Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011435

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
2,501,684	-		TX73_011430	0.71	+0.9
2,501,684	-		TX73_011430	0.71	-0.4
2,501,684	-		TX73_011430	0.71	-0.1
2,501,703	+		TX73_011430	0.71	-0.0
2,501,703	+		TX73_011430	0.71	-0.2
2,501,707	+		TX73_011430	0.71	-1.0
2,501,711	-		TX73_011430	0.72	-0.3
2,501,711	-		TX73_011430	0.72	-2.0
2,501,737	-		TX73_011430	0.72	-0.3
2,501,752	+		TX73_011430	0.73	+0.8
2,501,752	+		TX73_011430	0.73	-0.7
2,501,765	+		TX73_011430	0.73	-0.3
2,501,771	+		TX73_011430	0.73	-0.0
2,501,806	-		TX73_011430	0.74	-0.1
2,501,806	-		TX73_011430	0.74	-0.3
2,501,849	+		TX73_011430	0.76	-0.1
2,501,856	+		TX73_011430	0.76	+0.4
2,501,856	+		TX73_011430	0.76	-0.2
2,501,861	+		TX73_011430	0.76	+0.0
2,501,861	+		TX73_011430	0.76	-0.2
2,501,923	+		TX73_011430	0.78	+0.2
2,501,929	-		TX73_011430	0.78	-0.6
2,501,964	-		TX73_011430	0.79	-0.2
2,501,998	+		TX73_011430	0.80	+0.6
2,502,001	-		TX73_011430	0.80	-1.0
2,502,006	-		TX73_011430	0.80	-0.3
2,502,043	+		TX73_011430	0.81	-0.4
2,502,048	+		TX73_011430	0.81	-1.2
2,502,056	-		TX73_011430	0.82	-1.0
2,502,088	-		TX73_011430	0.83	-0.6
2,502,145	-		TX73_011430	0.84	-0.6
2,502,171	-		TX73_011430	0.85	+0.5
2,502,179	+		TX73_011430	0.85	-0.0
2,502,187	-		TX73_011430	0.86	+3.9
2,502,187	-		TX73_011430	0.86	+0.9
2,502,187	-		TX73_011430	0.86	-1.2
2,502,187	-		TX73_011430	0.86	-0.4
2,502,187	-		TX73_011430	0.86	+0.5
2,502,202	+		TX73_011430	0.86	+1.2
2,502,223	+		TX73_011430	0.87	-0.8
2,502,231	-		TX73_011430	0.87	-0.8
2,502,263	+		TX73_011430	0.88	+0.6
2,502,290	+		TX73_011430	0.89	-0.6
2,502,298	-		TX73_011430	0.89	+0.1
2,502,313	+		TX73_011430	0.89	-0.7
2,502,314	-		TX73_011430	0.89	-0.6
2,502,324	-		TX73_011430	0.90	+0.5
2,502,384	-				-0.1
2,502,423	+				-0.4
2,502,431	-				-0.6
2,502,431	-				-1.5
2,502,442	-				+0.2
2,502,462	-				-1.5
2,502,466	+				-0.7
2,502,485	+				-0.4
2,502,492	+				+0.2
2,502,492	+				-0.1
2,502,585	-				-0.6
2,502,603	+				-0.1
2,502,666	-				+0.5
2,502,681	-				+0.2
2,502,681	-				+1.2
2,502,681	-				-0.1
2,502,686	-				+0.5
2,502,688	+				+0.2
2,502,688	+				+0.1
2,502,688	+				-0.0
2,502,696	-				+0.1
2,502,696	-				-1.0
2,502,696	-				+0.6
2,502,696	-				+0.7
2,502,696	-				+0.2
2,502,696	-				-0.7
2,502,696	-				-0.4
