Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017205

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,755,443	-				+0.5
3,755,458	-				-0.5
3,755,477	-				+1.5
3,755,496	+				-0.1
3,755,517	+				-0.0
3,755,528	-				+0.1
3,755,545	+				-0.7
3,755,545	+				+0.2
3,755,553	-				+0.3
3,755,553	-				-0.2
3,755,605	+				-0.3
3,755,606	+				+0.7
3,755,613	-				+1.0
3,755,614	-				-0.2
3,755,626	+				+0.1
3,755,626	+				+0.7
3,755,626	+				-0.1
3,755,634	-				+1.0
3,755,634	-				-0.1
3,755,634	-				-0.2
3,755,634	-				-0.6
3,755,639	-				+0.6
3,755,657	+				+1.7
3,755,720	+		TX73_017200	0.22	+0.6
3,755,720	+		TX73_017200	0.22	+0.7
3,755,721	-		TX73_017200	0.22	-0.1
3,755,730	+		TX73_017200	0.24	-0.7
3,755,730	+		TX73_017200	0.24	-0.1
3,755,730	+		TX73_017200	0.24	-2.0
3,755,730	+		TX73_017200	0.24	-0.1
3,755,738	-		TX73_017200	0.26	-0.1
3,755,750	-		TX73_017200	0.29	+0.3
3,755,752	+		TX73_017200	0.29	+0.1
3,755,759	+		TX73_017200	0.31	+0.2
3,755,760	-		TX73_017200	0.31	-1.0
3,755,764	+		TX73_017200	0.32	-0.5
3,755,769	+		TX73_017200	0.34	+0.5
3,755,769	+		TX73_017200	0.34	-0.3
3,755,786	+		TX73_017200	0.38	+0.4
3,755,794	-		TX73_017200	0.40	+0.2
3,755,821	+		TX73_017200	0.46	+1.1
3,755,822	+		TX73_017200	0.46	-0.4
3,755,822	+		TX73_017200	0.46	+0.5
3,755,822	+		TX73_017200	0.46	+1.0
3,755,822	+		TX73_017200	0.46	-0.5
3,755,822	+		TX73_017200	0.46	-0.4
3,755,822	+		TX73_017200	0.46	-0.2
3,755,822	+		TX73_017200	0.46	-0.5
3,755,822	+		TX73_017200	0.46	+0.1
3,755,830	-		TX73_017200	0.48	+0.6
3,755,830	-		TX73_017200	0.48	+0.6
3,755,830	-		TX73_017200	0.48	+2.1
3,755,830	-		TX73_017200	0.48	+1.0
3,755,830	-		TX73_017200	0.48	+0.6
3,755,897	-		TX73_017200	0.64	+0.1
3,755,900	+		TX73_017200	0.65	-0.4
3,755,928	+		TX73_017200	0.72	+0.4
3,755,937	-		TX73_017200	0.74	-0.1
3,755,950	-		TX73_017200	0.77	-0.1
3,755,960	+		TX73_017200	0.79	+0.7
3,755,968	-		TX73_017200	0.81	+2.4
3,756,017	-				+0.0
3,756,053	+				+0.3
3,756,054	+				-0.7
3,756,054	+				+0.9
3,756,054	+				+0.6
3,756,062	-				-1.1
3,756,072	+				+0.9
3,756,080	-				-0.0
3,756,080	-				-0.0
3,756,080	-				+0.1
3,756,082	+				-0.8
3,756,092	+				+0.2
3,756,120	+				+0.1
3,756,171	+				+1.8
3,756,188	+				-0.1
3,756,226	-				+0.1
3,756,262	+				+0.5
3,756,266	-				+0.5
3,756,268	+				-0.2
3,756,274	-				-0.2
3,756,388	-				-1.5
3,756,430	-				-0.4
3,756,454	-				-0.3
3,756,460	+				+1.1
3,756,474	+				+0.2
3,756,484	+				+0.0
3,756,484	+				-0.3
3,756,499	+				+0.2
3,756,499	+				-0.1
3,756,499	+				-0.6
3,756,499	+				-0.0
3,756,499	+				+0.7
3,756,507	-				-0.6
3,756,507	-				-1.3
3,756,507	-				+0.4
3,756,507	-				+0.1
3,756,507	-				-0.5
3,756,515	+				+0.1
3,756,527	+				-0.1
3,756,556	-				-0.7
3,756,594	-				-0.7
3,756,594	-				+0.6
3,756,603	+		TX73_017205	0.10	-1.2
3,756,613	-		TX73_017205	0.11	-0.5
3,756,613	-		TX73_017205	0.11	+0.3
3,756,613	-		TX73_017205	0.11	-1.3
3,756,613	-		TX73_017205	0.11	-0.4
3,756,650	+		TX73_017205	0.13	-0.5
3,756,700	+		TX73_017205	0.16	+1.5
3,756,708	-		TX73_017205	0.16	+0.0
3,756,708	-		TX73_017205	0.16	+0.0
3,756,719	+		TX73_017205	0.17	+0.2
3,756,719	+		TX73_017205	0.17	+1.8
3,756,727	-		TX73_017205	0.17	+0.1
3,756,728	+		TX73_017205	0.17	-0.5
3,756,736	-		TX73_017205	0.18	-0.8
3,756,756	+		TX73_017205	0.19	+0.2
3,756,756	+		TX73_017205	0.19	-1.0
3,756,756	-		TX73_017205	0.19	+0.2
3,756,764	+		TX73_017205	0.19	+1.3
