Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020010

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
4,362,658	+				-1.3
4,362,658	+				+0.6
4,362,658	+				-0.7
4,362,658	+				-0.1
4,362,658	+				+0.4
4,362,666	-				+0.2
4,362,699	-				-0.4
4,362,708	+				-0.2
4,362,740	-				+0.5
4,362,761	+				+0.4
4,362,761	+				+0.0
4,362,761	+				+0.2
4,362,761	+				-0.2
4,362,761	+				-2.3
4,362,769	-				-0.2
4,362,771	+				+0.7
4,362,787	+				-1.2
4,362,787	+				+0.2
4,362,787	+				-0.1
4,362,792	+				+0.5
4,362,795	-				-0.4
4,362,804	+				-0.6
4,362,806	+				-0.4
4,362,806	+				-0.1
4,362,806	+				+0.0
4,362,806	+				+0.5
4,362,814	-				-0.3
4,362,814	-				+0.7
4,362,859	+				+0.1
4,362,859	+				-0.8
4,362,859	+				-0.8
4,362,859	+				-0.8
4,362,859	+				-1.1
4,362,859	+				-0.3
4,362,859	+				-0.4
4,362,859	+				-0.3
4,362,859	+				+0.6
4,362,859	+				-0.9
4,362,859	+				-1.2
4,362,859	+				-0.8
4,362,859	+				-0.7
4,362,859	+				+0.3
4,362,859	+				-0.1
4,362,867	-				-0.1
4,362,867	-				-0.1
4,362,867	-				-0.2
4,362,867	-				-0.1
4,362,867	-				-0.1
4,362,867	-				-0.7
4,362,867	-				-0.0
4,362,881	+				+0.1
4,362,886	+				+0.5
4,362,886	+				+0.1
4,362,890	-				+0.5
4,362,894	-				+0.4
4,362,894	-				+0.0
4,362,897	+				-0.3
4,362,897	+				-0.2
4,362,905	-				+0.3
4,362,905	-				-0.2
4,362,905	-				-1.3
4,362,920	-				-0.7
4,362,924	-				-0.0
4,362,946	+				+0.5
4,362,946	+				-0.0
4,362,946	+				-0.0
4,362,946	+				+0.9
4,362,952	-				-0.5
4,362,953	-				+0.1
4,362,953	-				-0.2
4,362,954	-				+0.2
4,362,987	-				-0.1
4,362,999	-				+0.5
4,363,020	-		TX73_020005	0.14	+0.1
4,363,027	+		TX73_020005	0.16	-0.4
4,363,032	+		TX73_020005	0.17	-0.0
4,363,035	-		TX73_020005	0.18	+0.3
4,363,035	-		TX73_020005	0.18	-0.7
4,363,035	-		TX73_020005	0.18	-0.7
4,363,074	-		TX73_020005	0.28	-0.5
4,363,084	+		TX73_020005	0.30	+0.4
4,363,084	+		TX73_020005	0.30	+0.1
4,363,084	+		TX73_020005	0.30	-1.6
4,363,146	-		TX73_020005	0.46	-0.4
4,363,152	+		TX73_020005	0.48	-0.6
4,363,154	-		TX73_020005	0.48	-0.9
4,363,159	+		TX73_020005	0.50	-0.1
4,363,160	+		TX73_020005	0.50	-0.8
4,363,168	-		TX73_020005	0.52	+0.8
4,363,173	-		TX73_020005	0.53	+0.7
4,363,196	-		TX73_020005	0.59	+0.2
4,363,219	+		TX73_020005	0.65	-0.0
4,363,219	+		TX73_020005	0.65	-0.7
4,363,227	-		TX73_020005	0.67	-0.4
4,363,232	-		TX73_020005	0.68	-0.2
4,363,234	-		TX73_020005	0.69	-0.1
4,363,234	-		TX73_020005	0.69	+0.3
4,363,236	+		TX73_020005	0.70	-0.8
4,363,244	-		TX73_020005	0.72	-0.6
4,363,263	-		TX73_020005	0.76	-0.3
4,363,279	-		TX73_020005	0.81	-0.5
4,363,287	-		TX73_020005	0.83	-0.3
4,363,290	+		TX73_020005	0.83	+0.1
4,363,330	+				+1.0
4,363,330	+				+0.7
4,363,334	-				+0.4
4,363,338	-				-0.5
4,363,338	-				-0.2
4,363,345	-				-0.8
4,363,362	+				+0.8
4,363,367	+				+0.1
4,363,370	-				+0.1
4,363,372	+				-0.6
4,363,372	+				-0.3
4,363,372	+				+0.5
4,363,372	+				+0.2
4,363,372	+				-0.7
4,363,380	-				-1.0
4,363,380	-				-0.2
4,363,380	-				-0.3
4,363,382	+				-1.0
4,363,549	-				-0.7
4,363,567	-				-0.3
4,363,586	+				-0.3
4,363,586	+				+0.2
4,363,623	+				-1.6
4,363,648	-				-0.5
4,363,652	+				-0.3
4,363,653	+				-1.5
4,363,653	-				-0.1
4,363,653	-				-0.6
4,363,653	-				-1.0
4,363,653	-				-0.6
4,363,661	-		TX73_020010	0.10	-0.4
4,363,674	+		TX73_020010	0.19	-0.8
4,363,684	+		TX73_020010	0.26	-1.6
4,363,684	-		TX73_020010	0.26	+0.1
4,363,694	+		TX73_020010	0.33	-0.1
4,363,694	+		TX73_020010	0.33	-0.5