2,502,701	-				-0.2
2,502,742	-				+0.2
2,502,755	+				+0.6
2,502,767	+				+0.2
2,502,780	+				-1.4
2,502,780	+				-1.0
2,502,816	+				-1.0
2,502,832	+				-0.6
2,502,840	-				-0.7
2,502,840	-				-0.4
2,502,840	-				+0.0
2,502,887	+				-0.2
2,502,940	+				+0.5
2,502,943	-				-0.9
2,502,943	-				+0.5
2,502,943	-				+1.2
2,502,971	+		TX73_011435	0.11	-0.7
2,502,994	-		TX73_011435	0.12	-0.6
2,502,994	-		TX73_011435	0.12	-0.0
2,503,150	+		TX73_011435	0.18	-1.0
2,503,169	+		TX73_011435	0.18	-0.1
2,503,177	-		TX73_011435	0.19	+0.6
2,503,241	-		TX73_011435	0.21	+0.6
2,503,257	-		TX73_011435	0.22	-0.2
2,503,257	-		TX73_011435	0.22	+0.7
2,503,278	-		TX73_011435	0.23	-0.8
2,503,303	-		TX73_011435	0.23	+0.1
2,503,308	-		TX73_011435	0.24	-0.0
2,503,308	-		TX73_011435	0.24	-0.4
2,503,345	+		TX73_011435	0.25	+1.3
2,503,353	+		TX73_011435	0.25	+1.0
2,503,383	+		TX73_011435	0.26	-0.3
2,503,391	-		TX73_011435	0.27	-0.1
2,503,391	-		TX73_011435	0.27	+0.1
2,503,460	-		TX73_011435	0.29	-0.6
2,503,495	-		TX73_011435	0.31	-0.6
2,503,508	+		TX73_011435	0.31	+0.1
2,503,508	+		TX73_011435	0.31	-0.7
2,503,508	+		TX73_011435	0.31	-1.7
2,503,508	+		TX73_011435	0.31	-0.7
2,503,508	+		TX73_011435	0.31	-0.4
2,503,508	+		TX73_011435	0.31	+0.9
2,503,508	+		TX73_011435	0.31	+0.6
2,503,509	+		TX73_011435	0.31	-1.8
2,503,514	-		TX73_011435	0.31	-0.6
2,503,516	-		TX73_011435	0.31	-0.3
2,503,516	-		TX73_011435	0.31	-0.3
2,503,516	-		TX73_011435	0.31	+0.1
2,503,531	-		TX73_011435	0.32	-0.4
2,503,541	+		TX73_011435	0.32	-0.4
2,503,549	-		TX73_011435	0.33	+0.0
2,503,549	-		TX73_011435	0.33	-0.2
2,503,549	-		TX73_011435	0.33	-0.1
2,503,573	-		TX73_011435	0.34	+0.1
2,503,607	-		TX73_011435	0.35	-1.1
2,503,611	+		TX73_011435	0.35	-0.1
2,503,616	-		TX73_011435	0.35	+0.3
2,503,619	-		TX73_011435	0.35	-0.9
2,503,620	+		TX73_011435	0.35	+0.7
2,503,643	-		TX73_011435	0.36	-0.3
2,503,652	+		TX73_011435	0.37	+0.2
2,503,652	+		TX73_011435	0.37	-0.1
2,503,660	-		TX73_011435	0.37	-0.1
2,503,660	-		TX73_011435	0.37	-1.4
2,503,677	+		TX73_011435	0.38	-0.5
2,503,685	-		TX73_011435	0.38	+0.3
2,503,686	-		TX73_011435	0.38	-0.2
2,503,692	-		TX73_011435	0.38	+0.3
2,503,700	+		TX73_011435	0.38	-0.4
2,503,710	+		TX73_011435	0.39	-0.1
2,503,713	-		TX73_011435	0.39	-0.8
2,503,724	+		TX73_011435	0.39	-0.2
2,503,762	-		TX73_011435	0.41	-0.5
