_024480 at 5313.949 kb on + strand, within TX73_024480 at 5313.952 kb on - strand, within TX73_024480 at 5313.963 kb on - strand, within TX73_024480 at 5313.985 kb on - strand, within TX73_024480 at 5314.010 kb on + strand, within TX73_024480 at 5314.084 kb on + strand, within TX73_024480 at 5314.113 kb on - strand, within TX73_024480 at 5314.121 kb on + strand, within TX73_024480 at 5314.129 kb on - strand, within TX73_024480 at 5314.153 kb on + strand, within TX73_024480 at 5314.176 kb on - strand, within TX73_024480 at 5314.189 kb on + strand, within TX73_024480 at 5314.201 kb on - strand, within TX73_024480 at 5314.226 kb on + strand, within TX73_024480 at 5314.226 kb on + strand, within TX73_024480 at 5314.241 kb on + strand, within TX73_024480 at 5314.244 kb on - strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.246 kb on + strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.254 kb on - strand, within TX73_024480 at 5314.303 kb on + strand, within TX73_024480 at 5314.303 kb on + strand, within TX73_024480 at 5314.303 kb on + strand, within TX73_024480 at 5314.303 kb on + strand, within TX73_024480 at 5314.336 kb on + strand, within TX73_024480 at 5314.344 kb on - strand, within TX73_024480 at 5314.345 kb on - strand, within TX73_024480 at 5314.374 kb on + strand, within TX73_024480 at 5314.382 kb on - strand, within TX73_024480 at 5314.386 kb on - strand, within TX73_024480 at 5314.389 kb on + strand, within TX73_024480 at 5314.400 kb on + strand at 5314.408 kb on - strand at 5314.411 kb on - strand at 5314.461 kb on + strand at 5314.469 kb on - strand at 5314.483 kb on + strand at 5314.521 kb on - strand at 5314.529 kb on - strand at 5314.529 kb on - strand at 5314.537 kb on + strand at 5314.545 kb on - strand at 5314.546 kb on + strand at 5314.576 kb on - strand at 5314.580 kb on + strand at 5314.588 kb on - strand at 5314.603 kb on + strand at 5314.603 kb on - strand at 5314.644 kb on + strand at 5314.663 kb on - strand at 5314.669 kb on + strand at 5314.692 kb on + strand at 5314.692 kb on + strand at 5314.700 kb on - strand at 5314.756 kb on - strand at 5314.807 kb on + strand at 5314.807 kb on + strand at 5314.807 kb on + strand at 5314.809 kb on + strand at 5314.815 kb on - strand at 5314.815 kb on - strand at 5314.815 kb on - strand at 5314.817 kb on - strand at 5314.821 kb on - strand at 5314.845 kb on + strand at 5314.846 kb on - strand at 5314.918 kb on + strand, within TX73_024485 at 5314.927 kb on + strand, within TX73_024485 at 5314.943 kb on + strand, within TX73_024485 at 5314.943 kb on + strand, within TX73_024485 at 5314.943 kb on + strand, within TX73_024485 at 5314.943 kb on + strand, within TX73_024485 at 5314.943 kb on + strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.951 kb on - strand, within TX73_024485 at 5314.952 kb on + strand, within TX73_024485 at 5314.960 kb on - strand, within TX73_024485 at 5314.966 kb on - strand, within TX73_024485 at 5314.989 kb on + strand, within TX73_024485 at 5314.989 kb on + strand, within TX73_024485 at 5314.997 kb on - strand, within TX73_024485 at 5315.013 kb on + strand, within TX73_024485 at 5315.021 kb on - strand, within TX73_024485 at 5315.044 kb on + strand, within TX73_024485 at 5315.052 kb on + strand, within TX73_024485 at 5315.052 kb on + strand, within TX73_024485 at 5315.052 kb on + strand, within TX73_024485 at 5315.055 kb on - strand, within TX73_024485 at 