Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013945

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,061,245	+		TX73_013935	0.65	+0.5
3,061,258	-		TX73_013935	0.68	-0.2
3,061,262	-		TX73_013935	0.68	-1.3
3,061,274	-		TX73_013935	0.70	+0.4
3,061,294	-		TX73_013935	0.74	-0.1
3,061,314	+		TX73_013935	0.77	-0.3
3,061,317	+		TX73_013935	0.78	+0.2
3,061,332	-		TX73_013935	0.80	-0.1
3,061,332	-		TX73_013935	0.80	+0.6
3,061,372	+		TX73_013935	0.87	+0.4
3,061,412	+				-0.1
3,061,431	-				+0.3
3,061,431	-				+0.7
3,061,436	-				+0.7
3,061,506	+				-0.6
3,061,506	+				+0.7
3,061,562	+				+0.2
3,061,570	-				+0.2
3,061,574	+				-0.1
3,061,648	+		TX73_013940	0.13	-0.6
3,061,656	-		TX73_013940	0.15	+0.4
3,061,656	-		TX73_013940	0.15	-0.4
3,061,684	+		TX73_013940	0.19	+1.2
3,061,716	-		TX73_013940	0.23	-2.2
3,061,750	-		TX73_013940	0.28	+0.2
3,061,917	+		TX73_013940	0.53	-0.1
3,061,917	+		TX73_013940	0.53	+0.6
3,061,930	-		TX73_013940	0.55	-0.4
3,061,941	-		TX73_013940	0.57	-0.0
3,061,957	+		TX73_013940	0.59	+0.4
3,061,965	+		TX73_013940	0.60	-0.5
3,061,970	+		TX73_013940	0.61	-0.1
3,061,970	+		TX73_013940	0.61	+0.2
3,061,970	+		TX73_013940	0.61	-0.0
3,061,970	+		TX73_013940	0.61	+0.5
3,061,970	+		TX73_013940	0.61	+0.1
3,061,978	-		TX73_013940	0.62	+0.1
3,061,978	-		TX73_013940	0.62	-0.2
3,061,978	-		TX73_013940	0.62	+0.3
3,061,978	-		TX73_013940	0.62	+0.1
3,061,978	-		TX73_013940	0.62	-2.1
3,061,983	-		TX73_013940	0.63	-0.8
3,061,983	-		TX73_013940	0.63	-0.2
3,061,989	-		TX73_013940	0.64	-0.6
3,062,013	-		TX73_013940	0.67	-0.6
3,062,019	+		TX73_013940	0.68	+0.3
3,062,024	+		TX73_013940	0.69	+0.6
3,062,048	-		TX73_013940	0.73	-0.6
3,062,059	-		TX73_013940	0.74	-0.2
3,062,083	-		TX73_013940	0.78	-0.7
3,062,097	+		TX73_013940	0.80	+0.4
3,062,102	+		TX73_013940	0.81	+0.0
3,062,127	+		TX73_013940	0.84	+0.4
3,062,158	+		TX73_013940	0.89	-0.0
3,062,166	-				-0.6
3,062,175	-				-0.2
3,062,181	+				+0.5
3,062,185	-				-1.1
3,062,189	-				+0.1
3,062,189	-				-0.6
3,062,199	-				-0.2
3,062,200	-				+0.2
3,062,205	+				-0.4
3,062,205	+				-0.6
3,062,205	+				+0.0
3,062,205	+				-1.5
3,062,213	-				-1.7
3,062,213	-				+0.3
3,062,232	-				-0.2
3,062,235	+				+0.1
3,062,235	+				-0.5
3,062,243	-				-1.3
3,062,250	+				+0.4
3,062,265	-				-1.5
3,062,295	+				-2.3
3,062,390	+		TX73_013945	0.23	-1.5
3,062,406	+		TX73_013945	0.26	-0.2
3,062,414	-		TX73_013945	0.27	-0.7
3,062,414	-		TX73_013945	0.27	-1.9
3,062,461	+		TX73_013945	0.34	+0.2
3,062,475	+		TX73_013945	0.36	+0.3
3,062,485	-		TX73_013945	0.38	-1.6
3,062,490	+		TX73_013945	0.39	-1.7
3,062,500	+		TX73_013945	0.40	-1.6
3,062,508	-		TX73_013945	0.41	+1.3
3,062,530	+		TX73_013945	0.45	-0.2
3,062,538	-		TX73_013945	0.46	-0.2
