Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017680

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,860,806	-				+0.3
3,860,811	+				+0.3
3,860,818	+				-1.1
3,860,818	+				+0.4
3,860,818	-				+0.4
3,860,819	-				-0.9
3,860,864	+				+0.6
3,860,869	+				+1.1
3,860,872	-				-2.3
3,860,872	-				+0.1
3,860,881	+				+0.4
3,860,891	-				-1.5
3,860,891	-				-0.4
3,860,899	+				+0.1
3,860,904	+				-0.2
3,860,912	-				-0.1
3,860,915	+				-0.7
3,860,920	+				+1.0
3,860,920	+				+0.1
3,860,920	+				-1.6
3,860,923	-				-1.2
3,860,928	-				+0.7
3,860,928	-				-0.4
3,860,928	-				+1.3
3,860,928	-				+0.3
3,860,928	-				-0.0
3,860,928	-				-0.0
3,860,939	+				+1.4
3,860,946	+				-1.5
3,860,946	+				+0.5
3,860,946	+				+0.1
3,860,946	+				+0.3
3,860,946	+				-0.5
3,860,946	+				+0.8
3,860,946	+				-0.2
3,860,954	-				-0.3
3,860,954	-				-1.1
3,860,954	-				-0.7
3,860,954	-				-0.8
3,860,962	-				+2.2
3,860,971	-				+0.2
3,860,985	+				+0.5
3,860,997	+				+0.7
3,860,997	+				-0.1
3,861,005	-				+0.2
3,861,005	-				+0.7
3,861,005	-				-0.2
3,861,005	-				-1.8
3,861,005	-				-0.6
3,861,005	-				-0.3
3,861,005	-				+0.9
3,861,005	-				+0.2
3,861,005	-				+1.0
3,861,005	-				+0.1
3,861,007	+				+0.4
3,861,020	+				-0.6
3,861,020	+				-1.0
3,861,025	+				-0.3
3,861,028	-				-0.4
3,861,029	-				-0.0
3,861,029	-				+0.7
3,861,119	-				-1.8
3,861,122	-				+0.0
3,861,122	-				-0.2
3,861,138	+				+0.8
3,861,138	+				+0.9
3,861,142	+				-0.6
3,861,162	-				+0.4
3,861,163	+				+0.3
3,861,165	+				-0.0
3,861,166	+				+0.6
3,861,168	+				-0.5
3,861,173	+				-0.0
3,861,175	+				+0.9
3,861,176	+				-0.5
3,861,176	-				+0.1
3,861,184	+				-0.4
3,861,184	+				-1.1
3,861,200	+				+0.9
3,861,210	+				+0.1
3,861,210	+				-0.3
3,861,210	+				-0.1
3,861,210	+				-1.4
3,861,210	+				+0.7
3,861,210	+				-0.7
3,861,215	+				-0.2
3,861,215	+				+0.1
3,861,218	-				-0.3
3,861,218	-				+0.3
3,861,218	-				+2.3
3,861,218	-				+0.9
3,861,218	-				-1.5
3,861,218	-				-0.3
3,861,218	-				+0.9
3,861,220	+				-0.3
3,861,224	-				+0.1
3,861,246	+				+0.3
3,861,254	-				-1.2
3,861,297	+				+1.7
3,861,308	+				-0.1
3,861,312	+				+1.6
3,861,349	-		TX73_017675	0.16	-0.4
3,861,375	-		TX73_017675	0.20	-0.1
3,861,388	+		TX73_017675	0.22	+1.3
3,861,396	-		TX73_017675	0.24	+0.2
3,861,407	+		TX73_017675	0.26	+0.2
3,861,412	-		TX73_017675	0.27	-1.2
3,861,421	+		TX73_017675	0.28	+0.5
3,861,426	+		TX73_017675	0.29	+1.3
3,861,434	-		TX73_017675	0.31	+0.9
3,861,443	+		TX73_017675	0.32	+0.1
3,861,445	+		TX73_017675	0.32	+0.1
3,861,450	+		TX73_017675	0.33	+1.2
3,861,450	+		TX73_017675	0.33	-0.2
3,861,451	-		TX73_017675	0.34	-1.2
3,861,457	+		TX73_017675	0.35	-0.4
3,861,457	+		TX73_017675	0.35	+1.5
3,861,457	+		TX73_017675	0.35	+0.9
3,861,457	+		TX73_017675	0.35	+1.0
3,861,457	+		TX73_017675	0.35	+0.3
