Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016355

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,568,732	+		TX73_016345	0.36	-0.1
3,568,781	+		TX73_016345	0.42	-1.2
3,568,794	+		TX73_016345	0.44	+1.5
3,568,794	+		TX73_016345	0.44	-0.2
3,568,794	+		TX73_016345	0.44	-0.8
3,568,832	+		TX73_016345	0.48	-1.0
3,568,868	-		TX73_016345	0.53	+0.3
3,568,874	+		TX73_016345	0.53	-0.3
3,568,933	+		TX73_016345	0.60	+0.5
3,568,933	+		TX73_016345	0.60	+0.9
3,568,977	+		TX73_016345	0.66	+0.3
3,568,981	+		TX73_016345	0.66	+0.5
3,568,981	+		TX73_016345	0.66	-0.6
3,568,981	+		TX73_016345	0.66	-0.2
3,568,983	+		TX73_016345	0.66	-0.3
3,568,989	-		TX73_016345	0.67	-2.1
3,568,989	-		TX73_016345	0.67	+0.6
3,569,008	-		TX73_016345	0.69	+0.3
3,569,024	+		TX73_016345	0.71	-0.6
3,569,032	-		TX73_016345	0.72	+0.2
3,569,032	-		TX73_016345	0.72	-1.6
3,569,039	-		TX73_016345	0.73	-0.6
3,569,039	-		TX73_016345	0.73	-1.0
3,569,057	+		TX73_016345	0.75	-0.5
3,569,085	+		TX73_016345	0.79	-0.2
3,569,110	+		TX73_016345	0.82	-0.1
3,569,112	-		TX73_016345	0.82	+0.7
3,569,139	-		TX73_016345	0.85	-0.0
3,569,166	+		TX73_016345	0.88	-1.8
3,569,173	+		TX73_016345	0.89	-1.0
3,569,187	+				-0.4
3,569,217	+				-0.8
3,569,218	-				+0.3
3,569,224	+				+2.3
3,569,230	+				-0.1
3,569,240	-				-0.7
3,569,257	-				-0.1
3,569,259	+				+0.7
3,569,295	+				+0.3
3,569,305	+				-0.4
3,569,313	-				-0.2
3,569,392	+		TX73_016350	0.21	+1.1
3,569,400	-		TX73_016350	0.23	-0.3
3,569,400	-		TX73_016350	0.23	-0.3
3,569,422	-		TX73_016350	0.29	-1.3
3,569,425	-		TX73_016350	0.30	+0.6
3,569,441	-		TX73_016350	0.35	-0.6
3,569,441	-		TX73_016350	0.35	+0.3
3,569,446	-		TX73_016350	0.36	+0.7
3,569,446	-		TX73_016350	0.36	+0.2
3,569,448	+		TX73_016350	0.37	-0.0
3,569,452	+		TX73_016350	0.38	+0.2
3,569,453	+		TX73_016350	0.38	+0.9
3,569,453	+		TX73_016350	0.38	-0.4
3,569,453	+		TX73_016350	0.38	+0.4
3,569,461	-		TX73_016350	0.40	-0.0
3,569,463	+		TX73_016350	0.41	+0.6
3,569,480	+		TX73_016350	0.46	+0.7
3,569,480	+		TX73_016350	0.46	+0.1
3,569,488	-		TX73_016350	0.48	+0.0
3,569,488	-		TX73_016350	0.48	+0.5
3,569,488	-		TX73_016350	0.48	-0.4
3,569,516	+		TX73_016350	0.56	-0.2
3,569,521	+		TX73_016350	0.57	+0.1
3,569,524	-		TX73_016350	0.58	+0.9
3,569,524	-		TX73_016350	0.58	+0.3
3,569,524	-		TX73_016350	0.58	-0.1
3,569,529	-		TX73_016350	0.59	-0.5
3,569,531	+		TX73_016350	0.60	-0.2
3,569,553	+		TX73_016350	0.66	+1.1
3,569,553	+		TX73_016350	0.66	+1.4