3,062,543	-		TX73_013945	0.47	+0.3
3,062,543	-		TX73_013945	0.47	+0.8
3,062,548	-		TX73_013945	0.48	-1.2
3,062,548	-		TX73_013945	0.48	-0.6
3,062,554	-		TX73_013945	0.49	-0.3
3,062,567	+		TX73_013945	0.51	-1.3
3,062,568	+		TX73_013945	0.51	+0.1
3,062,578	-		TX73_013945	0.52	-2.4
3,062,595	+		TX73_013945	0.55	-0.6
3,062,599	+		TX73_013945	0.55	+1.1
3,062,604	+		TX73_013945	0.56	-0.5
3,062,604	+		TX73_013945	0.56	-0.2
3,062,605	+		TX73_013945	0.56	-0.8
3,062,619	-		TX73_013945	0.59	-0.2
3,062,621	+		TX73_013945	0.59	-2.1
3,062,634	+		TX73_013945	0.61	-0.4
3,062,651	+		TX73_013945	0.63	-1.6
3,062,651	+		TX73_013945	0.63	-1.4
3,062,665	+		TX73_013945	0.66	-2.0
3,062,672	-		TX73_013945	0.67	-0.4
3,062,673	-		TX73_013945	0.67	-1.4
3,062,673	-		TX73_013945	0.67	-1.2
3,062,673	-		TX73_013945	0.67	+0.0
3,062,681	-		TX73_013945	0.68	-1.4
3,062,681	-		TX73_013945	0.68	-0.2
3,062,686	-		TX73_013945	0.69	+0.4
3,062,730	-		TX73_013945	0.76	-0.6
3,062,732	+		TX73_013945	0.76	-2.3
3,062,742	+		TX73_013945	0.77	+0.3
3,062,745	-		TX73_013945	0.78	-0.7
3,062,750	-		TX73_013945	0.79	+0.4
3,062,759	+		TX73_013945	0.80	+0.5
3,062,811	+		TX73_013945	0.88	+0.3
3,062,830	+				-1.8
3,062,837	+				+1.8
3,062,838	-				-1.1
3,062,856	-				-1.1
3,062,894	+				+0.2
3,062,894	-				-1.7
3,062,896	+				-1.1
3,062,902	-				-0.4
3,062,979	-				-0.1
3,062,984	-				+0.8
3,062,989	-				+0.1
3,062,995	+				-2.0
3,063,003	-				-0.3
3,063,032	-				+0.4
3,063,059	+				+0.1
3,063,075	+				-1.0
3,063,126	-				-1.0
3,063,128	-				+0.3
3,063,134	-				-2.0
3,063,622	+				-0.4
3,063,630	-				+1.1
3,063,650	-				-0.4
3,063,662	+				-1.0
3,063,677	+				-0.5
3,063,685	-				+0.2
3,063,717	+				-1.9
3,063,718	-				-0.5
3,063,727	+				-0.6
3,063,730	-				-0.2
3,063,732	+				-1.0
3,063,734	+				+0.5
3,063,739	+				+1.1
3,063,740	-				-0.2
3,063,752	-				-0.3
3,063,754	+				-2.0
3,063,754	+				-0.8
3,063,754	+				-0.1
3,063,754	+				+0.3
3,063,754	+				+0.9
3,063,754	+				-0.8
3,063,754	+				+1.0
3,063,754	+				+0.7
3,063,754	+				-0.6
3,063,754	+				-0.6
3,063,754	+				+0.0
3,063,754	+				-1.4
3,063,754	+				-0.5
3,063,754	+				-0.3
3,063,754	+				+1.0
3,063,754	+				-1.2
3,063,754	+				-0.8
3,063,754	+				-0.1
3,063,754	+				+0.3
3,063,754	+				-3.2
3,063,754	+				+0.1
3,063,755	+				+0.5
3,063,762	-				+0.1
3,063,762	-				-0.9
3,063,762	-				-0.5
3,063,762	-				+0.1
3,063,762	-				-0.3
3,063,762	-				-0.9
3,063,762	-				-0.2
3,063,762	-				-0.0
3,063,762	-				-0.8
3,063,762	-				-0.5
3,063,762	-				-0.3
3,063,762	-				+1.7
3,063,762	-				-0.4
3,063,762	-				+0.4
3,063,814	+				-1.0
3,063,822	+				-2.3
3,063,823	-				-0.2
3,063,830	-				-0.8
3,063,830	-				-0.3
3,063,830	-				-1.2
3,063,857	+				-0.9
3,063,865	-				+1.0
3,063,878	+				-0.1