5315.060 kb on - strand, within TX73_024485 at 5315.060 kb on - strand, within TX73_024485 at 5315.060 kb on - strand, within TX73_024485 at 5315.060 kb on - strand, within TX73_024485 at 5315.060 kb on - strand, within TX73_024485 at 5315.064 kb on + strand, within TX73_024485 at 5315.069 kb on + strand, within TX73_024485 at 5315.113 kb on - strand, within TX73_024485 at 5315.145 kb on + strand, within TX73_024485 at 5315.163 kb on - strand, within TX73_024485 at 5315.180 kb on - strand, within TX73_024485 at 5315.188 kb on + strand, within TX73_024485 at 5315.196 kb on + strand, within TX73_024485 at 5315.207 kb on + strand, within TX73_024485 at 5315.231 kb on + strand, within TX73_024485 at 5315.239 kb on - strand, within TX73_024485 at 5315.249 kb on + strand, within TX73_024485 at 5315.249 kb on + strand, within TX73_024485 at 5315.275 kb on + strand, within TX73_024485 at 5315.275 kb on + strand, within TX73_024485 at 5315.279 kb on - strand, within TX73_024485 at 5315.279 kb on - strand, within TX73_024485 at 5315.294 kb on + strand, within TX73_024485 at 5315.302 kb on - strand, within TX73_024485 at 5315.326 kb on + strand, within TX73_024485 at 5315.343 kb on + strand, within TX73_024485 at 5315.349 kb on + strand, within TX73_024485 at 5315.349 kb on + strand, within TX73_024485 at 5315.349 kb on + strand, within TX73_024485 at 5315.351 kb on + strand, within TX73_024485 at 5315.357 kb on - strand, within TX73_024485 at 5315.369 kb on + strand, within TX73_024485 at 5315.437 kb on - strand, within TX73_024485 at 5315.442 kb on + strand, within TX73_024485 at 5315.442 kb on + strand, within TX73_024485 at 5315.445 kb on + strand, within TX73_024485 at 5315.450 kb on - strand, within TX73_024485 at 5315.468 kb on - strand, within TX73_024485 at 5315.473 kb on + strand, within TX73_024485 at 5315.481 kb on - strand, within TX73_024485 at 5315.487 kb on + strand, within TX73_024485 at 5315.524 kb on - strand, within TX73_024485 at 5315.526 kb on + strand, within TX73_024485 at 5315.528 kb on + strand, within TX73_024485 at 5315.585 kb on - strand, within TX73_024485 at 5315.617 kb on - strand, within TX73_024485 at 5315.649 kb on + strand, within TX73_024485 at 5315.659 kb on - strand, within TX73_024485 at 5315.667 kb on + strand, within TX73_024485 at 5315.690 kb on - strand at 5315.692 kb on - strand at 5315.701 kb on + strand at 5315.701 kb on + strand at 5315.701 kb on + strand at 5315.701 kb on + strand at 5315.709 kb on - strand at 5315.709 kb on - strand at 5315.709 kb on - strand at 5315.711 kb on + strand at 5315.719 kb on - strand at 5315.789 kb on - strand at 5315.826 kb on + strand, within TX73_024490 at 5315.842 kb on + strand, within TX73_024490 at 5315.842 kb on + strand, within TX73_024490 at 5315.853 kb on + strand, within TX73_024490 at 5315.870 kb on - strand, within TX73_024490 at 5315.878 kb on + strand, within TX73_024490 at 5315.886 kb on - strand, within TX73_024490 at 5315.896 kb on - strand, within TX73_024490 at 5315.938 kb on - strand, within TX73_024490 at 5315.969 kb on + strand, within TX73_024490 at 5315.983 kb on + strand, within TX73_024490 at 5316.016 kb on + strand, within TX73_024490 at 5316.049 kb on + strand, within TX73_024490 at 5316.064 kb on + strand, within TX73_024490 at 5316.085 kb on - strand, within TX73_024490 at 5316.126 kb on + strand, within TX73_024490 at 5316.155 kb on + strand, within