Experiment: PM with succinate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001535 and TX73_001540 are separated by 87 nucleotides TX73_001540 and TX73_001545 are separated by 260 nucleotides
TX73_001535: TX73_001535 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 325,168 to 326,493
_001535
TX73_001540: TX73_001540 - transcription termination factor Rho, at 326,581 to 327,846
_001540
TX73_001545: TX73_001545 - protoporphyrinogen oxidase HemJ, at 328,107 to 328,547
_001545
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 325.595 kb on + strand, within TX73_001535 at 325.598 kb on - strand, within TX73_001535 at 325.599 kb on - strand, within TX73_001535 at 325.625 kb on + strand, within TX73_001535 at 325.625 kb on - strand, within TX73_001535 at 325.634 kb on + strand, within TX73_001535 at 325.636 kb on + strand, within TX73_001535 at 325.636 kb on + strand, within TX73_001535 at 325.644 kb on - strand, within TX73_001535 at 325.658 kb on - strand, within TX73_001535 at 325.658 kb on - strand, within TX73_001535 at 325.658 kb on - strand, within TX73_001535 at 325.676 kb on + strand, within TX73_001535 at 325.701 kb on + strand, within TX73_001535 at 325.714 kb on - strand, within TX73_001535 at 325.728 kb on + strand, within TX73_001535 at 325.728 kb on + strand, within TX73_001535 at 325.728 kb on + strand, within TX73_001535 at 325.736 kb on - strand, within TX73_001535 at 325.739 kb on + strand, within TX73_001535 at 325.764 kb on - strand, within TX73_001535 at 325.784 kb on + strand, within TX73_001535 at 325.784 kb on + strand, within TX73_001535 at 325.789 kb on + strand, within TX73_001535 at 325.792 kb on - strand, within TX73_001535 at 325.797 kb on - strand, within TX73_001535 at 325.801 kb on - strand, within TX73_001535 at 325.802 kb on - strand, within TX73_001535 at 325.802 kb on - strand, within TX73_001535 at 325.829 kb on + strand, within TX73_001535 at 325.851 kb on + strand, within TX73_001535 at 325.851 kb on + strand, within TX73_001535 at 325.852 kb on - strand, within TX73_001535 at 325.857 kb on - strand, within TX73_001535 at 325.859 kb on + strand, within TX73_001535 at 325.859 kb on + strand, within TX73_001535 at 325.863 kb on + strand, within TX73_001535 at 325.864 kb on + strand, within TX73_001535 at 325.867 kb on - strand, within TX73_001535 at 325.867 kb on - strand, within TX73_001535 at 325.872 kb on - strand, within TX73_001535 at 325.873 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.874 kb on + strand, within TX73_001535 at 325.879 kb on + strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.882 kb on - strand, within TX73_001535 at 325.890 kb on + strand, within TX73_001535 at 325.892 kb on + strand, within TX73_001535 at 325.892 kb on - strand, within TX73_001535 at 325.898 kb on - strand, within TX73_001535 at 325.902 kb on + strand, within TX73_001535 at 325.902 kb on + strand, within TX73_001535 at 325.910 kb on - strand, within TX73_001535 at 325.910 kb on - strand, within TX73_001535 at 325.910 kb on - strand, within TX73_001535 at 325.933 kb on - strand, within TX73_001535 at 325.933 kb on - strand, within TX73_001535 at 325.938 kb on - strand, within TX73_001535 at 325.976 kb on + strand, within TX73_001535 at 325.976 kb on + strand, within TX73_001535 at 