Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000310

Experiment: PM with succinate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000305 and TX73_000310 are separated by 178 nucleotidesTX73_000310 and TX73_000315 are separated by 70 nucleotidesTX73_000315 and TX73_000320 are separated by 140 nucleotides TX73_000305: TX73_000305 - CaiB/BaiF CoA-transferase family protein, at 65,126 to 66,331 _000305 TX73_000310: TX73_000310 - tRNA-Ala, at 66,510 to 66,585 _000310 TX73_000315: TX73_000315 - TIGR02300 family protein, at 66,656 to 67,057 _000315 TX73_000320: TX73_000320 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 67,198 to 68,535 _000320 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1at 65.529 kb on - strand, within TX73_000305at 65.543 kb on - strand, within TX73_000305at 65.546 kb on - strand, within TX73_000305at 65.546 kb on - strand, within TX73_000305at 65.548 kb on + strand, within TX73_000305at 65.548 kb on + strand, within TX73_000305at 65.572 kb on - strand, within TX73_000305at 65.579 kb on + strand, within TX73_000305at 65.580 kb on + strand, within TX73_000305at 65.580 kb on + strand, within TX73_000305at 65.580 kb on + strand, within TX73_000305at 65.585 kb on + strand, within TX73_000305at 65.585 kb on + strand, within TX73_000305at 65.588 kb on - strand, within TX73_000305at 65.625 kb on + strand, within TX73_000305at 65.628 kb on - strand, within TX73_000305at 65.638 kb on + strand, within TX73_000305at 65.645 kb on + strand, within TX73_000305at 65.646 kb on - strand, within TX73_000305at 65.683 kb on - strand, within TX73_000305at 65.712 kb on + strand, within TX73_000305at 65.712 kb on + strand, within TX73_000305at 65.712 kb on + strand, within TX73_000305at 65.720 kb on - strand, within TX73_000305at 65.720 kb on - strand, within TX73_000305at 65.720 kb on - strand, within TX73_000305at 65.721 kb on + strand, within TX73_000305at 65.730 kb on + strand, within TX73_000305at 65.737 kb on - strand, within TX73_000305at 65.744 kb on - strand, within TX73_000305at 65.762 kb on - strand, within TX73_000305at 65.763 kb on - strand, within TX73_000305at 65.764 kb on + strand, within TX73_000305at 65.779 kb on + strand, within TX73_000305at 65.782 kb on - strand, within TX73_000305at 65.790 kb on + strand, within TX73_000305at 65.790 kb on + strand, within TX73_000305at 65.794 kb on + strand, within TX73_000305at 65.798 kb on - strand, within TX73_000305at 65.802 kb on - strand, within TX73_000305at 65.821 kb on + strand, within TX73_000305at 65.825 kb on - strand, within TX73_000305at 65.849 kb on - strand, within TX73_000305at 65.851 kb on + strand, within TX73_000305at 65.907 kb on - strand, within TX73_000305at 65.996 kb on + strand, within TX73_000305at 66.024 kb on + strand, within TX73_000305at 66.053 kb on - strand, within TX73_000305at 66.063 kb on + strand, within TX73_000305at 66.063 kb on + strand, within TX73_000305at 66.064 kb on + strand, within TX73_000305at 66.073 kb on + strand, within TX73_000305at 66.090 kb on + strand, within TX73_000305at 66.100 kb on + strand, within TX73_000305at 66.103 kb on - strand, within TX73_000305at 66.110 kb on + strand, within TX73_000305at 66.159 kb on + strand, within TX73_000305at 66.161 kb on + strand, within TX73_000305at 66.165 kb on - strand, within TX73_000305at 66.169 kb on - strand, within TX73_000305at 66.172 kb on + strand, within TX73_000305at 66.175 kb on - strand, within TX73_000305at 66.182 kb on - strand, within TX73_000305at 66.187 kb on + strand, within TX73_000305at 66.187 kb on - strand, within TX73_000305at 66.212 kb on - strandat 66.228 kb on - strandat 66.249 kb on + strandat 66.257 kb on - strandat 66.257 kb on - strandat 66.326 kb on + strandat 66.326 kb on + strandat 66.326 kb on + strandat 66.326 kb on + strandat 66.327 kb on + strandat 66.327 kb on + strandat 66.327 kb on - strandat 66.334 kb on - strandat 66.334 kb on - strandat 66.350 kb on + strandat 66.358 kb on - strandat 66.358 kb on - strandat 66.368 kb on - strandat 66.378 kb on + strandat 66.384 kb on - strandat 66.416 kb on - strandat 66.419 kb on + strandat 66.429 kb on + strandat 66.437 