Experiment: PM with succinate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000270 and TX73_000275 are separated by 602 nucleotides TX73_000275 and TX73_000280 are separated by 50 nucleotides TX73_000280 and TX73_000285 are separated by 153 nucleotides
TX73_000270: TX73_000270 - PTS IIA-like nitrogen regulatory protein PtsN, at 58,627 to 59,088
_000270
TX73_000275: TX73_000275 - DUF1150 domain-containing protein, at 59,691 to 59,957
_000275
TX73_000280: TX73_000280 - Hsp20 family protein, at 60,008 to 60,433
_000280
TX73_000285: TX73_000285 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 60,587 to 61,678
_000285
Position (kb) 59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.693 kb on - strand, within TX73_000270 at 58.721 kb on + strand, within TX73_000270 at 58.729 kb on - strand, within TX73_000270 at 58.736 kb on + strand, within TX73_000270 at 58.743 kb on - strand, within TX73_000270 at 58.754 kb on + strand, within TX73_000270 at 58.762 kb on + strand, within TX73_000270 at 58.802 kb on + strand, within TX73_000270 at 58.802 kb on + strand, within TX73_000270 at 58.802 kb on + strand, within TX73_000270 at 58.802 kb on + strand, within TX73_000270 at 58.802 kb on + strand, within TX73_000270 at 58.810 kb on - strand, within TX73_000270 at 58.810 kb on - strand, within TX73_000270 at 58.841 kb on - strand, within TX73_000270 at 58.856 kb on + strand, within TX73_000270 at 58.868 kb on - strand, within TX73_000270 at 58.961 kb on + strand, within TX73_000270 at 58.962 kb on + strand, within TX73_000270 at 58.962 kb on + strand, within TX73_000270 at 58.962 kb on + strand, within TX73_000270 at 58.962 kb on + strand, within TX73_000270 at 58.962 kb on + strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 58.970 kb on - strand, within TX73_000270 at 59.008 kb on - strand, within TX73_000270 at 59.064 kb on - strand at 59.067 kb on + strand at 59.091 kb on + strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.091 kb on - strand at 59.103 kb on + strand at 59.111 kb on - strand at 59.113 kb on + strand at 59.136 kb on - strand at 59.156 kb on + strand at 59.157 kb on + strand at 59.185 kb on - strand at 59.203 kb on + strand at 59.211 kb on - strand at 59.225 kb on + strand at 59.234 kb on + strand at 59.237 kb on + strand at 59.239 kb on + strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.269 kb on + strand at 59.269 kb on + strand at 59.277 kb on - strand at 59.285 kb on - strand at 59.285 kb on - strand at 59.307 kb on + strand at 59.327 kb on + strand at 59.344 kb on - strand at 59.375 kb on + strand at 59.377 kb on + strand at 59.378 kb on - strand at 59.401 kb on + strand at 59.423 kb on - strand at 59.429 kb on + strand at 59.429 kb on + strand at 59.429 kb on + strand at 59.434 kb on + strand at 59.435 kb on + strand at 59.435 kb on + strand at 59.437 kb on - strand at 59.443 kb on - strand at 59.465 kb on + strand at 59.506 kb on + strand at 59.514 kb on - strand at 59.515 kb on - strand at 59.537 kb on - strand at 59.541 kb on + strand at 59.633 kb on - strand at 59.695 kb on - strand at 59.720 kb on + strand, within TX73_000275 at 59.721 kb on + strand, within TX73_000275 at 59.721 kb on + strand, within TX73_000275 at 59.722 kb on - strand, within TX73_000275 at 59.782 kb on + strand, within TX73_000275 at 59.790 kb on - strand, within TX73_000275 at 59.790 kb on - strand, within TX73_000275 at 59.790 kb on - strand, within TX73_000275 at 59.809 kb on - strand, within TX73_000275 at 59.809 kb on - strand, within TX73_000275 at 59.857 kb on + strand, within TX73_000275 at 59.875 kb on - strand, within TX73_000275 at 