325.976 kb on + strand, within TX73_001535 at 325.984 kb on - strand, within TX73_001535 at 325.984 kb on - strand, within TX73_001535 at 325.990 kb on - strand, within TX73_001535 at 325.992 kb on + strand, within TX73_001535 at 325.994 kb on - strand, within TX73_001535 at 325.994 kb on - strand, within TX73_001535 at 325.995 kb on - strand, within TX73_001535 at 326.010 kb on - strand, within TX73_001535 at 326.012 kb on + strand, within TX73_001535 at 326.020 kb on - strand, within TX73_001535 at 326.029 kb on + strand, within TX73_001535 at 326.032 kb on + strand, within TX73_001535 at 326.042 kb on + strand, within TX73_001535 at 326.042 kb on + strand, within TX73_001535 at 326.045 kb on - strand, within TX73_001535 at 326.050 kb on - strand, within TX73_001535 at 326.058 kb on + strand, within TX73_001535 at 326.066 kb on - strand, within TX73_001535 at 326.075 kb on + strand, within TX73_001535 at 326.075 kb on + strand, within TX73_001535 at 326.087 kb on + strand, within TX73_001535 at 326.092 kb on + strand, within TX73_001535 at 326.100 kb on - strand, within TX73_001535 at 326.101 kb on + strand, within TX73_001535 at 326.107 kb on + strand, within TX73_001535 at 326.108 kb on - strand, within TX73_001535 at 326.109 kb on - strand, within TX73_001535 at 326.109 kb on - strand, within TX73_001535 at 326.109 kb on - strand, within TX73_001535 at 326.124 kb on + strand, within TX73_001535 at 326.124 kb on + strand, within TX73_001535 at 326.125 kb on + strand, within TX73_001535 at 326.129 kb on + strand, within TX73_001535 at 326.132 kb on - strand, within TX73_001535 at 326.132 kb on - strand, within TX73_001535 at 326.154 kb on + strand, within TX73_001535 at 326.154 kb on + strand, within TX73_001535 at 326.154 kb on + strand, within TX73_001535 at 326.162 kb on - strand, within TX73_001535 at 326.188 kb on + strand, within TX73_001535 at 326.203 kb on - strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.204 kb on + strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.212 kb on - strand, within TX73_001535 at 326.223 kb on + strand, within TX73_001535 at 326.228 kb on - strand, within TX73_001535 at 326.231 kb on + strand, within TX73_001535 at 326.233 kb on + strand, within TX73_001535 at 326.241 kb on - strand, within TX73_001535 at 326.244 kb on - strand, within TX73_001535 at 326.260 kb on + strand, within TX73_001535 at 326.271 kb on + strand, within TX73_001535 at 326.293 kb on + strand, within TX73_001535 at 326.301 kb on - strand, within TX73_001535 at 326.301 kb on - strand, within TX73_001535 at 326.308 kb on - strand, within TX73_001535 at 326.332 kb on + strand, within TX73_001535 at 326.337 kb on + strand, within TX73_001535 at 326.340 kb on + strand, within TX73_001535 at 326.340 kb on + strand, within TX73_001535 at 326.340 kb on + strand, within TX73_001535 at 326.340 kb on - strand, within TX73_001535 at 326.340 kb on - strand, within TX73_001535 at 326.343 kb on - strand, within TX73_001535 at 326.343 kb on - strand, within TX73_001535 at 326.347 kb on + strand, within TX73_001535 at 326.348 kb on - strand, within TX73_001535 at 326.348 kb on - strand, within TX73_001535 at 326.351 kb on + strand, within TX73_001535 at 326.370 kb on + strand at 326.378 kb on - strand at 326.380 kb on + strand