2,503,776	-		TX73_011435	0.41	-0.8
2,503,797	-		TX73_011435	0.42	-0.1
2,503,818	-		TX73_011435	0.43	+0.6
2,503,818	-		TX73_011435	0.43	-0.7
2,503,823	-		TX73_011435	0.43	-0.7
2,503,827	+		TX73_011435	0.43	+0.0
2,503,866	+		TX73_011435	0.45	+0.0
2,503,893	+		TX73_011435	0.46	+0.2
2,503,927	-		TX73_011435	0.47	-0.6
2,503,943	+		TX73_011435	0.47	-0.4
2,503,977	+		TX73_011435	0.49	+0.0
2,504,019	+		TX73_011435	0.50	-0.3
2,504,099	+		TX73_011435	0.53	-0.4
2,504,105	-		TX73_011435	0.54	+0.3
2,504,107	-		TX73_011435	0.54	+0.7
2,504,107	-		TX73_011435	0.54	-0.3
2,504,107	-		TX73_011435	0.54	-1.3
2,504,122	+		TX73_011435	0.54	-1.3
2,504,125	-		TX73_011435	0.54	+0.1
2,504,125	-		TX73_011435	0.54	-1.4
2,504,125	-		TX73_011435	0.54	-0.7
2,504,127	+		TX73_011435	0.54	-1.5
2,504,127	+		TX73_011435	0.54	-0.5
2,504,127	+		TX73_011435	0.54	+0.1
2,504,127	+		TX73_011435	0.54	-0.9
2,504,127	+		TX73_011435	0.54	-0.6
2,504,127	+		TX73_011435	0.54	-0.1
2,504,133	-		TX73_011435	0.55	+0.3
2,504,135	-		TX73_011435	0.55	+0.2
2,504,135	-		TX73_011435	0.55	-0.0
2,504,135	-		TX73_011435	0.55	-0.5
2,504,135	-		TX73_011435	0.55	-0.3
2,504,135	-		TX73_011435	0.55	-0.3
2,504,135	-		TX73_011435	0.55	-0.8
2,504,135	-		TX73_011435	0.55	-0.4
2,504,165	+		TX73_011435	0.56	-0.5
2,504,178	-		TX73_011435	0.56	+0.1
2,504,178	-		TX73_011435	0.56	+0.2
2,504,210	-		TX73_011435	0.58	-0.7
2,504,250	+		TX73_011435	0.59	-0.3
2,504,286	-		TX73_011435	0.60	-3.6
2,504,352	-		TX73_011435	0.63	-1.4
2,504,352	-		TX73_011435	0.63	+0.7
2,504,352	-		TX73_011435	0.63	-0.2
2,504,383	-		TX73_011435	0.64	+0.2
2,504,385	+		TX73_011435	0.64	-0.7
2,504,422	+		TX73_011435	0.65	+0.3
2,504,477	-		TX73_011435	0.68	-0.3
2,504,487	+		TX73_011435	0.68	-0.2
2,504,530	-		TX73_011435	0.70	-0.1
2,504,578	-		TX73_011435	0.71	-0.4
2,504,578	-		TX73_011435	0.71	-0.8
2,504,607	-		TX73_011435	0.72	-0.6
2,504,687	+		TX73_011435	0.75	+0.6
2,504,696	-		TX73_011435	0.76	+0.4
2,504,730	+		TX73_011435	0.77	+0.2
2,504,735	+		TX73_011435	0.77	-0.5
2,504,738	-		TX73_011435	0.77	-0.6
2,504,738	-		TX73_011435	0.77	-0.7
2,504,786	+		TX73_011435	0.79	-0.4
2,504,794	-		TX73_011435	0.79	-0.5
2,504,800	+		TX73_011435	0.80	+0.3
2,504,808	+		TX73_011435	0.80	+0.8
2,504,823	-		TX73_011435	0.81	-0.3
2,504,843	+		TX73_011435	0.81	-0.3