59.885 kb on - strand, within TX73_000275 at 59.888 kb on - strand, within TX73_000275 at 59.892 kb on + strand, within TX73_000275 at 59.912 kb on + strand, within TX73_000275 at 59.917 kb on - strand, within TX73_000275 at 59.937 kb on + strand at 59.941 kb on + strand at 59.944 kb on - strand at 59.966 kb on - strand at 59.967 kb on - strand at 59.968 kb on + strand at 59.969 kb on + strand at 60.094 kb on + strand, within TX73_000280 at 60.102 kb on + strand, within TX73_000280 at 60.125 kb on - strand, within TX73_000280 at 60.204 kb on + strand, within TX73_000280 at 60.266 kb on - strand, within TX73_000280 at 60.271 kb on + strand, within TX73_000280 at 60.272 kb on - strand, within TX73_000280 at 60.294 kb on - strand, within TX73_000280 at 60.295 kb on - strand, within TX73_000280 at 60.329 kb on + strand, within TX73_000280 at 60.350 kb on + strand, within TX73_000280 at 60.350 kb on + strand, within TX73_000280 at 60.358 kb on + strand, within TX73_000280 at 60.373 kb on - strand, within TX73_000280 at 60.373 kb on - strand, within TX73_000280 at 60.375 kb on + strand, within TX73_000280 at 60.375 kb on + strand, within TX73_000280 at 60.383 kb on - strand, within TX73_000280 at 60.385 kb on + strand, within TX73_000280 at 60.405 kb on + strand at 60.408 kb on + strand at 60.424 kb on + strand at 60.455 kb on + strand at 60.462 kb on - strand at 60.462 kb on - strand at 60.462 kb on - strand at 60.478 kb on + strand at 60.483 kb on + strand at 60.488 kb on + strand at 60.496 kb on - strand at 60.503 kb on + strand at 60.503 kb on + strand at 60.508 kb on + strand at 60.508 kb on + strand at 60.511 kb on - strand at 60.516 kb on - strand at 60.517 kb on + strand at 60.517 kb on + strand at 60.517 kb on + strand at 60.517 kb on + strand at 60.517 kb on + strand at 60.525 kb on - strand at 60.525 kb on - strand at 60.525 kb on - strand at 60.525 kb on - strand at 60.540 kb on + strand at 60.540 kb on + strand at 60.615 kb on + strand at 60.625 kb on + strand at 60.627 kb on + strand at 60.651 kb on + strand at 60.651 kb on + strand at 60.659 kb on + strand at 60.659 kb on - strand at 60.659 kb on - strand at 60.681 kb on + strand at 60.689 kb on - strand at 60.704 kb on + strand, within TX73_000285 at 60.719 kb on - strand, within TX73_000285 at 60.782 kb on - strand, within TX73_000285 at 60.782 kb on - strand, within TX73_000285 at 60.819 kb on - strand, within TX73_000285 at 60.829 kb on - strand, within TX73_000285 at 60.839 kb on + strand, within TX73_000285 at 60.847 kb on - strand, within TX73_000285 at 60.847 kb on - strand, within TX73_000285 at 60.847 kb on - strand, within TX73_000285 at 60.853 kb on + strand, within TX73_000285 at 60.853 kb on + strand, within TX73_000285 at 60.874 kb on + strand, within TX73_000285 at 60.915 kb on + strand, within TX73_000285 at 60.915 kb on + strand, within TX73_000285 at 60.917 kb on + strand, within TX73_000285 at 60.923 kb on - strand, within TX73_000285 at 60.928 kb on - strand, within TX73_000285 at 60.942 kb on - strand, within TX73_000285 at 60.947 kb on + strand, within TX73_000285