at 326.380 kb on + strand at 326.380 kb on + strand at 326.388 kb on - strand at 326.393 kb on - strand at 326.395 kb on + strand at 326.403 kb on - strand at 326.403 kb on - strand at 326.403 kb on - strand at 326.435 kb on - strand at 326.455 kb on + strand at 326.464 kb on + strand at 326.464 kb on + strand at 326.468 kb on + strand at 326.471 kb on - strand at 326.472 kb on - strand at 326.472 kb on - strand at 326.472 kb on - strand at 326.476 kb on - strand at 326.481 kb on - strand at 326.483 kb on + strand at 326.493 kb on - strand at 326.495 kb on + strand at 326.500 kb on + strand at 326.505 kb on + strand at 326.508 kb on - strand at 326.511 kb on + strand at 326.516 kb on + strand at 326.524 kb on - strand at 326.524 kb on - strand at 326.530 kb on + strand at 326.549 kb on - strand at 326.554 kb on + strand at 326.556 kb on + strand at 326.579 kb on + strand at 326.586 kb on - strand at 326.586 kb on - strand at 327.848 kb on + strand at 327.848 kb on + strand at 327.849 kb on + strand at 327.854 kb on + strand at 327.854 kb on + strand at 327.856 kb on - strand at 327.857 kb on - strand at 327.857 kb on - strand at 327.857 kb on - strand at 327.857 kb on - strand at 327.868 kb on + strand at 327.908 kb on + strand at 327.911 kb on + strand at 327.923 kb on + strand at 327.923 kb on + strand at 327.924 kb on - strand at 327.926 kb on - strand at 327.931 kb on + strand at 327.931 kb on + strand at 327.931 kb on + strand at 327.932 kb on - strand at 327.932 kb on - strand at 327.936 kb on + strand at 327.939 kb on - strand at 327.939 kb on - strand at 327.941 kb on + strand at 327.941 kb on + strand at 327.941 kb on + strand at 327.941 kb on + strand at 327.941 kb on + strand at 327.941 kb on + strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.949 kb on - strand at 327.956 kb on + strand at 327.957 kb on + strand at 327.957 kb on + strand at 327.966 kb on - strand at 327.967 kb on + strand at 327.974 kb on - strand at 328.026 kb on + strand at 328.026 kb on + strand at 328.026 kb on + strand at 328.026 kb on + strand at 328.034 kb on - strand at 328.034 kb on - strand at 328.091 kb on + strand at 328.097 kb on - strand at 328.099 kb on - strand at 328.539 kb on + strand at 328.559 kb on - strand at 328.561 kb on + strand at 328.561 kb on - strand at 328.561 kb on - strand at 328.561 kb on - strand at 328.561 kb on - strand at 328.564 kb on - strand at 328.564 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.574 kb on - strand at 328.574 kb on - strand at 328.574 kb on - strand at 328.574 kb on - strand at 328.574 kb on - strand at 328.576 kb on + strand at 328.576 kb on + strand at 328.578 kb on + strand at 328.578 kb on + strand at 328.579 kb on + strand at 328.584 kb on - strand at 328.594 kb on + strand at 328.595 kb on - strand at 328.595 kb on - strand at 328.595 kb on - strand at 328.600 kb on + strand at 328.608 kb on - strand at 328.608 kb on - strand at 328.617 kb on + strand at 328.