Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002755

Experiment: PM with succinate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002750 and TX73_002755 are separated by 182 nucleotidesTX73_002755 and TX73_002760 are separated by 76 nucleotidesTX73_002760 and TX73_002765 are separated by 19 nucleotides TX73_002750: TX73_002750 - acetyl-CoA C-acetyltransferase, at 590,895 to 592,073 _002750 TX73_002755: TX73_002755 - beta-ketoacyl-ACP reductase, at 592,256 to 592,981 _002755 TX73_002760: TX73_002760 - EamA family transporter, at 593,058 to 593,924 _002760 TX73_002765: TX73_002765 - TIGR02281 family clan AA aspartic protease, at 593,944 to 594,465 _002765 Position (kb) 592 593Strain fitness (log2 ratio) -2 -1 0 1 2at 591.259 kb on - strand, within TX73_002750at 591.319 kb on - strand, within TX73_002750at 591.323 kb on + strand, within TX73_002750at 591.323 kb on + strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.342 kb on - strand, within TX73_002750at 591.347 kb on + strand, within TX73_002750at 591.353 kb on - strand, within TX73_002750at 591.354 kb on + strand, within TX73_002750at 591.355 kb on - strand, within TX73_002750at 591.355 kb on - strand, within TX73_002750at 591.373 kb on - strand, within TX73_002750at 591.419 kb on + strand, within TX73_002750at 591.444 kb on - strand, within TX73_002750at 591.449 kb on + strand, within TX73_002750at 591.449 kb on + strand, within TX73_002750at 591.451 kb on - strand, within TX73_002750at 591.484 kb on - strand, within TX73_002750at 591.504 kb on + strand, within TX73_002750at 591.520 kb on - strand, within TX73_002750at 591.571 kb on + strand, within TX73_002750at 591.584 kb on + strand, within TX73_002750at 591.625 kb on + strand, within TX73_002750at 591.660 kb on + strand, within TX73_002750at 591.671 kb on - strand, within TX73_002750at 591.710 kb on + strand, within TX73_002750at 591.718 kb on - strand, within TX73_002750at 591.718 kb on - strand, within TX73_002750at 591.732 kb on - strand, within TX73_002750at 591.742 kb on - strand, within TX73_002750at 591.742 kb on - strand, within TX73_002750at 591.742 kb on - strand, within TX73_002750at 591.760 kb on + strand, within TX73_002750at 591.765 kb on + strand, within TX73_002750at 591.765 kb on + strand, within TX73_002750at 591.765 kb on + strand, within TX73_002750at 591.789 kb on + strand, within TX73_002750at 591.794 kb on + strand, within TX73_002750at 591.794 kb on + strand, within TX73_002750at 591.797 kb on - strand, within TX73_002750at 591.802 kb on - strand, within TX73_002750at 591.802 kb on - strand, within TX73_002750at 591.820 kb on + strand, within TX73_002750at 591.820 kb on + strand, within TX73_002750at 591.825 kb on + strand, within TX73_002750at 591.828 kb on - strand, within TX73_002750at 591.828 kb on - strand, within TX73_002750at 591.848 kb on - strand, within TX73_002750at 591.855 kb on + strand, within TX73_002750at 591.860 kb on + strand, within TX73_002750at 591.863 kb on - strand, within TX73_002750at 591.863 kb on - strand, within TX73_002750at 591.863 kb on - strand, within TX73_002750at 591.868 kb on - strand, within TX73_002750at 591.868 kb on - strand, within TX73_002750at 591.868 kb on - strand, within TX73_002750at 591.895 kb on + strand, within TX73_002750at 591.903 kb on - strand, within TX73_002750at 591.944 kb on - strand, within TX73_002750at 591.946 kb on - strand, within TX73_002750at 591.957 kb on - strandat 591.964 kb on + strandat 591.967 kb on + strandat 591.980 kb on + strandat 591.987 kb on + strandat 591.987 kb on + strandat 591.987 kb on + strandat 592.027 kb on + strandat 592.038 kb on + strandat 592.046 kb on - strandat 592.046 kb on - strandat 592.053 kb on - strandat 592.053 kb on - strandat 592.058 kb on - strandat 592.075 kb on - strandat 592.079 kb on + strandat 592.092 kb on + strandat 592.111 kb on + strandat 592.178 kb on + strandat 592.246 kb on + strandat 592.316 kb on + strandat 592.326 kb on - strandat 592.358 kb on + strand, within TX73_002755at 592.363 kb on + strand, within TX73_002755at 592.474 kb on - strand, within TX73_002755at 592.549 kb on + strand, within TX73_002755at 592.559 kb on - strand, within TX73_002755at 592.590 kb on + strand, within TX73_002755at 592.664 kb on + strand, within TX73_002755at 592.681 kb on - strand, within TX73_002755at 592.767 kb on + strand, within TX73_002755at 592.795 kb on - strand, within TX73_002755at 592.807 kb on + strand, within TX73_002755at 592.813 kb on + strand, within TX73_002755at 592.815 kb on - strand, within TX73_002755at 592.834 kb on + strand, within TX73_002755at 592.878 kb on + strand, within TX73_002755at 592.888 kb on - strand, within TX73_002755at 592.888 kb on - strand, within TX73_002755at 592.904 kb on + strand, within TX73_002755at 592.914 kb on - strandat 592.940 kb on + strandat 592.941 kb on - strandat 592.949 kb on - strandat 592.949 kb on - strandat 592.949 kb on - strandat 592.949 kb on - strandat 592.976 kb on + strandat 593.029 kb on + strandat 593.050 kb on - strandat 593.055 kb on + strandat 593.063 kb on - strandat 593.069 kb on - strandat 593.084 kb on - strandat 593.105 kb on - strandat 593.120 kb on + strandat 593.138 kb on - strandat 593.140 kb on + strandat 593.172 kb on + strand, within TX73_002760at 593.174 kb on - strand, within TX73_002760at 593.212 kb on - strand, within TX73_002760at 593.227 kb on - strand, within TX73_002760at 593.231 kb on - strand, within TX73_002760at 593.240 kb on + strand, within TX73_002760at 593.240 kb on + strand, within TX73_002760at 593.246 kb on - strand, within TX73_002760at 593.250 kb on + strand, within TX73_002760at 593.255 kb on + strand, within TX73_002760at 593.255 kb on + strand, within TX73_002760at 593.258 kb on - strand, within TX73_002760at 593.287 kb on + strand, within TX73_002760at 593.311 kb on + strand, within TX73_002760at 593.338 kb on - strand, within TX73_002760at 593.390 kb on + strand, within TX73_002760at 593.433 kb on + strand, within TX73_002760at 593.449 kb on + strand, within TX73_002760at 593.452 kb on + strand, within TX73_002760at 593.454 kb on + strand, within TX73_002760at 593.460 kb on - strand, within TX73_002760at 593.460 kb on - strand, within TX73_002760at 593.460 kb on - strand, within TX73_002760at 593.462 kb on - strand, within TX73_002760at 593.467 kb on - strand, within TX73_002760at 593.467 kb on - strand, within TX73_002760at 593.479 kb on - strand, within TX73_002760at 593.479 kb on - strand, within TX73_002760at 593.513 kb on - strand, within TX73_002760at 593.529 kb on + strand, within TX73_002760at 593.537 kb on - strand, within TX73_002760at 593.567 kb on + strand, within TX73_002760at 593.572 kb on + strand, within TX73_002760at 593.572 kb on + strand, within TX73_002760at 593.572 kb on + strand, within TX73_002760at 593.572 kb on + strand, within TX73_002760at 593.572 kb on + strand, within TX73_002760at 593.575 kb on - strand, within TX73_002760at 593.577 kb on + strand, within TX73_002760at 593.585 kb on - strand, within TX73_002760at 593.598 kb on + strand, within TX73_002760at 593.600 kb on + strand, within TX73_002760at 593.635 kb on + strand, within TX73_002760at 593.678 kb on + strand, within TX73_002760at 593.712 kb on - strand, within TX73_002760at 593.727 kb on + strand, within TX73_002760at 593.751 kb on - strand, within TX73_002760at 593.753 kb on - strand, within TX73_002760at 593.753 kb on - strand, within TX73_002760at 593.801 kb on + strand, within TX73_002760at 593.809 kb on - strand, within TX73_002760at 593.848 kb on - strandat 593.870 kb on + strandat 593.896 kb on + strandat 593.896 kb on + strandat 593.896 kb on + strandat 593.898 kb on + strandat 593.903 kb on + strandat 593.904 kb on - strandat 593.911 kb on - strandat 593.917 kb on - strandat 593.941 kb on + strandat 593.941 kb on + strandat 593.957 kb on - strandat 593.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark
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591,259 - TX73_002750 0.31 +0.7
591,319 - TX73_002750 0.36 +1.6
591,323 + TX73_002750 0.36 +0.3
591,323 + TX73_002750 0.36 -0.4
591,331 - TX73_002750 0.37 +0.2
591,331 - TX73_002750 0.37 -0.5
591,331 - TX73_002750 0.37 +0.1
591,342 - TX73_002750 0.38 +0.6
591,347 + TX73_002750 0.38 +0.3
591,353 - TX73_002750 0.39 -0.1
591,354 + TX73_002750 0.39 -0.1
591,355 - TX73_002750 0.39 -1.7
591,355 - TX73_002750 0.39 -0.1
591,373 - TX73_002750 0.41 +0.7
591,419 + TX73_002750 0.44 +0.2
591,444 - TX73_002750 0.47 +0.4
591,449 + TX73_002750 0.47 -0.6
591,449 + TX73_002750 0.47 +0.1
591,451 - TX73_002750 0.47 -0.2
591,484 - TX73_002750 0.50 -0.6
591,504 + TX73_002750 0.52 -0.1
591,520 - TX73_002750 0.53 +0.2
591,571 + TX73_002750 0.57 +0.9
591,584 + TX73_002750 0.58 -0.2
591,625 + TX73_002750 0.62 -0.1
591,660 + TX73_002750 0.65 +0.1
591,671 - TX73_002750 0.66 +0.0
591,710 + TX73_002750 0.69 -0.8
591,718 - TX73_002750 0.70 -0.0
591,718 - TX73_002750 0.70 +0.5
591,732 - TX73_002750 0.71 -0.2
591,742 - TX73_002750 0.72 +0.0
591,742 - TX73_002750 0.72 -0.0
591,742 - TX73_002750 0.72 -0.8
591,760 + TX73_002750 0.73 -1.0
591,765 + TX73_002750 0.74 -0.6
591,765 + TX73_002750 0.74 -0.1
591,765 + TX73_002750 0.74 -0.2
591,789 + TX73_002750 0.76 +0.1
591,794 + TX73_002750 0.76 -0.5
591,794 + TX73_002750 0.76 -1.2
591,797 - TX73_002750 0.77 +0.6
591,802 - TX73_002750 0.77 +0.0
591,802 - TX73_002750 0.77 -2.1
591,820 + TX73_002750 0.78 -0.9
591,820 + TX73_002750 0.78 -0.8
591,825 + TX73_002750 0.79 +0.1
591,828 - TX73_002750 0.79 +0.5
591,828 - TX73_002750 0.79 +0.4
591,848 - TX73_002750 0.81 +0.8
591,855 + TX73_002750 0.81 -0.1
591,860 + TX73_002750 0.82 +0.5
591,863 - TX73_002750 0.82 +0.4
591,863 - TX73_002750 0.82 -0.4
591,863 - TX73_002750 0.82 -0.2
591,868 - TX73_002750 0.83 -0.9