kb on - strandat 66.437 kb on - strandat 66.437 kb on - strandat 66.439 kb on + strandat 66.447 kb on + strandat 66.447 kb on + strandat 66.447 kb on + strandat 66.447 kb on + strandat 66.447 kb on - strandat 66.447 kb on - strandat 66.447 kb on - strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.460 kb on - strandat 66.460 kb on - strandat 66.465 kb on + strandat 66.470 kb on + strandat 66.470 kb on + strandat 66.472 kb on + strandat 66.500 kb on + strandat 66.502 kb on + strandat 66.519 kb on - strand, within TX73_000310at 66.591 kb on - strandat 66.591 kb on - strandat 66.591 kb on - strandat 66.591 kb on - strandat 66.591 kb on - strandat 66.595 kb on - strandat 66.648 kb on - strandat 66.654 kb on + strandat 67.111 kb on - strandat 67.113 kb on + strandat 67.120 kb on + strandat 67.126 kb on - strandat 67.140 kb on + strandat 67.142 kb on - strandat 67.179 kb on + strandat 67.179 kb on + strandat 67.179 kb on + strandat 67.187 kb on - strandat 67.189 kb on + strandat 67.207 kb on - strandat 67.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark
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65,529 - TX73_000305 0.33 +0.5
65,543 - TX73_000305 0.35 +0.8
65,546 - TX73_000305 0.35 -1.3
65,546 - TX73_000305 0.35 +0.5
65,548 + TX73_000305 0.35 +0.7
65,548 + TX73_000305 0.35 -0.4
65,572 - TX73_000305 0.37 -0.4
65,579 + TX73_000305 0.38 +0.5
65,580 + TX73_000305 0.38 +0.4
65,580 + TX73_000305 0.38 +0.4
65,580 + TX73_000305 0.38 +0.4
65,585 + TX73_000305 0.38 -0.2
65,585 + TX73_000305 0.38 -0.1
65,588 - TX73_000305 0.38 +0.5
65,625 + TX73_000305 0.41 +0.1
65,628 - TX73_000305 0.42 +0.4
65,638 + TX73_000305 0.42 -0.1
65,645 + TX73_000305 0.43 +1.1
65,646 - TX73_000305 0.43 -0.3
65,683 - TX73_000305 0.46 +0.1
65,712 + TX73_000305 0.49 -0.3
65,712 + TX73_000305 0.49 +0.7
65,712 + TX73_000305 0.49 -0.0
65,720 - TX73_000305 0.49 -0.1
65,720 - TX73_000305 0.49 -0.7
65,720 - TX73_000305 0.49 +0.2
65,721 + TX73_000305 0.49 +0.1
65,730 + TX73_000305 0.50 -0.1
65,737 - TX73_000305 0.51 +0.3
65,744 - TX73_000305 0.51 -1.3
65,762 - TX73_000305 0.53 -0.3
65,763 - TX73_000305 0.53 -0.2
65,764 + TX73_000305 0.53 +0.6
65,779 + TX73_000305 0.54 -0.9
65,782 - TX73_000305 0.54 +0.6
65,790 + TX73_000305 0.55 -1.3
65,790 + TX73_000305 0.55 -0.6
65,794 + TX73_000305 0.55 -1.0
65,798 - TX73_000305 0.56 -1.3
65,802 - TX73_000305 0.56 -0.3
65,821 + TX73_000305 0.58 -1.4
65,825 - TX73_000305 0.58 -1.0
65,849 - TX73_000305 0.60 +1.2
65,851 + TX73_000305 0.60 -0.6
65,907 - TX73_000305 0.65 -1.4
65,996 + TX73_000305 0.72 -0.7
66,024 + TX73_000305 0.74 -0.4
66,053 - TX73_000305 0.77 +1.0
66,063 + TX73_000305 0.78 +0.3
66,063 + TX73_000305 0.78 -0.1
66,064 + TX73_000305 0.78 +0.1
66,073 + TX73_000305 0.79 +0.4
66,090 + TX73_000305 0.80 +0.6
66,100 + TX73_000305 0.81 +0.1
66,103 - TX73_000305 0.81 +0.3
66,110 + TX73_000305 0.82 -0.2
66,159 + TX73_000305 0.86 -0.4
66,161 + TX73_000305 0.86 -0.1
66,165 - TX73_000305 0.86 +0.6
66,169 - TX73_000305 0.86 -0.6
66,172 + TX73_000305 0.87 +0.5
66,175 - TX73_000305 0.87 +0.6
66,182 - TX73_000305 0.88 +0.8
66,187 + TX73_000305 0.88 +0.6
66,187 - TX73_000305 0.88 +0.8
66,212 - -0.3
66,228 - -1.3
66,249 + +0.7
66,257 - +0.4
66,257 - -1.4
66,326 + +0.2
66,326 + -0.3
66,326 + -0.6
66,326 + +0.2
66,327 + -1.1
66,327 + -0.6
66,327 - +0.2
66,334 - +0.5
66,334 - -0.9
66,350 + -0.6
66,358 - +0.2
66,358 - -1.5
66,368 - -1.1
66,378 + +0.0
66,384 - +0.4
66,416 - +1.4
66,419 + +1.5
66,429 + +1.5
66,437 - -0.0
66,437 - -0.2
66,437 - -2.3
66,439 + +1.1
66,447 + +0.3
66,447 + -2.2
66,447 + -0.5
66,447 + +0.7
66,447 - +0.2
66,447 - +1.4
66,447 - +0.2
66,452 + +0.2
66,452 + -0.5
66,452 + -1.4
66,460 - +0.0
66,460 - -0.0
66,465 + +0.3
66,470 + -1.6
66,470 + -0.3
66,472 + -0.4
66,500 + +0.1
66,502 + -0.6
66,519 - TX73_000310 0.12 -0.5
66,591 - -0.1
66,591 - -0.4
66,591 - -1.0
66,591 - -0.4
66,591 - +0.4
66,595 - +0.6
66,648 - -0.0
66,654 + +0.1
67,111 - -1.0
67,113 + +0.1
67,120 + +0.5
67,126 - -0.1
67,140 + +0.8
67,142 - +0.7
67,179 + +0.8
67,179 + +0.4
67,179 + +0.3
67,187 - +0.5
67,189 + +0.2
67,207 - -0.2
67,223 - +0.5

Or see this region's nucleotide sequence