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark remove 58,693 - TX73_000270 0.14 -0.9 58,721 + TX73_000270 0.20 +0.1 58,729 - TX73_000270 0.22 +1.9 58,736 + TX73_000270 0.24 -1.0 58,743 - TX73_000270 0.25 -1.4 58,754 + TX73_000270 0.27 -1.7 58,762 + TX73_000270 0.29 -0.1 58,802 + TX73_000270 0.38 -1.5 58,802 + TX73_000270 0.38 +1.2 58,802 + TX73_000270 0.38 -2.2 58,802 + TX73_000270 0.38 -0.5 58,802 + TX73_000270 0.38 -0.6 58,810 - TX73_000270 0.40 -1.5 58,810 - TX73_000270 0.40 +2.2 58,841 - TX73_000270 0.46 -1.1 58,856 + TX73_000270 0.50 -2.0 58,868 - TX73_000270 0.52 -0.7 58,961 + TX73_000270 0.72 +0.4 58,962 + TX73_000270 0.73 -1.2 58,962 + TX73_000270 0.73 -0.6 58,962 + TX73_000270 0.73 -1.1 58,962 + TX73_000270 0.73 +0.5 58,962 + TX73_000270 0.73 -1.4 58,970 - TX73_000270 0.74 -0.2 58,970 - TX73_000270 0.74 -0.4 58,970 - TX73_000270 0.74 -1.5 58,970 - TX73_000270 0.74 -1.3 58,970 - TX73_000270 0.74 -2.0 58,970 - TX73_000270 0.74 -1.2 59,008 - TX73_000270 0.82 -1.5 59,064 - +0.1 59,067 + +0.7 59,091 + +0.0 59,091 - -0.5 59,091 - -0.0 59,091 - -0.3 59,091 - +0.6 59,091 - +0.5 59,091 - -0.7 59,091 - +0.2 59,103 + -0.1 59,111 - +0.5 59,113 + +1.3 59,136 - +0.4 59,156 + +0.9 59,157 + -1.5 59,185 - +0.6 59,203 + +0.4 59,211 - +0.1 59,225 + +0.7 59,234 + +0.5 59,237 + -0.2 59,239 + +0.1 59,252 - +0.9 59,252 - -0.5 59,269 + +0.4 59,269 + +0.1 59,277 - -0.6 59,285 - -1.5 59,285 - +0.5 59,307 + -0.4 59,327 + -0.9 59,344 - +0.5 59,375 + +0.3 59,377 + -0.1 59,378 - +0.9 59,401 + -0.7 59,423 - +0.8 59,429 + -1.3 59,429 + -0.0 59,429 + +0.1 59,434 + -0.1 59,435 + +0.7 59,435 + +1.5 59,437 - +0.2 59,443 - -0.5 59,465 + -0.7 59,506 + -0.7 59,514 - +0.3 59,515 - +0.6 59,537 - +0.4 59,541 + +0.3 59,633 - -0.7 59,695 - +0.6 59,720 + TX73_000275 0.11 +0.9 59,721 + TX73_000275 0.11 +0.9 59,721 + TX73_000275 0.11 +1.4 59,722 - TX73_000275 0.12 -0.9 59,782 + TX73_000275 0.34 -1.3 59,790 - TX73_000275 0.37 +0.8 59,790 - TX73_000275 0.37 +0.4 59,790 - TX73_000275 0.37 +0.2 59,809 - TX73_000275 0.44 +0.2 59,809 - TX73_000275 0.44 +0.5 59,857 + TX73_000275 0.62 -0.2 59,875 - TX73_000275 0.69 -0.6 59,885 - TX73_000275 0.73 +0.1 59,888 - TX73_000275 0.74 -0.1 59,892 + TX73_000275 0.75 +0.8 59,912 + TX73_000275 0.83 +0.0 59,917 - TX73_000275 0.85 +0.7 59,937 + -0.4 59,941 + -0.9 59,944 - -0.6 59,966 - +0.4 59,967 - +0.7 59,968 + +1.4 59,969 + +0.5 60,094 + TX73_000280 0.20 -0.2 60,102 + TX73_000280 0.22 +1.4 60,125 - TX73_000280 0.27 -0.0 60,204 + TX73_000280 0.46 +1.1 60,266 - TX73_000280 0.61 +0.2 60,271 + TX73_000280 0.62 -0.1 60,272 - TX73_000280 0.62 +0.8 60,294 - TX73_000280 0.67 +0.2 60,295 - TX73_000280 0.67 +0.5 60,329 + TX73_000280 0.75 +1.5 60,350 + TX73_000280 0.80 -0.2 60,350 + TX73_000280 0.80 +0.5 60,358 + TX73_000280 0.82 +0.2 60,373 - TX73_000280 0.86 +0.9 60,373 - TX73_000280 0.86 +0.4 60,375 + TX73_000280 0.86 +0.1 60,375 + TX73_000280 0.86 +0.6 60,383 - TX73_000280 0.88 +1.5 60,385 + TX73_000280 0.88 -0.3 60,405 + -0.3 60,408 + +0.8 60,424 + +0.7 60,455 + +0.3 60,462 - +0.6 60,462 - -0.6 60,462 - -1.3 60,478 + +0.0 60,483 + +1.7 60,488 + -0.8 60,496 - +0.1 60,503 + -0.1 60,503 + +0.4 60,508 + +1.0 60,508 + +1.3 60,511 - -0.1 60,516 - -0.2 60,517 + -1.0 60,517 + +0.1 60,517 + +0.2 60,517 + -0.0 60,517 + +1.5 60,525 - +0.2 60,525 - +0.6 60,525 - +0.1 60,525 - -0.2 60,540 + +0.3 60,540 + +2.2 60,615 + +0.6 60,625 + -0.2 60,627 + -0.3 60,651 + +0.3 60,651 + +0.6 60,659 + -0.2 60,659 - +0.4 60,659 - -0.2 60,681 + +0.2 60,689 - +0.1 60,704 + TX73_000285 0.11 -0.4 60,719 - TX73_000285 0.12 -0.9 60,782 - TX73_000285 0.18 +0.3 60,782 - TX73_000285 0.18 +1.9 60,819 - TX73_000285 0.21 -1.8 60,829 - TX73_000285 0.22 +0.2 60,839 + TX73_000285 0.23 -1.9 60,847 - TX73_000285 0.24 +0.0 60,847 - TX73_000285 0.24 +0.0 60,847 - TX73_000285 0.24 +0.0 60,853 + TX73_000285 0.24 +0.7 60,853 + TX73_000285 0.24 -0.1 60,874 + TX73_000285 0.26 +0.2 60,915 + TX73_000285 0.30 +0.1 60,915 + TX73_000285 0.30 +0.2 60,917 + TX73_000285 0.30 +1.0 60,923 - TX73_000285 0.31 +0.1 60,928 - TX73_000285 0.31 +0.1 60,942 - TX73_000285 0.33 -0.1 60,947 + TX73_000285 0.33 +0.8
Or see this region's nucleotide sequence