591,868 - TX73_002750 0.83 +0.4
591,868 - TX73_002750 0.83 -0.3
591,895 + TX73_002750 0.85 +0.5
591,903 - TX73_002750 0.85 -0.4
591,944 - TX73_002750 0.89 -0.8
591,946 - TX73_002750 0.89 -0.6
591,957 - -0.4
591,964 + -0.4
591,967 + -0.5
591,980 + -0.7
591,987 + +0.2
591,987 + -0.8
591,987 + -0.1
592,027 + +0.6
592,038 + +0.4
592,046 - +0.3
592,046 - -0.6
592,053 - -0.3
592,053 - -0.0
592,058 - +0.1
592,075 - -0.3
592,079 + +0.5
592,092 + +1.1
592,111 + -1.0
592,178 + -1.0
592,246 + -1.2
592,316 + -0.8
592,326 - -0.7
592,358 + TX73_002755 0.14 +1.6
592,363 + TX73_002755 0.15 +1.3
592,474 - TX73_002755 0.30 -0.4
592,549 + TX73_002755 0.40 +0.1
592,559 - TX73_002755 0.42 +0.6
592,590 + TX73_002755 0.46 +1.6
592,664 + TX73_002755 0.56 +0.8
592,681 - TX73_002755 0.59 +0.6
592,767 + TX73_002755 0.70 +0.8
592,795 - TX73_002755 0.74 +0.3
592,807 + TX73_002755 0.76 +0.1
592,813 + TX73_002755 0.77 +1.2
592,815 - TX73_002755 0.77 -0.8
592,834 + TX73_002755 0.80 +1.1
592,878 + TX73_002755 0.86 -1.0
592,888 - TX73_002755 0.87 -0.7
592,888 - TX73_002755 0.87 -0.6
592,904 + TX73_002755 0.89 +0.1
592,914 - +0.9
592,940 + +1.3
592,941 - -0.6
592,949 - +1.4
592,949 - +1.9
592,949 - -0.2
592,949 - -1.1
592,976 + +0.2
593,029 + +0.3
593,050 - -0.1
593,055 + -0.0
593,063 - -0.1
593,069 - -0.5
593,084 - -0.4
593,105 - +0.1
593,120 + +0.3
593,138 - -0.8
593,140 + +0.2
593,172 + TX73_002760 0.13 +0.1
593,174 - TX73_002760 0.13 -0.5
593,212 - TX73_002760 0.18 -0.4
593,227 - TX73_002760 0.19 +0.0
593,231 - TX73_002760 0.20 +0.8
593,240 + TX73_002760 0.21 +0.1
593,240 + TX73_002760 0.21 +1.2
593,246 - TX73_002760 0.22 -0.0
593,250 + TX73_002760 0.22 +0.3
593,255 + TX73_002760 0.23 +0.4
593,255 + TX73_002760 0.23 -1.0
593,258 - TX73_002760 0.23 -0.6
593,287 + TX73_002760 0.26 -0.8
593,311 + TX73_002760 0.29 -0.1
593,338 - TX73_002760 0.32 -0.0
593,390 + TX73_002760 0.38 +1.0
593,433 + TX73_002760 0.43 -0.4
593,449 + TX73_002760 0.45 -0.2
593,452 + TX73_002760 0.45 +0.0
593,454 + TX73_002760 0.46 +1.3
593,460 - TX73_002760 0.46 -0.6
593,460 - TX73_002760 0.46 +1.4
593,460 - TX73_002760 0.46 -1.4
593,462 - TX73_002760 0.47 -0.2
593,467 - TX73_002760 0.47 -0.2
593,467 - TX73_002760 0.47 -0.3
593,479 - TX73_002760 0.49 -0.0
593,479 - TX73_002760 0.49 -0.1
593,513 - TX73_002760 0.52 +0.1
593,529 + TX73_002760 0.54 -0.3
593,537 - TX73_002760 0.55 -0.8
593,567 + TX73_002760 0.59 +0.7
593,572 + TX73_002760 0.59 -0.2
593,572 + TX73_002760 0.59 -0.4
593,572 + TX73_002760 0.59 +0.2
593,572 + TX73_002760 0.59 -2.1
593,572 + TX73_002760 0.59 +0.0
593,575 - TX73_002760 0.60 -1.4
593,577 + TX73_002760 0.60 -0.1
593,585 - TX73_002760 0.61 +0.0
593,598 + TX73_002760 0.62 +0.7
593,600 + TX73_002760 0.63 +1.0
593,635 + TX73_002760 0.67 +0.8
593,678 + TX73_002760 0.72 -0.4
593,712 - TX73_002760 0.75 -0.5
593,727 + TX73_002760 0.77 +0.1
593,751 - TX73_002760 0.80 -0.9
593,753 - TX73_002760 0.80 -0.6
593,753 - TX73_002760 0.80 +0.2
593,801 + TX73_002760 0.86 +0.9
593,809 - TX73_002760 0.87 +0.1
593,848 - +0.1
593,870 + +0.4
593,896 + -0.2
593,896 + +0.2
593,896 + -0.7
593,898 + -0.6
593,903 + +0.5
593,904 - +0.7
593,911 - +0.1
593,917 - +0.1
593,941 + -1.0
593,941 + -0.4
593,957 - -0.0
593,981 - -0.5

Or see this region's nucleotide sequence