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark remove 325,595 + TX73_001535 0.32 -2.6 325,598 - TX73_001535 0.32 +0.8 325,599 - TX73_001535 0.33 -0.5 325,625 + TX73_001535 0.34 +0.3 325,625 - TX73_001535 0.34 -0.4 325,634 + TX73_001535 0.35 +0.3 325,636 + TX73_001535 0.35 -0.4 325,636 + TX73_001535 0.35 -0.6 325,644 - TX73_001535 0.36 -0.5 325,658 - TX73_001535 0.37 -0.0 325,658 - TX73_001535 0.37 -0.3 325,658 - TX73_001535 0.37 +0.8 325,676 + TX73_001535 0.38 -0.1 325,701 + TX73_001535 0.40 -1.2 325,714 - TX73_001535 0.41 +0.6 325,728 + TX73_001535 0.42 -0.4 325,728 + TX73_001535 0.42 -0.5 325,728 + TX73_001535 0.42 -1.0 325,736 - TX73_001535 0.43 -0.5 325,739 + TX73_001535 0.43 -0.0 325,764 - TX73_001535 0.45 -0.4 325,784 + TX73_001535 0.46 +0.4 325,784 + TX73_001535 0.46 -2.3 325,789 + TX73_001535 0.47 -1.1 325,792 - TX73_001535 0.47 -1.7 325,797 - TX73_001535 0.47 +0.2 325,801 - TX73_001535 0.48 -0.2 325,802 - TX73_001535 0.48 -0.7 325,802 - TX73_001535 0.48 +0.1 325,829 + TX73_001535 0.50 +0.9 325,851 + TX73_001535 0.52 -0.8 325,851 + TX73_001535 0.52 -0.5 325,852 - TX73_001535 0.52 -0.2 325,857 - TX73_001535 0.52 +1.1 325,859 + TX73_001535 0.52 -1.4 325,859 + TX73_001535 0.52 -0.6 325,863 + TX73_001535 0.52 -1.1 325,864 + TX73_001535 0.52 -0.5 325,867 - TX73_001535 0.53 -0.3 325,867 - TX73_001535 0.53 -1.2 325,872 - TX73_001535 0.53 +0.0 325,873 + TX73_001535 0.53 -0.6 325,874 + TX73_001535 0.53 -0.6 325,874 + TX73_001535 0.53 -1.4 325,874 + TX73_001535 0.53 -0.2 325,874 + TX73_001535 0.53 +0.5 325,874 + TX73_001535 0.53 -2.8 325,874 + TX73_001535 0.53 -1.3 325,874 + TX73_001535 0.53 -2.0 325,874 + TX73_001535 0.53 -0.8 325,874 + TX73_001535 0.53 -1.3 325,874 + TX73_001535 0.53 -1.1 325,874 + TX73_001535 0.53 +1.5 325,879 + TX73_001535 0.54 -1.1 325,882 - TX73_001535 0.54 -0.2 325,882 - TX73_001535 0.54 -0.1 325,882 - TX73_001535 0.54 -0.4 325,882 - TX73_001535 0.54 -0.4 325,882 - TX73_001535 0.54 -0.1 325,882 - TX73_001535 0.54 +0.5 325,882 - TX73_001535 0.54 -1.0 325,882 - TX73_001535 0.54 -1.8 325,890 + TX73_001535 0.54 -1.2 325,892 + TX73_001535 0.55 -0.5 325,892 - TX73_001535 0.55 +0.4 325,898 - TX73_001535 0.55 +0.6 325,902 + TX73_001535 0.55 -0.5 325,902 + TX73_001535 0.55 +0.5 325,910 - TX73_001535 0.56 -1.5 325,910 - TX73_001535 0.56 -2.9 325,910 - TX73_001535 0.56 -0.3 325,933 - TX73_001535 0.58 -0.6 325,933 - TX73_001535 0.58 -0.2 325,938 - TX73_001535 0.58 -0.7 325,976 + TX73_001535 0.61 -1.6 325,976 + TX73_001535 0.61 -1.4 325,976 + TX73_001535 0.61 -2.2 325,984 - TX73_001535 0.62 -0.3 325,984 - TX73_001535 0.62 -0.2 325,990 - TX73_001535 0.62 -1.3 325,992 + TX73_001535 0.62 -1.5 325,994 - TX73_001535 0.62 -0.9 325,994 - TX73_001535 0.62 -0.6 325,995 - TX73_001535 0.62 -0.3 326,010 - TX73_001535 0.63 -1.0 326,012 + TX73_001535 0.64 -0.6 326,020 - TX73_001535 0.64 -0.1 326,029 + TX73_001535 0.65 -2.8 326,032 + TX73_001535 0.65 -0.6 326,042 + TX73_001535 0.66 -1.1 326,042 + TX73_001535 0.66 -0.4 326,045 - TX73_001535 0.66 +0.2 326,050 - TX73_001535 0.67 -2.3 326,058 + TX73_001535 0.67 -0.8 326,066 - TX73_001535 0.68 -0.5 326,075 + TX73_001535 0.68 -2.1 326,075 + TX73_001535 0.68 +0.2 326,087 + TX73_001535 0.69 -0.2 326,092 + TX73_001535 0.70 +0.8 326,100 - TX73_001535 0.70 -1.3 326,101 + TX73_001535 0.70 -0.2 326,107 + TX73_001535 0.71 -0.9 326,108 - TX73_001535 0.71 -1.4 326,109 - TX73_001535 0.71 -1.6 326,109 - TX73_001535 0.71 +0.8 326,109 - TX73_001535 0.71 -0.2 326,124 + TX73_001535 0.72 -2.1 326,124 + TX73_001535 0.72 -1.6 326,125 + TX73_001535 0.72 +0.1 326,129 + TX73_001535 0.72 +0.7 326,132 - TX73_001535 0.73 -0.9 