3,756,764	-		TX73_017205	0.19	+0.0
3,756,764	-		TX73_017205	0.19	+0.1
3,756,772	-		TX73_017205	0.20	+0.7
3,756,809	-		TX73_017205	0.22	-0.5
3,756,810	-		TX73_017205	0.22	+2.2
3,756,885	+		TX73_017205	0.26	+0.3
3,756,903	-		TX73_017205	0.27	+0.0
3,756,905	-		TX73_017205	0.27	+0.5
3,756,922	-		TX73_017205	0.28	-0.2
3,756,930	+		TX73_017205	0.29	+0.2
3,756,933	+		TX73_017205	0.29	+0.7
3,756,944	+		TX73_017205	0.30	-0.4
3,756,961	+		TX73_017205	0.31	-0.0
3,756,981	-		TX73_017205	0.32	-0.1
3,757,002	-		TX73_017205	0.33	-0.4
3,757,059	+		TX73_017205	0.36	-0.3
3,757,072	-		TX73_017205	0.37	+0.0
3,757,079	-		TX73_017205	0.37	-0.3
3,757,081	+		TX73_017205	0.38	-0.1
3,757,081	+		TX73_017205	0.38	-0.3
3,757,104	+		TX73_017205	0.39	+0.6
3,757,137	+		TX73_017205	0.41	-0.1
3,757,140	-		TX73_017205	0.41	+0.5
3,757,142	+		TX73_017205	0.41	-2.6
3,757,142	+		TX73_017205	0.41	+0.0
3,757,145	-		TX73_017205	0.41	-1.8
3,757,145	-		TX73_017205	0.41	-1.0
3,757,145	-		TX73_017205	0.41	+0.5
3,757,150	-		TX73_017205	0.41	+0.9
3,757,175	+		TX73_017205	0.43	+0.1
3,757,186	+		TX73_017205	0.43	-0.1
3,757,205	+		TX73_017205	0.45	-0.2
3,757,205	+		TX73_017205	0.45	-1.9
3,757,205	+		TX73_017205	0.45	+0.1
3,757,205	+		TX73_017205	0.45	-0.0
3,757,205	+		TX73_017205	0.45	+0.2
3,757,205	+		TX73_017205	0.45	+1.0
3,757,213	-		TX73_017205	0.45	+0.9
3,757,216	+		TX73_017205	0.45	+0.1
3,757,219	+		TX73_017205	0.45	-1.5
3,757,265	+		TX73_017205	0.48	-0.7
3,757,283	+		TX73_017205	0.49	+0.2
3,757,294	+		TX73_017205	0.50	-1.6
3,757,317	-		TX73_017205	0.51	-0.3
3,757,334	+		TX73_017205	0.52	+0.2
3,757,342	+		TX73_017205	0.52	+0.3
3,757,342	-		TX73_017205	0.52	+0.2
3,757,345	-		TX73_017205	0.53	+0.1
3,757,350	-		TX73_017205	0.53	-0.6
3,757,397	-		TX73_017205	0.56	-0.2
3,757,410	+		TX73_017205	0.56	-0.3
3,757,461	-		TX73_017205	0.59	+0.4
3,757,486	+		TX73_017205	0.61	+0.4
3,757,494	-		TX73_017205	0.61	+0.1
3,757,522	+		TX73_017205	0.63	-0.2
3,757,564	-		TX73_017205	0.65	+0.1
3,757,605	-		TX73_017205	0.67	-0.5
3,757,605	-		TX73_017205	0.67	-0.7
3,757,618	+		TX73_017205	0.68	-0.3
3,757,656	-		TX73_017205	0.70	-1.1
3,757,684	-		TX73_017205	0.72	-0.1
3,757,687	-		TX73_017205	0.72	-0.8
3,757,697	+		TX73_017205	0.73	+0.6
3,757,704	+		TX73_017205	0.73	+0.3
3,757,738	-		TX73_017205	0.75	-0.4
3,757,743	+		TX73_017205	0.75	-0.3
3,757,745	-		TX73_017205	0.75	+0.2
3,757,789	+		TX73_017205	0.78	-0.9
3,757,804	-		TX73_017205	0.79	-1.5
3,757,809	-		TX73_017205	0.79	-0.3
3,757,870	+		TX73_017205	0.83	+0.9
3,757,878	-		TX73_017205	0.83	-0.2
3,757,890	-		TX73_017205	0.84	+0.3
3,757,890	-		TX73_017205	0.84	-0.7
3,757,890	-		TX73_017205	0.84	+0.4
3,757,890	-		TX73_017205	0.84	+0.8
3,757,892	+		TX73_017205	0.84	+0.7
3,757,900	-		TX73_017205	0.84	-0.4
3,757,915	+		TX73_017205	0.85	+0.2
3,757,915	+		TX73_017205	0.85	-0.0
3,757,931	+		TX73_017205	0.86	+0.3
3,757,959	-		TX73_017205	0.88	-0.2
3,757,991	-		TX73_017205	0.89	+0.1
3,758,031	-				+0.4
3,758,055	-				-0.3
3,758,097	-				-0.7
3,758,204	+				-0.2
3,758,376	-				-0.1
3,758,402	-				-1.0
3,758,539	+				+1.0
3,758,704	+				-1.0
3,758,714	+				-0.2
3,758,836	+		TX73_017210	0.27	-0.9
3,758,844	-		TX73_017210	0.29	+0.6
3,758,885	-		TX73_017210	0.39	-0.8
3,758,937	+		TX73_017210	0.53	-0.3
3,759,019	-		TX73_017210	0.74	+0.4
3,759,024	-		TX73_017210	0.76	+0.2
3,759,085	+				-0.4
3,759,093	-				-0.4
3,759,093	-				+0.0
3,759,099	+				+0.4