TX73_024490 at 5316.202 kb on + strand, within TX73_024490 at 5316.213 kb on - strand, within TX73_024490 at 5316.237 kb on + strand, within TX73_024490 at 5316.238 kb on + strand, within TX73_024490 at 5316.245 kb on - strand, within TX73_024490 at 5316.246 kb on + strand, within TX73_024490 at 5316.333 kb on - strand at 5316.531 kb on + strand at 5316.531 kb on + strand at 5316.539 kb on - strand at 5316.579 kb on + strand at 5316.617 kb on + strand, within TX73_024495 at 5316.617 kb on + strand, within TX73_024495 at 5316.633 kb on - strand, within TX73_024495 at 5316.646 kb on - strand, within TX73_024495
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark remove 5,313,919 + TX73_024480 0.63 +0.6 5,313,927 + TX73_024480 0.63 +0.5 5,313,927 - TX73_024480 0.63 +0.7 5,313,937 + TX73_024480 0.64 +0.7 5,313,937 + TX73_024480 0.64 +0.9 5,313,945 + TX73_024480 0.64 -0.4 5,313,945 - TX73_024480 0.64 -0.9 5,313,945 - TX73_024480 0.64 +0.5 5,313,945 - TX73_024480 0.64 +0.3 5,313,945 - TX73_024480 0.64 +0.1 5,313,949 + TX73_024480 0.65 -0.5 5,313,949 + TX73_024480 0.65 -0.5 5,313,952 - TX73_024480 0.65 +0.0 5,313,963 - TX73_024480 0.65 +0.2 5,313,985 - TX73_024480 0.67 +0.9 5,314,010 + TX73_024480 0.68 -0.4 5,314,084 + TX73_024480 0.72 +0.2 5,314,113 - TX73_024480 0.74 -0.2 5,314,121 + TX73_024480 0.74 +0.6 5,314,129 - TX73_024480 0.75 +0.2 5,314,153 + TX73_024480 0.76 +0.1 5,314,176 - TX73_024480 0.78 -0.5 5,314,189 + TX73_024480 0.78 +0.5 5,314,201 - TX73_024480 0.79 +0.7 5,314,226 + TX73_024480 0.80 +0.2 5,314,226 + TX73_024480 0.80 +0.8 5,314,241 + TX73_024480 0.81 +0.3 5,314,244 - TX73_024480 0.81 -0.4 5,314,246 + TX73_024480 0.82 +0.3 5,314,246 + TX73_024480 0.82 -1.1 5,314,246 + TX73_024480 0.82 +0.5 5,314,246 + TX73_024480 0.82 -0.1 5,314,246 + TX73_024480 0.82 +0.7 5,314,246 + TX73_024480 0.82 +0.5 5,314,254 - TX73_024480 0.82 +0.2 5,314,254 - TX73_024480 0.82 -0.6 5,314,254 - TX73_024480 0.82 +0.2 5,314,254 - TX73_024480 0.82 +1.2 5,314,254 - TX73_024480 0.82 +0.1 5,314,254 - TX73_024480 0.82 +0.4 5,314,303 + TX73_024480 0.85 +0.2 5,314,303 + TX73_024480 0.85 -0.0 5,314,303 + TX73_024480 0.85 -0.3 5,314,303 + TX73_024480 0.85 +0.2 5,314,336 + TX73_024480 0.87 +0.5 5,314,344 - TX73_024480 0.87 +0.8 5,314,345 - TX73_024480 0.87 +0.7 5,314,374 + TX73_024480 0.89 -0.2 5,314,382 - TX73_024480 0.89 -0.2 5,314,386 - TX73_024480 0.90 +0.3 5,314,389 + TX73_024480 0.90 -0.0 5,314,400 + -0.8 5,314,408 - -0.4 5,314,411 - -0.3 5,314,461 + +0.1 5,314,469 - -0.4 5,314,483 + -0.0 5,314,521 - -0.1 5,314,529 - +0.8 5,314,529 - -0.0 5,314,537 + +0.6 5,314,545 - +0.1 5,314,546 + +0.0 5,314,576 - -0.3 5,314,580 + +0.2 5,314,588 - -0.1 5,314,603 + -0.5 5,314,603 - -0.5 5,314,644 + -0.4 5,314,663 - +1.2 5,314,669 + -1.3 5,314,692 + +0.3 5,314,692 + -0.6 5,314,700 - -0.4 5,314,756 - -0.3 5,314,807 + -0.1 5,314,807 + -1.4 5,314,807 + -0.4 5,314,809 + -0.4 5,314,815 - +0.4 5,314,815 - +0.0 5,314,815 - +0.0 5,314,817 - +0.1 5,314,821 - +1.1 5,314,845 + +0.7 5,314,846 - +0.3 5,314,918 + TX73_024485 0.11 -0.5 5,314,927 + TX73_024485 0.12 +0.1 5,314,943 + TX73_024485 0.13 +0.6 5,314,943 + TX73_024485 0.13 +0.4 5,314,943 + TX73_024485 0.13 +0.4 5,314,943 + TX73_024485 0.13 +1.8 5,314,943 + TX73_024485 0.13 -0.1 5,314,951 - TX73_024485 0.14 +0.4 5,314,951 - TX73_024485 0.14 +0.7 5,314,951 - TX73_024485 0.14 +0.2 5,314,951 - TX73_024485 0.14 -0.1 5,314,951 - TX73_024485 0.14 -0.5 5,314,951 - TX73_024485 0.14 +0.1 5,314,951 - TX73_024485 0.14 +0.8 5,314,952 + TX73_024485 0.14 +1.0 5,314,960 - TX73_024485 0.15 +0.9 5,314,966 - TX73_024485 0.16 +0.7 5,314,989 + TX73_024485 0.18 -0.3 5,314,989 + TX73_024485 0.18 +0.9 5,314,997 - TX73_024485 0.19 +0.6 5,315,013 + TX73_024485 0.21 +0.1 5,315,021 - TX73_024485 0.22 +0.4 5,315,044 + TX73_024485 0.24 +0.5 5,315,052 + TX73_024485 0.25 +1.0 5,315,052 + TX73_024485 0.25 +0.1 5,315,052 + TX73_024485 0.25 +0.3 5,315,055 - TX73_024485 0.25 -0.2 5,315,060 - TX73_024485 0.26 +1.3 5,315,060 - TX73_024485 0.26 +0.6 5,315,060 - TX73_024485 0.26 +0.1 5,315,060 - TX73_024485 0.26 +0.8 5,315,060 - TX73_024485 0.26 -0.0 5,315,064 + TX73_024485 0.26 +0.8 5,315,069 + TX73_024485 0.26 +0.4 5,315,113 - TX73_024485 0.31 +1.1 5,315,145 + TX73_024485 0.34 +0.4 5,315,163 - TX73_024485 0.36 +0.9 5,315,180 - TX73_024485 0.38 +0.9 5,315,188 + TX73_024485 0.39 +0.2 5,315,196 + TX73_024485 0.40 +0.3 5,315,207 + TX73_024485 0.41 -0.2 5,315,231 + TX73_024485 0.43 +0.5 5,315,239 - TX73_024485 0.44 -0.3 5,315,249 + TX73_024485 0.45 +0.1 5,315,249 + TX73_024485 0.45 -0.4 5,315,275 + TX73_024485 0.48 +0.0 5,315,275 + TX73_024485 0.48 +0.4 5,315,279 - TX73_024485 0.48 +0.6 5,315,279 - TX73_024485 0.48 +0.4 5,315,294 + TX73_024485 0.50 -0.4 5,315,302 - TX73_024485 0.50 +0.7 5,315,326 + TX73_024485 0.53 +0.0 5,315,343 + TX73_024485 0.55 +1.4 5,315,349 + TX73_024485 0.55 +0.7 5,315,349 + TX73_024485 0.55 +0.4 5,315,349 + TX73_024485 0.55 +1.5 5,315,351 + TX73_024485 0.55 +0.1 5,315,357 - TX73_024485 0.56 +0.7 5,315,369 + TX73_024485 0.57 -0.2 5,315,437 - TX73_024485 0.64 +0.4 5,315,442 + TX73_024485 0.65 -0.2 5,315,442 + TX73_024485 0.65 +0.3 5,315,445 + TX73_024485 0.65 +0.2 5,315,450 - TX73_024485 0.66 +0.4 5,315,468 - TX73_024485 0.67 +0.8 5,315,473 + TX73_024485 0.68 +1.6 5,315,481 - TX73_024485 0.69 +0.5 5,315,487 + TX73_024485 0.69 +1.9 5,315,524 - TX73_024485 0.73 +0.5 5,315,526 + TX73_024485 0.73 +0.8 5,315,528 + TX73_024485 0.74 -0.0 5,315,585 - TX73_024485 0.80 +0.7 5,315,617 - TX73_024485 0.83 +0.8 5,315,649 + TX73_024485 0.86 +0.8 5,315,659 - TX73_024485 0.87 +0.1 5,315,667 + TX73_024485 0.88 +0.8 5,315,690 - -0.8 5,315,692 - +0.2 5,315,701 + +0.7 5,315,701 + -0.1 5,315,701 + +0.1 5,315,701 + -0.0 5,315,709 - +0.7 5,315,709 - +1.0 5,315,709 - +0.5 5,315,711 + +1.0 5,315,719 - +0.7 5,315,789 - +0.9 5,315,826 + TX73_024490 0.12 +0.0 5,315,842 + TX73_024490 0.15 +0.4 5,315,842 + TX73_024490 0.15 +0.6 5,315,853 + TX73_024490 0.16 +0.5 5,315,870 - TX73_024490 0.19 +0.0 5,315,878 + TX73_024490 0.21 -0.1 5,315,886 - TX73_024490 0.22 +0.6 5,315,896 - TX73_024490 0.24 +1.3 5,315,938 - TX73_024490 0.31 -0.4 5,315,969 + TX73_024490 0.36 +0.8 5,315,983 + TX73_024490 0.38 -0.1 5,316,016 + TX73_024490 0.44 -0.3 5,316,049 + TX73_024490 0.50 -0.1 5,316,064 + TX73_024490 0.52 +0.5 5,316,085 - TX73_024490 0.56 +0.3 5,316,126 + TX73_024490 0.63 +0.3 5,316,155 + TX73_024490 0.68 +0.0 5,316,202 + TX73_024490 0.75 -0.0 5,316,213 - TX73_024490 0.77 -0.0 5,316,237 + TX73_024490 0.81 -0.0 5,316,238 + TX73_024490 0.82 +1.2 5,316,245 - TX73_024490 0.83 +0.8 5,316,246 + TX73_024490 0.83 -0.2 5,316,333 - +0.3 5,316,531 + -1.4 5,316,531 + -0.1 5,316,539 - -0.3 5,316,579 + -0.6 5,316,617 + TX73_024495 0.11 -0.3 5,316,617 + TX73_024495 0.11 +0.1 5,316,633 - TX73_024495 0.12 +0.8 5,316,646 - TX73_024495 0.14 -0.6
Or see this region's nucleotide sequence