3,861,463	-		TX73_017675	0.36	-1.3
3,861,465	-		TX73_017675	0.36	+0.2
3,861,465	-		TX73_017675	0.36	+0.1
3,861,472	-		TX73_017675	0.37	+0.6
3,861,489	+		TX73_017675	0.40	-2.1
3,861,489	+		TX73_017675	0.40	+0.8
3,861,507	-		TX73_017675	0.43	-0.4
3,861,518	+		TX73_017675	0.45	-0.5
3,861,526	-		TX73_017675	0.47	-1.2
3,861,526	-		TX73_017675	0.47	+0.3
3,861,526	-		TX73_017675	0.47	+1.2
3,861,536	+		TX73_017675	0.48	-1.1
3,861,539	-		TX73_017675	0.49	-0.0
3,861,543	+		TX73_017675	0.50	-0.3
3,861,597	+		TX73_017675	0.59	+0.5
3,861,597	+		TX73_017675	0.59	+1.1
3,861,605	-		TX73_017675	0.61	-0.1
3,861,605	-		TX73_017675	0.61	+1.0
3,861,605	-		TX73_017675	0.61	-0.4
3,861,605	-		TX73_017675	0.61	-2.3
3,861,612	-		TX73_017675	0.62	+1.1
3,861,621	-		TX73_017675	0.63	-0.7
3,861,641	+		TX73_017675	0.67	+0.2
3,861,641	+		TX73_017675	0.67	+0.2
3,861,643	+		TX73_017675	0.67	+0.3
3,861,643	+		TX73_017675	0.67	+1.2
3,861,651	-		TX73_017675	0.69	-1.9
3,861,659	-		TX73_017675	0.70	+0.2
3,861,664	+		TX73_017675	0.71	+1.4
3,861,667	-		TX73_017675	0.71	-0.6
3,861,667	-		TX73_017675	0.71	-1.7
3,861,668	+		TX73_017675	0.72	+0.9
3,861,668	+		TX73_017675	0.72	-1.5
3,861,678	+		TX73_017675	0.73	+1.2
3,861,692	+		TX73_017675	0.76	+2.3
3,861,702	+		TX73_017675	0.78	+0.7
3,861,722	-		TX73_017675	0.81	+1.5
3,861,740	-		TX73_017675	0.84	-0.8
3,861,747	+		TX73_017675	0.85	-0.1
3,861,788	+				+0.8
3,861,791	-				+0.0
3,861,829	+				+0.0
3,861,832	-				-0.5
3,861,846	+				-1.4
3,861,846	+				-0.2
3,861,859	-				-1.6
3,861,910	-		TX73_017680	0.15	-1.0
3,861,910	-		TX73_017680	0.15	-0.6
3,861,911	-		TX73_017680	0.15	+0.1
3,861,933	-		TX73_017680	0.18	-0.7
3,861,967	+		TX73_017680	0.22	-1.2
3,861,979	-		TX73_017680	0.24	-0.4
3,861,996	-		TX73_017680	0.26	+0.0
3,862,019	+		TX73_017680	0.29	-2.3
3,862,031	+		TX73_017680	0.30	+0.2
3,862,053	+		TX73_017680	0.33	+0.2
3,862,091	-		TX73_017680	0.38	+1.6
3,862,133	-		TX73_017680	0.44	+0.3
3,862,135	-		TX73_017680	0.44	+0.1
3,862,142	+		TX73_017680	0.45	-0.8
3,862,144	+		TX73_017680	0.45	+0.0
3,862,159	-		TX73_017680	0.47	-0.9
3,862,188	-		TX73_017680	0.51	-0.1
3,862,202	+		TX73_017680	0.53	+0.7
3,862,205	-		TX73_017680	0.53	+0.1
3,862,205	-		TX73_017680	0.53	+0.3
3,862,207	+		TX73_017680	0.53	-1.0
3,862,212	+		TX73_017680	0.54	+0.8
3,862,230	-		TX73_017680	0.56	-0.5
3,862,230	-		TX73_017680	0.56	-0.5
3,862,230	-		TX73_017680	0.56	+0.0
3,862,243	-		TX73_017680	0.58	-0.8
3,862,245	-		TX73_017680	0.58	-1.4
3,862,259	+		TX73_017680	0.60	-0.1
3,862,267	-		TX73_017680	0.61	+0.4
3,862,292	-		TX73_017680	0.64	+0.0
3,862,315	+		TX73_017680	0.67	+0.4
3,862,342	-		TX73_017680	0.71	-0.6
3,862,357	-		TX73_017680	0.73	-0.3
3,862,373	+		TX73_017680	0.75	+0.0
3,862,381	-		TX73_017680	0.76	+0.6
3,862,386	-		TX73_017680	0.77	+0.5
3,862,392	+		TX73_017680	0.78	-0.6
3,862,400	-		TX73_017680	0.79	+0.9