3,569,561	-		TX73_016350	0.68	+0.2
3,569,561	-		TX73_016350	0.68	-1.0
3,569,561	-		TX73_016350	0.68	+0.1
3,569,561	-		TX73_016350	0.68	+0.6
3,569,567	+		TX73_016350	0.70	-0.7
3,569,573	-		TX73_016350	0.72	-0.4
3,569,586	+		TX73_016350	0.75	+1.7
3,569,586	+		TX73_016350	0.75	+0.5
3,569,586	+		TX73_016350	0.75	+1.1
3,569,586	+		TX73_016350	0.75	-0.8
3,569,594	-		TX73_016350	0.78	+0.2
3,569,594	-		TX73_016350	0.78	+0.7
3,569,594	-		TX73_016350	0.78	+0.2
3,569,594	-		TX73_016350	0.78	-0.9
3,569,594	-		TX73_016350	0.78	+0.3
3,569,594	-		TX73_016350	0.78	-0.4
3,569,594	-		TX73_016350	0.78	-1.0
3,569,599	-		TX73_016350	0.79	-1.9
3,569,614	+		TX73_016350	0.83	+0.4
3,569,614	+		TX73_016350	0.83	+0.4
3,569,639	-				+0.5
3,569,651	+				-0.2
3,569,755	-				+0.3
3,569,757	+				-0.6
3,569,765	-				-0.4
3,569,780	-				+0.1
3,569,790	-				+0.2
3,569,792	+				+0.2
3,569,800	-				+0.4
3,569,838	-				+0.1
3,569,880	+		TX73_016355	0.11	+1.8
3,569,896	-		TX73_016355	0.12	-0.0
3,569,900	+		TX73_016355	0.12	-0.7
3,569,927	-		TX73_016355	0.14	+0.1
3,569,933	+		TX73_016355	0.14	+0.2
3,569,941	-		TX73_016355	0.15	+0.5
3,569,943	+		TX73_016355	0.15	-0.3
3,569,943	+		TX73_016355	0.15	-0.1
3,569,967	-		TX73_016355	0.17	-0.3
3,569,997	+		TX73_016355	0.19	-0.4
3,570,029	+		TX73_016355	0.21	-0.8
3,570,037	-		TX73_016355	0.22	+0.7
3,570,076	+		TX73_016355	0.25	+0.6
3,570,076	+		TX73_016355	0.25	+0.6
3,570,081	+		TX73_016355	0.25	+0.6
3,570,081	+		TX73_016355	0.25	+0.3
3,570,084	-		TX73_016355	0.25	-1.1
3,570,084	-		TX73_016355	0.25	+0.3
3,570,084	-		TX73_016355	0.25	+0.3
3,570,084	-		TX73_016355	0.25	-0.5
3,570,088	+		TX73_016355	0.25	+0.3
3,570,089	-		TX73_016355	0.25	+0.4
3,570,139	+		TX73_016355	0.29	-1.7
3,570,160	+		TX73_016355	0.30	-1.1
3,570,160	+		TX73_016355	0.30	+0.2
3,570,160	+		TX73_016355	0.30	+0.1
3,570,168	-		TX73_016355	0.31	-0.5
3,570,168	-		TX73_016355	0.31	+0.0
3,570,171	+		TX73_016355	0.31	+1.3
3,570,171	+		TX73_016355	0.31	+0.5
3,570,194	+		TX73_016355	0.33	+0.2
3,570,205	+		TX73_016355	0.34	+0.4
3,570,205	+		TX73_016355	0.34	-1.0
3,570,228	-		TX73_016355	0.35	+0.5
3,570,244	+		TX73_016355	0.36	-0.0
3,570,244	+		TX73_016355	0.36	+0.8
3,570,251	-		TX73_016355	0.37	-0.9
3,570,252	-		TX73_016355	0.37	+0.2
3,570,271	-		TX73_016355	0.38	-0.4
3,570,292	+		TX73_016355	0.40	-0.7
3,570,292	+		TX73_016355	0.40	-0.6
3,570,293	-		TX73_016355	0.40	+0.2
3,570,300	-		TX73_016355	0.40	+0.2
3,570,314	+		TX73_016355	0.41	-0.1