4,363,694	+		TX73_020010	0.33	-0.5
4,363,697	-		TX73_020010	0.35	-1.0
4,363,697	-		TX73_020010	0.35	-0.8
4,363,699	+		TX73_020010	0.37	-0.3
4,363,702	-		TX73_020010	0.39	-0.6
4,363,702	-		TX73_020010	0.39	-1.6
4,363,702	-		TX73_020010	0.39	-0.9
4,363,707	-		TX73_020010	0.43	-0.8
4,363,712	+		TX73_020010	0.46	-1.0
4,363,712	+		TX73_020010	0.46	-0.9
4,363,717	-		TX73_020010	0.50	-0.8
4,363,720	-		TX73_020010	0.52	+0.0
4,363,806	-				-1.1
4,363,813	+				+0.4
4,363,813	+				+0.8
4,363,819	-				-0.1
4,363,819	-				+1.4
4,363,821	-				-0.3
4,363,821	-				+1.7
4,363,821	-				-0.9
4,363,821	-				+0.0
4,363,828	+				-0.2
4,363,831	-				+1.5
4,363,836	-				-0.8
4,363,836	-				+0.5
4,363,855	-				-0.0
4,363,879	+				+0.1
4,363,887	-				-0.3
4,363,892	-				-0.2
4,363,903	+				-0.2
4,363,908	+				-0.3
4,363,911	-				+0.7
4,363,916	-				+0.2
4,363,923	-				-0.1
4,363,924	+				-0.9
4,363,991	-		TX73_020015	0.19	+0.2
4,363,996	-		TX73_020015	0.20	-0.7
4,364,002	+		TX73_020015	0.21	-1.2
4,364,010	-		TX73_020015	0.22	-0.6
4,364,015	+		TX73_020015	0.23	+0.3
4,364,015	+		TX73_020015	0.23	-0.5
4,364,025	+		TX73_020015	0.24	+0.5
4,364,028	-		TX73_020015	0.25	-0.6
4,364,028	-		TX73_020015	0.25	+0.4
4,364,164	+		TX73_020015	0.45	+0.3
4,364,181	-		TX73_020015	0.48	-0.9
4,364,181	-		TX73_020015	0.48	+0.2
4,364,183	+		TX73_020015	0.48	-0.2
4,364,191	-		TX73_020015	0.49	+0.0
4,364,191	-		TX73_020015	0.49	-0.9
4,364,205	+		TX73_020015	0.51	-0.3
4,364,213	-		TX73_020015	0.53	-0.3
4,364,244	-		TX73_020015	0.57	+0.6
4,364,244	-		TX73_020015	0.57	+0.1
4,364,248	+		TX73_020015	0.58	-0.3
4,364,253	+		TX73_020015	0.59	-0.0
4,364,255	+		TX73_020015	0.59	-2.9
4,364,263	-		TX73_020015	0.60	-0.1
4,364,263	-		TX73_020015	0.60	+0.9
4,364,296	-		TX73_020015	0.65	-0.4
4,364,313	+		TX73_020015	0.68	+1.0
4,364,347	+		TX73_020015	0.73	-0.4
4,364,347	+		TX73_020015	0.73	+0.2
4,364,347	+		TX73_020015	0.73	-0.3
4,364,347	+		TX73_020015	0.73	+0.4
4,364,347	+		TX73_020015	0.73	-0.5
4,364,347	+		TX73_020015	0.73	-0.2
4,364,347	+		TX73_020015	0.73	+0.7
4,364,347	+		TX73_020015	0.73	+0.5
4,364,347	+		TX73_020015	0.73	+0.7
4,364,352	+		TX73_020015	0.73	+0.0
4,364,355	-		TX73_020015	0.74	-1.4
4,364,355	-		TX73_020015	0.74	-1.8
4,364,355	-		TX73_020015	0.74	+0.6
4,364,355	-		TX73_020015	0.74	-0.0
4,364,355	-		TX73_020015	0.74	-0.0
4,364,357	+		TX73_020015	0.74	-0.9
4,364,357	+		TX73_020015	0.74	-1.2
4,364,357	+		TX73_020015	0.74	-0.2
4,364,360	-		TX73_020015	0.75	+0.5
4,364,365	-		TX73_020015	0.75	-0.6
4,364,365	-		TX73_020015	0.75	+0.1
4,364,375	+		TX73_020015	0.77	-1.0
4,364,390	+		TX73_020015	0.79	+0.5
4,364,393	-		TX73_020015	0.80	+0.1
4,364,399	+		TX73_020015	0.80	+0.6
4,364,402	-		TX73_020015	0.81	+0.0
4,364,417	-		TX73_020015	0.83	-0.3
4,364,444	-		TX73_020015	0.87	+0.6
4,364,451	+		TX73_020015	0.88	-2.1
4,364,459	+		TX73_020015	0.89	-0.1
4,364,469	+				-0.5
4,364,474	+				-0.1
4,364,474	+				-1.9
4,364,474	+				-0.8
4,364,474	+				+0.4
4,364,475	+				+0.1
4,364,482	-				-0.2
4,364,482	-				-0.1
4,364,506	+				-0.4
4,364,506	+				-0.7
4,364,508	-				+0.0
4,364,526	+				+1.0
4,364,568	-				+0.2
4,364,651	-				-0.2
4,364,661	-				+0.4
4,364,672	-				+0.7
4,364,672	-				-0.3
4,364,694	-				-0.3
4,364,711	+				-0.7
4,364,717	+		TX73_020020	0.10	+1.0
4,364,717	+		TX73_020020	0.10	-0.2
4,364,725	-		TX73_020020	0.13	+0.1
4,364,733	+		TX73_020020	0.16	-2.0
4,364,741	-		TX73_020020	0.19	+0.4
4,364,753	+		TX73_020020	0.24	+1.3
4,364,765	+		TX73_020020	0.28	-1.1