Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000625

Experiment: PM with succinate aerobic in dark

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_000615 and TX73_000620 are separated by 7 nucleotidesTX73_000620 and TX73_000625 are separated by 92 nucleotidesTX73_000625 and TX73_000630 are separated by 131 nucleotides TX73_000615: TX73_000615 - dTDP-4-dehydrorhamnose reductase, at 133,891 to 134,784 _000615 TX73_000620: TX73_000620 - glucose-1-phosphate thymidylyltransferase RfbA, at 134,792 to 135,661 _000620 TX73_000625: TX73_000625 - hypothetical protein, at 135,754 to 136,602 _000625 TX73_000630: TX73_000630 - ATP-binding protein, at 136,734 to 139,013 _000630 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 134.823 kb on + strandat 134.823 kb on + strandat 134.831 kb on - strandat 134.831 kb on - strandat 134.852 kb on - strandat 134.936 kb on + strand, within TX73_000620at 134.944 kb on - strand, within TX73_000620at 134.981 kb on + strand, within TX73_000620at 135.021 kb on + strand, within TX73_000620at 135.024 kb on - strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.053 kb on - strand, within TX73_000620at 135.063 kb on - strand, within TX73_000620at 135.192 kb on + strand, within TX73_000620at 135.223 kb on - strand, within TX73_000620at 135.275 kb on + strand, within TX73_000620at 135.284 kb on + strand, within TX73_000620at 135.307 kb on - strand, within TX73_000620at 135.378 kb on + strand, within TX73_000620at 135.437 kb on + strand, within TX73_000620at 135.517 kb on + strand, within TX73_000620at 135.519 kb on - strand, within TX73_000620at 135.524 kb on + strand, within TX73_000620at 135.540 kb on + strand, within TX73_000620at 135.548 kb on - strand, within TX73_000620at 135.550 kb on - strand, within TX73_000620at 135.576 kb on + strandat 135.579 kb on - strandat 135.585 kb on + strandat 135.655 kb on + strandat 135.663 kb on - strandat 135.663 kb on - strandat 135.673 kb on - strandat 135.715 kb on - strandat 135.715 kb on - strandat 135.746 kb on - strandat 135.768 kb on - strandat 135.775 kb on - strandat 135.819 kb on + strandat 135.825 kb on - strandat 135.827 kb on - strandat 135.885 kb on - strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.927 kb on + strand, within TX73_000625at 135.935 kb on - strand, within TX73_000625at 135.935 kb on - strand, within TX73_000625at 135.936 kb on + strand, within TX73_000625at 136.030 kb on + strand, within TX73_000625at 136.038 kb on - strand, within TX73_000625at 136.098 kb on + strand, within TX73_000625at 136.178 kb on + strand, within TX73_000625at 136.188 kb on - strand, within TX73_000625at 136.196 kb on - strand, within TX73_000625at 136.208 kb on + strand, within TX73_000625at 136.212 kb on + strand, within TX73_000625at 136.235 kb on + strand, within TX73_000625at 136.260 kb on + strand, within TX73_000625at 136.260 kb on + strand, within TX73_000625at 136.273 kb on - strand, within TX73_000625at 136.300 kb on + strand, within TX73_000625at 136.335 kb on - strand, within TX73_000625at 136.368 kb on + strand, within TX73_000625at 136.368 kb on + strand, within TX73_000625at 136.376 kb on - strand, within TX73_000625at 136.381 kb on + strand, within TX73_000625at 136.386 kb on + strand, within TX73_000625at 136.387 