3,862,402	-		TX73_017680	0.79	+1.3
3,862,404	-		TX73_017680	0.79	-0.0
3,862,440	+		TX73_017680	0.84	-0.8
3,862,451	+		TX73_017680	0.85	+0.4
3,862,451	+		TX73_017680	0.85	-0.7
3,862,455	+		TX73_017680	0.86	-0.4
3,862,458	-		TX73_017680	0.86	+0.8
3,862,459	-		TX73_017680	0.86	-1.0
3,862,459	-		TX73_017680	0.86	-0.8
3,862,459	-		TX73_017680	0.86	-0.4
3,862,463	-		TX73_017680	0.87	+0.8
3,862,486	-		TX73_017680	0.90	+0.3
3,862,496	-				-0.1
3,862,501	-				-1.7
3,862,552	+				-0.5
3,862,555	+				-0.0
3,862,583	+				+0.8
3,862,588	+				+0.3
3,862,596	-				+0.3
3,862,598	-				+0.1
3,862,624	-				+0.6
3,862,662	-				+0.8
3,862,662	-				+0.4
3,862,662	-				+0.3
3,862,687	+				-0.7
3,862,687	+				-0.3
3,862,687	+				-1.0
3,862,695	-				+1.6
3,862,697	-				+0.0
3,862,718	-				-2.9
3,862,739	+				+0.2
3,862,739	+				-0.0
3,862,752	-				+0.1
3,862,763	-				+0.8
3,862,767	+				+0.1
3,862,767	+				-0.1
3,862,773	-				-0.1
3,862,775	-				-0.2
3,862,775	-				-0.0
3,862,777	+				+0.4
3,862,777	+				-0.1
3,862,785	-				-0.7
3,862,785	-				+0.2
3,862,786	-				-0.6
3,862,800	+				+0.0
3,862,806	-				+0.3
3,862,806	-				-0.2
3,862,806	-				+0.0
3,862,806	-				+0.0
3,862,806	-				+0.6
3,862,807	-				-1.0
3,862,841	-				-0.5
3,862,866	-				-0.2
3,862,884	+				+1.5
3,862,903	-				+0.4
3,862,955	+				+1.2
3,862,970	-				-1.1
3,862,988	-				+0.0
3,862,990	+				-0.3
3,863,032	+				-0.0
3,863,036	+				+1.0
3,863,062	+				+1.2
3,863,080	-		TX73_017685	0.12	-0.0
3,863,092	-		TX73_017685	0.14	-1.3
3,863,125	+		TX73_017685	0.19	-0.8
3,863,177	+		TX73_017685	0.28	+0.5
3,863,194	+		TX73_017685	0.31	-2.5
3,863,246	+		TX73_017685	0.39	-1.1
3,863,253	+		TX73_017685	0.40	+0.9
3,863,258	+		TX73_017685	0.41	-0.0
3,863,271	+		TX73_017685	0.43	-0.2
3,863,271	+		TX73_017685	0.43	-1.6
3,863,277	+		TX73_017685	0.44	-0.9
3,863,279	-		TX73_017685	0.45	-0.8
3,863,296	+		TX73_017685	0.47	-0.6
3,863,319	-		TX73_017685	0.51	-1.8
3,863,334	+		TX73_017685	0.54	+0.1
3,863,342	-		TX73_017685	0.55	-1.0
3,863,342	-		TX73_017685	0.55	-0.7
3,863,362	+		TX73_017685	0.58	-0.5
3,863,362	+		TX73_017685	0.58	-1.6
3,863,364	+		TX73_017685	0.59	-1.4
3,863,375	-		TX73_017685	0.60	+0.0
3,863,380	-		TX73_017685	0.61	+0.5
3,863,393	+		TX73_017685	0.63	+0.7
3,863,403	-		TX73_017685	0.65	+0.0
3,863,425	-		TX73_017685	0.69	-0.7
3,863,425	-		TX73_017685	0.69	-0.4
3,863,443	+		TX73_017685	0.72	-2.8
3,863,471	+		TX73_017685	0.76	-0.4
3,863,471	+		TX73_017685	0.76	-0.2
3,863,474	-		TX73_017685	0.77	-0.6
3,863,479	-		TX73_017685	0.78	+0.4
3,863,479	-		TX73_017685	0.78	-2.7
3,863,498	-		TX73_017685	0.81	+0.1
3,863,498	-		TX73_017685	0.81	-0.1
3,863,500	-		TX73_017685	0.81	-0.8
3,863,509	-		TX73_017685	0.83	+0.2
3,863,528	+		TX73_017685	0.86	-0.1
3,863,546	+		TX73_017685	0.89	-1.6
3,863,547	+		TX73_017685	0.89	-0.5
3,863,560	-				+0.6