3,570,339	+		TX73_016355	0.43	+0.2
3,570,366	+		TX73_016355	0.45	+0.2
3,570,366	+		TX73_016355	0.45	-0.3
3,570,374	-		TX73_016355	0.45	-0.1
3,570,374	-		TX73_016355	0.45	-0.6
3,570,386	-		TX73_016355	0.46	+0.1
3,570,392	+		TX73_016355	0.47	+0.9
3,570,424	+		TX73_016355	0.49	+0.7
3,570,432	-		TX73_016355	0.50	+0.8
3,570,452	+		TX73_016355	0.51	-0.7
3,570,452	-		TX73_016355	0.51	-1.0
3,570,474	-		TX73_016355	0.53	+0.7
3,570,476	+		TX73_016355	0.53	-0.0
3,570,476	+		TX73_016355	0.53	+1.2
3,570,484	-		TX73_016355	0.53	+0.2
3,570,488	+		TX73_016355	0.54	+0.4
3,570,519	-		TX73_016355	0.56	-0.0
3,570,534	+		TX73_016355	0.57	-1.0
3,570,537	+		TX73_016355	0.57	-0.6
3,570,540	+		TX73_016355	0.57	+0.2
3,570,559	+		TX73_016355	0.59	-0.1
3,570,559	+		TX73_016355	0.59	-0.7
3,570,620	+		TX73_016355	0.63	-0.2
3,570,622	+		TX73_016355	0.63	-0.6
3,570,628	+		TX73_016355	0.63	-0.0
3,570,628	+		TX73_016355	0.63	+0.4
3,570,628	+		TX73_016355	0.63	+0.4
3,570,636	-		TX73_016355	0.64	-0.5
3,570,636	-		TX73_016355	0.64	-0.8
3,570,658	+		TX73_016355	0.65	+0.6
3,570,662	+		TX73_016355	0.66	+0.3
3,570,662	+		TX73_016355	0.66	-0.5
3,570,728	+		TX73_016355	0.70	+1.2
3,570,758	-		TX73_016355	0.73	+0.1
3,570,759	-		TX73_016355	0.73	-1.2
3,570,772	+		TX73_016355	0.73	-1.9
3,570,782	+		TX73_016355	0.74	+0.8
3,570,804	-		TX73_016355	0.76	-0.2
3,570,845	+		TX73_016355	0.79	+0.6
3,570,853	-		TX73_016355	0.79	-0.8
3,570,853	-		TX73_016355	0.79	-0.5
3,570,853	-		TX73_016355	0.79	+0.2
3,570,866	+		TX73_016355	0.80	-0.1
3,570,868	+		TX73_016355	0.80	+0.4
3,570,885	-		TX73_016355	0.81	+0.0
3,570,895	-		TX73_016355	0.82	-0.5
3,570,895	-		TX73_016355	0.82	-0.0
3,570,897	+		TX73_016355	0.82	-0.1
3,570,925	+		TX73_016355	0.84	-0.5
3,570,948	-		TX73_016355	0.86	+0.5
3,570,952	+		TX73_016355	0.86	-0.7
3,570,960	-		TX73_016355	0.87	-0.7
3,570,960	-		TX73_016355	0.87	-0.0
3,570,965	-		TX73_016355	0.87	-0.6
3,570,976	+		TX73_016355	0.88	+0.6
3,570,992	+		TX73_016355	0.89	+0.0
3,571,001	-		TX73_016355	0.90	-2.4
3,571,014	+				+0.2
3,571,020	-				-0.9
3,571,060	+				-0.0
3,571,096	+				+0.3
3,571,120	-				-0.1
3,571,130	+				-0.2
3,571,138	-				-0.6
3,571,143	+				+0.0
3,571,144	+				-0.0
3,571,204	-				-0.3
3,571,209	+				-0.5
3,571,217	-				+0.5
3,571,257	-				-0.5
3,571,287	-				+0.7
3,571,296	+				-0.1
3,571,298	+				+0.2
3,571,298	+				-0.4
3,571,298	+				+0.2
3,571,306	+				+0.2
3,571,306	-				-0.0
3,571,358	+				-0.3