kb on + strand, within TX73_000625at 136.406 kb on + strand, within TX73_000625at 136.437 kb on - strand, within TX73_000625at 136.451 kb on + strand, within TX73_000625at 136.459 kb on - strand, within TX73_000625at 136.470 kb on + strand, within TX73_000625at 136.474 kb on - strand, within TX73_000625at 136.478 kb on - strand, within TX73_000625at 136.493 kb on - strand, within TX73_000625at 136.494 kb on + strand, within TX73_000625at 136.502 kb on - strand, within TX73_000625at 136.509 kb on + strand, within TX73_000625at 136.509 kb on + strand, within TX73_000625at 136.517 kb on - strand, within TX73_000625at 136.545 kb on - strandat 136.611 kb on - strandat 136.618 kb on - strandat 136.740 kb on - strandat 136.805 kb on + strandat 136.813 kb on + strandat 136.821 kb on - strandat 136.831 kb on - strandat 136.845 kb on - strandat 136.867 kb on + strandat 136.957 kb on + strandat 136.966 kb on + strand, within TX73_000630at 136.982 kb on - strand, within TX73_000630at 136.986 kb on + strand, within TX73_000630at 137.000 kb on + strand, within TX73_000630at 137.013 kb on - strand, within TX73_000630at 137.013 kb on - strand, within TX73_000630at 137.015 kb on + strand, within TX73_000630at 137.015 kb on + strand, within TX73_000630at 137.044 kb on + strand, within TX73_000630at 137.049 kb on + strand, within TX73_000630at 137.052 kb on - strand, within TX73_000630at 137.054 kb on + strand, within TX73_000630at 137.057 kb on - strand, within TX73_000630at 137.057 kb on - strand, within TX73_000630at 137.057 kb on - strand, within TX73_000630at 137.057 kb on - strand, within TX73_000630at 137.057 kb on - strand, within TX73_000630at 137.137 kb on + strand, within TX73_000630at 137.144 kb on + strand, within TX73_000630at 137.144 kb on - strand, within TX73_000630at 137.157 kb on - strand, within TX73_000630at 137.175 kb on + strand, within TX73_000630at 137.186 kb on + strand, within TX73_000630at 137.244 kb on + strand, within TX73_000630at 137.262 kb on + strand, within TX73_000630at 137.263 kb on - strand, within TX73_000630at 137.302 kb on - strand, within TX73_000630at 137.328 kb on - strand, within TX73_000630at 137.393 kb on + strand, within TX73_000630at 137.393 kb on + strand, within TX73_000630at 137.401 kb on - strand, within TX73_000630at 137.401 kb on - strand, within TX73_000630at 137.435 kb on + strand, within TX73_000630at 137.459 kb on + strand, within TX73_000630at 137.519 kb on - strand, within TX73_000630at 137.539 kb on - strand, within TX73_000630at 137.564 kb on - strand, within TX73_000630at 137.570 kb on + strand, within TX73_000630at 137.592 kb on + strand, within TX73_000630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark
remove
134,823 + +0.9
134,823 + +0.0
134,831 - +0.6
134,831 - +0.1
134,852 - +0.1
134,936 + TX73_000620 0.17 +0.1
134,944 - TX73_000620 0.17 -1.0
134,981 + TX73_000620 0.22 +0.3
135,021 + TX73_000620 0.26 -2.5
135,024 - TX73_000620 0.27 +0.9
135,031 + TX73_000620 0.27 +0.2
135,031 + TX73_000620 0.27 +0.4
135,039 - TX73_000620 0.28 +0.4
135,039 - TX73_000620 0.28 +0.8
135,039 - TX73_000620 0.28 +0.6
135,053 - TX73_000620 0.30 -0.8
135,063 - TX73_000620 0.31 +0.4
135,192 + TX73_000620 0.46 +1.0
135,223 - TX73_000620 0.50 +0.3
135,275 + TX73_000620 0.56 -1.1