2,504,912	-		TX73_011435	0.84	+0.6
2,504,917	-		TX73_011435	0.84	-0.1
2,504,960	-		TX73_011435	0.86	-0.5
2,504,960	-		TX73_011435	0.86	-0.6
2,504,973	+		TX73_011435	0.86	-0.8
2,504,986	+		TX73_011435	0.87	-0.8
2,505,050	-		TX73_011435	0.89	-0.1
2,505,061	+		TX73_011435	0.89	-0.2
2,505,069	-		TX73_011435	0.90	-1.5
2,505,072	-		TX73_011435	0.90	+0.6
2,505,073	+		TX73_011435	0.90	+0.3
2,505,073	+		TX73_011435	0.90	-1.1
2,505,093	-				+0.0
2,505,115	+				-0.3
2,505,115	-				-0.5
2,505,123	-				-0.2
2,505,151	+				-0.1
2,505,158	-				-0.2
2,505,180	-				+0.2
2,505,186	-				+0.2
2,505,192	+				-0.4
2,505,224	+				-0.7
2,505,237	+				-0.2
2,505,248	-				-0.2
2,505,257	-				-0.7
2,505,299	-				-0.2
2,505,428	-		TX73_011440	0.49	-0.2
2,505,436	+		TX73_011440	0.54	-0.8
2,505,489	-				+0.4
2,505,489	-				-0.1
2,505,491	+				-0.1
2,505,491	+				-0.9
2,505,499	-				-0.0
2,505,499	-				+0.4
2,505,499	-				-0.9
2,505,502	+				-0.4
2,505,637	+				-1.1
2,505,646	-				-0.4
2,505,653	-				+1.1
2,505,658	+				-0.3
2,505,668	-				+1.3
2,505,678	+				+0.8
2,505,695	+				+1.0
2,505,703	-				-0.4
2,505,797	+		TX73_011445	0.19	+0.5
2,505,857	+		TX73_011445	0.26	-0.5
2,505,863	+		TX73_011445	0.27	-1.4
2,505,891	-		TX73_011445	0.30	+0.0
2,505,896	+		TX73_011445	0.30	-0.4
2,505,953	+		TX73_011445	0.37	-0.4
2,505,970	+		TX73_011445	0.39	+0.2
2,505,997	+		TX73_011445	0.42	+1.3
2,505,997	+		TX73_011445	0.42	+0.5
2,506,014	+		TX73_011445	0.44	-2.0
2,506,014	+		TX73_011445	0.44	+1.0
2,506,014	+		TX73_011445	0.44	-0.1
2,506,014	+		TX73_011445	0.44	-1.0
2,506,014	+		TX73_011445	0.44	-0.3
2,506,022	-		TX73_011445	0.45	+0.2
2,506,024	-		TX73_011445	0.45	-0.4
2,506,024	-		TX73_011445	0.45	-1.2
2,506,024	-		TX73_011445	0.45	+1.9
2,506,051	+		TX73_011445	0.48	+0.2
2,506,087	-		TX73_011445	0.52	+1.4
2,506,099	+		TX73_011445	0.53	+0.3
2,506,107	+		TX73_011445	0.54	-2.6
2,506,113	-		TX73_011445	0.55	-0.5
2,506,119	+		TX73_011445	0.56	-2.2
2,506,155	+		TX73_011445	0.60	-1.0
2,506,161	-		TX73_011445	0.60	-0.1
2,506,180	-		TX73_011445	0.62	-0.4
2,506,206	+		TX73_011445	0.65	-2.1
2,506,250	+		TX73_011445	0.70	-0.2
2,506,260	+		TX73_011445	0.72	-0.7
2,506,296	-		TX73_011445	0.76	-0.6
2,506,300	+		TX73_011445	0.76	-0.7
2,506,301	-		TX73_011445	0.76	-0.0
2,506,328	+		TX73_011445	0.79	+0.0
2,506,337	-		TX73_011445	0.80	-1.6