326,132 - TX73_001535 0.73 -0.4 326,154 + TX73_001535 0.74 -1.9 326,154 + TX73_001535 0.74 -0.0 326,154 + TX73_001535 0.74 +0.1 326,162 - TX73_001535 0.75 +0.0 326,188 + TX73_001535 0.77 -1.5 326,203 - TX73_001535 0.78 +0.3 326,204 + TX73_001535 0.78 -1.2 326,204 + TX73_001535 0.78 -0.4 326,204 + TX73_001535 0.78 -0.1 326,204 + TX73_001535 0.78 +0.2 326,204 + TX73_001535 0.78 +0.9 326,204 + TX73_001535 0.78 -0.3 326,212 - TX73_001535 0.79 +0.1 326,212 - TX73_001535 0.79 -0.8 326,212 - TX73_001535 0.79 -0.2 326,212 - TX73_001535 0.79 +0.5 326,212 - TX73_001535 0.79 -1.1 326,212 - TX73_001535 0.79 -2.8 326,223 + TX73_001535 0.80 -0.2 326,228 - TX73_001535 0.80 +0.3 326,231 + TX73_001535 0.80 -1.6 326,233 + TX73_001535 0.80 -2.0 326,241 - TX73_001535 0.81 -0.0 326,244 - TX73_001535 0.81 +0.1 326,260 + TX73_001535 0.82 +0.2 326,271 + TX73_001535 0.83 +0.4 326,293 + TX73_001535 0.85 -0.9 326,301 - TX73_001535 0.85 +0.2 326,301 - TX73_001535 0.85 -0.2 326,308 - TX73_001535 0.86 -1.5 326,332 + TX73_001535 0.88 -0.5 326,337 + TX73_001535 0.88 +0.3 326,340 + TX73_001535 0.88 +1.2 326,340 + TX73_001535 0.88 +0.2 326,340 + TX73_001535 0.88 -0.8 326,340 - TX73_001535 0.88 +0.4 326,340 - TX73_001535 0.88 -0.0 326,343 - TX73_001535 0.89 -0.0 326,343 - TX73_001535 0.89 -0.4 326,347 + TX73_001535 0.89 -0.1 326,348 - TX73_001535 0.89 -2.2 326,348 - TX73_001535 0.89 -0.9 326,351 + TX73_001535 0.89 -1.5 326,370 + -1.1 326,378 - -0.2 326,380 + +0.5 326,380 + -0.0 326,380 + -0.4 326,388 - +0.2 326,393 - -0.1 326,395 + +0.8 326,403 - -1.0 326,403 - +0.4 326,403 - -1.3 326,435 - -0.9 326,455 + -0.6 326,464 + -1.3 326,464 + -1.3 326,468 + -2.4 326,471 - -0.1 326,472 - -1.3 326,472 - -1.1 326,472 - -0.7 326,476 - -0.8 326,481 - -0.7 326,483 + +0.5 326,493 - -1.2 326,495 + -0.4 326,500 + +0.1 326,505 + +0.4 326,508 - -0.4 326,511 + +1.0 326,516 + +0.6 326,524 - -0.1 326,524 - -0.9 326,530 + -0.4 326,549 - +1.2 326,554 + -0.2 326,556 + +0.1 326,579 + +0.8 326,586 - -0.8 326,586 - +0.9 327,848 + +0.2 327,848 + +0.7 327,849 + -0.1 327,854 + +0.8 327,854 + +1.7 327,856 - +0.5 327,857 - +0.5 327,857 - -0.3 327,857 - -0.6 327,857 - +0.1 327,868 + -0.6 327,908 + +1.2 327,911 + -0.2 327,923 + +0.2 327,923 + +0.4 327,924 - -0.7 327,926 - -0.8 327,931 + +0.4 327,931 + +0.6 327,931 + +0.4 327,932 - +0.5 327,932 - -0.2 327,936 + +2.1 327,939 - +0.1 327,939 - -0.2 327,941 + +0.3 327,941 + -0.1 327,941 + +0.6 327,941 + -0.7 327,941 + +0.5 327,941 + +0.7 327,949 - -0.5 327,949 - +0.3 327,949 - +0.4 327,949 - -0.7 327,949 - -0.1 327,949 - -0.4 327,949 - -0.2 327,956 + +0.2 327,957 + +0.3 327,957 + +0.5 327,966 - +0.6 327,967 + -0.3 327,974 - -0.1 328,026 + +0.3 328,026 + +0.5 328,026 + +0.6 328,026 + +0.3 328,034 - +1.2 328,034 - -0.1 328,091 + -0.3 328,097 - +0.1 328,099 - +0.2 328,539 + +1.2 328,559 - -1.4 328,561 + +0.3 328,561 - +0.9 328,561 - +0.2 328,561 - +1.6 328,561 - -0.1 328,564 - +0.2 328,564 - +0.5 328,569 - -0.1 328,569 - -1.0 328,574 - +0.3 328,574 - -0.1 328,574 - +0.3 328,574 - -0.1 328,574 - -1.3 328,576 + -0.5 328,576 + +2.1 328,578 + -0.4 328,578 + +0.2 328,579 + +0.5 328,584 - +0.6 328,594 + +0.0 328,595 - +0.0 328,595 - +0.4 328,595 - +0.4 328,600 + -0.0 328,608 - -1.2 328,608 - -0.5 328,617 + -1.8 328,686 - -0.9
Or see this region's nucleotide sequence