135,284 + TX73_000620 0.57 +0.6
135,307 - TX73_000620 0.59 +0.0
135,378 + TX73_000620 0.67 -0.7
135,437 + TX73_000620 0.74 -0.3
135,517 + TX73_000620 0.83 +0.4
135,519 - TX73_000620 0.84 -0.1
135,524 + TX73_000620 0.84 -0.4
135,540 + TX73_000620 0.86 +0.7
135,548 - TX73_000620 0.87 +0.8
135,550 - TX73_000620 0.87 -0.6
135,576 + +0.7
135,579 - -0.0
135,585 + +1.1
135,655 + +0.4
135,663 - -0.1
135,663 - +0.3
135,673 - +0.6
135,715 - +0.4
135,715 - +0.2
135,746 - +0.2
135,768 - +0.6
135,775 - +0.5
135,819 + +0.1
135,825 - +0.0
135,827 - +0.4
135,885 - TX73_000625 0.15 +0.8
135,927 + TX73_000625 0.20 -0.1
135,927 + TX73_000625 0.20 +0.5
135,927 + TX73_000625 0.20 +0.3
135,935 - TX73_000625 0.21 -0.3
135,935 - TX73_000625 0.21 -0.2
135,936 + TX73_000625 0.21 -1.0
136,030 + TX73_000625 0.33 -0.2
136,038 - TX73_000625 0.33 +0.3
136,098 + TX73_000625 0.41 +0.1
136,178 + TX73_000625 0.50 +0.8
136,188 - TX73_000625 0.51 +1.2
136,196 - TX73_000625 0.52 +0.3
136,208 + TX73_000625 0.53 +0.1
136,212 + TX73_000625 0.54 +0.9
136,235 + TX73_000625 0.57 +0.0
136,260 + TX73_000625 0.60 +0.6
136,260 + TX73_000625 0.60 +0.6
136,273 - TX73_000625 0.61 +0.1
136,300 + TX73_000625 0.64 +1.0
136,335 - TX73_000625 0.68 +0.4
136,368 + TX73_000625 0.72 +0.4
136,368 + TX73_000625 0.72 +0.3
136,376 - TX73_000625 0.73 -1.7
136,381 + TX73_000625 0.74 +0.2
136,386 + TX73_000625 0.74 -0.1
136,387 + TX73_000625 0.75 +0.2
136,406 + TX73_000625 0.77 -1.3
136,437 - TX73_000625 0.80 +0.4
136,451 + TX73_000625 0.82 -1.5
136,459 - TX73_000625 0.83 +0.6
136,470 + TX73_000625 0.84 +0.2
136,474 - TX73_000625 0.85 +0.6
136,478 - TX73_000625 0.85 +0.0
136,493 - TX73_000625 0.87 -0.1
136,494 + TX73_000625 0.87 -0.7
136,502 - TX73_000625 0.88 +0.5
136,509 + TX73_000625 0.89 -0.1
136,509 + TX73_000625 0.89 -0.0
136,517 - TX73_000625 0.90 +0.8
136,545 - +0.4
136,611 - +0.7
136,618 - +0.5
136,740 - +0.4
136,805 + -0.3
136,813 + -1.2
136,821 - +0.4
136,831 - -0.1
136,845 - +0.4
136,867 + +0.4
136,957 + +0.3
136,966 + TX73_000630 0.10 +0.2
136,982 - TX73_000630 0.11 -0.0
136,986 + TX73_000630 0.11 -0.2
137,000 + TX73_000630 0.12 +0.6
137,013 - TX73_000630 0.12 -0.0
137,013 - TX73_000630 0.12 +0.3
137,015 + TX73_000630 0.12 +0.8
137,015 + TX73_000630 0.12 -0.3
137,044 + TX73_000630 0.14 +0.8
137,049 + TX73_000630 0.14 +1.4
137,052 - TX73_000630 0.14 +0.2
137,054 + TX73_000630 0.14 -0.2
137,057 - TX73_000630 0.14 +0.2
137,057 - TX73_000630 0.14 +0.8
137,057 - TX73_000630 0.14 +0.9
137,057 - TX73_000630 0.14 +0.2
137,057 - TX73_000630 0.14 +0.2
137,137 + TX73_000630 0.18 +0.3
137,144 + TX73_000630 0.18 -0.0
137,144 - TX73_000630 0.18 -0.2
137,157 - TX73_000630 0.19 +0.6
137,175 + TX73_000630 0.19 +1.1
137,186 + TX73_000630 0.20 -0.3
137,244 + TX73_000630 0.22 +0.8
137,262 + TX73_000630 0.23 +0.1
137,263 - TX73_000630 0.23 +0.6
137,302 - TX73_000630 0.25 +1.3
137,328 - TX73_000630 0.26 +0.1
137,393 + TX73_000630 0.29 +0.1
137,393 + TX73_000630 0.29 +0.6
137,401 - TX73_000630 0.29 +0.3
137,401 - TX73_000630 0.29 +0.8
137,435 + TX73_000630 0.31 -0.3
137,459 + TX73_000630 0.32 +0.1
137,519 - TX73_000630 0.34 +0.1
137,539 - TX73_000630 0.35 -0.1
137,564 - TX73_000630 0.36 +0.2
137,570 + TX73_000630 0.37 +1.6
137,592 + TX73_000630 0.38 -0.1

Or see this region's nucleotide sequence