3,571,365	+				+0.3
3,571,385	+				+0.4
3,571,388	-				-0.9
3,571,400	+		TX73_016360	0.11	-0.5
3,571,408	-		TX73_016360	0.12	-0.4
3,571,408	-		TX73_016360	0.12	+0.3
3,571,423	+		TX73_016360	0.14	-0.2
3,571,423	+		TX73_016360	0.14	+0.1
3,571,460	-		TX73_016360	0.19	+0.2
3,571,490	+		TX73_016360	0.22	+0.5
3,571,500	+		TX73_016360	0.24	+0.5
3,571,508	-		TX73_016360	0.25	-0.7
3,571,508	-		TX73_016360	0.25	-0.5
3,571,508	-		TX73_016360	0.25	+0.3
3,571,515	-		TX73_016360	0.25	+0.3
3,571,517	-		TX73_016360	0.26	+0.7
3,571,526	+		TX73_016360	0.27	-0.2
3,571,537	+		TX73_016360	0.28	-0.5
3,571,540	-		TX73_016360	0.28	-0.5
3,571,564	+		TX73_016360	0.31	-0.1
3,571,590	-		TX73_016360	0.35	-0.8
3,571,603	+		TX73_016360	0.36	+0.5
3,571,603	+		TX73_016360	0.36	-0.1
3,571,613	+		TX73_016360	0.38	-0.1
3,571,613	+		TX73_016360	0.38	-0.5
3,571,621	-		TX73_016360	0.39	-1.3
3,571,645	+		TX73_016360	0.42	+0.6
3,571,659	+		TX73_016360	0.43	-0.8
3,571,664	+		TX73_016360	0.44	-0.3
3,571,664	+		TX73_016360	0.44	-0.3
3,571,664	+		TX73_016360	0.44	-0.3
3,571,664	+		TX73_016360	0.44	-1.0
3,571,664	+		TX73_016360	0.44	-0.2
3,571,666	+		TX73_016360	0.44	+0.9
3,571,672	-		TX73_016360	0.45	+0.4
3,571,674	-		TX73_016360	0.45	-0.1
3,571,682	-		TX73_016360	0.46	-0.2
3,571,689	+		TX73_016360	0.47	-1.2
3,571,689	+		TX73_016360	0.47	+0.2
3,571,696	+		TX73_016360	0.48	+0.2
3,571,697	-		TX73_016360	0.48	-0.5
3,571,702	+		TX73_016360	0.49	+0.1
3,571,712	+		TX73_016360	0.50	+0.6
3,571,712	+		TX73_016360	0.50	-0.8
3,571,749	-		TX73_016360	0.54	+0.2
3,571,754	-		TX73_016360	0.55	-0.5
3,571,765	-		TX73_016360	0.56	+0.1
3,571,768	+		TX73_016360	0.57	+0.2
3,571,819	-		TX73_016360	0.63	-0.9
3,571,826	+		TX73_016360	0.64	-0.0
3,571,833	+		TX73_016360	0.65	+0.4
3,571,864	+		TX73_016360	0.69	-0.5
3,571,864	+		TX73_016360	0.69	+0.2
3,571,867	-		TX73_016360	0.69	+0.1
3,571,869	+		TX73_016360	0.69	-0.7
3,571,903	+		TX73_016360	0.74	-1.5
3,571,913	+		TX73_016360	0.75	+0.1
3,571,913	+		TX73_016360	0.75	-0.5
3,571,913	+		TX73_016360	0.75	+0.1
3,571,913	+		TX73_016360	0.75	-0.2
3,571,913	+		TX73_016360	0.75	+0.4
3,571,913	+		TX73_016360	0.75	-0.9
3,571,919	+		TX73_016360	0.76	-3.2
3,571,939	+		TX73_016360	0.78	-0.5
3,571,954	+		TX73_016360	0.80	-0.3
3,571,985	-		TX73_016360	0.84	-0.2
3,572,047	+				-1.1
3,572,054	+				+0.5
3,572,056	+				-0.5
3,572,096	+				+0.2
3,572,101	+				+0.5
3,572,104	-				+0.1
3,572,119	+				-0.2
3,572,121	-				+0.2