Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014855

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,243,466	+		TX73_014850	0.36	-3.0
3,243,466	+		TX73_014850	0.36	-1.3
3,243,466	+		TX73_014850	0.36	-3.6
3,243,466	+		TX73_014850	0.36	-2.6
3,243,474	-		TX73_014850	0.36	-2.7
3,243,474	-		TX73_014850	0.36	-5.3
3,243,474	-		TX73_014850	0.36	-3.9
3,243,474	-		TX73_014850	0.36	-3.0
3,243,476	+		TX73_014850	0.36	-4.3
3,243,493	+		TX73_014850	0.38	-2.3
3,243,518	+		TX73_014850	0.39	-4.3
3,243,518	+		TX73_014850	0.39	+0.3
3,243,519	-		TX73_014850	0.39	-5.3
3,243,520	-		TX73_014850	0.39	-5.0
3,243,525	+		TX73_014850	0.40	-0.8
3,243,528	-		TX73_014850	0.40	-4.7
3,243,528	-		TX73_014850	0.40	-3.8
3,243,553	+		TX73_014850	0.42	-4.8
3,243,561	-		TX73_014850	0.42	-2.3
3,243,561	-		TX73_014850	0.42	-4.2
3,243,561	-		TX73_014850	0.42	-3.5
3,243,600	+		TX73_014850	0.45	-2.4
3,243,603	-		TX73_014850	0.45	-4.6
3,243,631	+		TX73_014850	0.47	-2.5
3,243,639	-		TX73_014850	0.48	-1.8
3,243,657	+		TX73_014850	0.49	-3.6
3,243,816	+		TX73_014850	0.60	-5.3
3,243,823	-		TX73_014850	0.61	-4.4
3,243,846	-		TX73_014850	0.63	-3.9
3,243,846	-		TX73_014850	0.63	-4.0
3,243,846	-		TX73_014850	0.63	-4.7
3,243,855	+		TX73_014850	0.63	-3.5
3,243,873	-		TX73_014850	0.64	-3.9
3,243,881	-		TX73_014850	0.65	-3.7
3,243,903	-		TX73_014850	0.67	-5.1
3,243,920	-		TX73_014850	0.68	-3.1
3,243,947	-		TX73_014850	0.70	-3.6
3,243,952	-		TX73_014850	0.70	-3.1
3,243,952	-		TX73_014850	0.70	-3.0
3,243,995	+		TX73_014850	0.73	-2.2
3,244,021	+		TX73_014850	0.75	-1.6
3,244,042	+		TX73_014850	0.76	-2.5
3,244,042	+		TX73_014850	0.76	-1.5
3,244,042	+		TX73_014850	0.76	+0.4
3,244,042	+		TX73_014850	0.76	-2.6
3,244,042	+		TX73_014850	0.76	-0.8
3,244,042	+		TX73_014850	0.76	-1.7
3,244,042	+		TX73_014850	0.76	-0.9
3,244,042	+		TX73_014850	0.76	-2.8
3,244,050	-		TX73_014850	0.77	-1.6
3,244,050	-		TX73_014850	0.77	-3.6
3,244,050	-		TX73_014850	0.77	-2.4
3,244,050	-		TX73_014850	0.77	-2.1
3,244,050	-		TX73_014850	0.77	-4.4
3,244,050	-		TX73_014850	0.77	-2.1
3,244,052	+		TX73_014850	0.77	-4.4
3,244,052	-		TX73_014850	0.77	-3.9
3,244,060	-		TX73_014850	0.78	-3.6
3,244,062	-		TX73_014850	0.78	-1.7
3,244,067	-		TX73_014850	0.78	-2.4
3,244,078	+		TX73_014850	0.79	-2.2
3,244,078	+		TX73_014850	0.79	-1.2
3,244,078	+		TX73_014850	0.79	+1.2
3,244,078	+		TX73_014850	0.79	-1.3
3,244,078	+		TX73_014850	0.79	-0.6
3,244,078	+		TX73_014850	0.79	-1.9
3,244,078	+		TX73_014850	0.79	-1.0
3,244,078	+		TX73_014850	0.79	-0.1
3,244,086	-		TX73_014850	0.80	-4.6
3,244,086	-		TX73_014850	0.80	-0.7
3,244,086	-		TX73_014850	0.80	-4.5
3,244,086	-		TX73_014850	0.80	-2.9
3,244,090	-		TX73_014850	0.80	-4.3
3,244,142	+		TX73_014850	0.84	-5.0
3,244,145	-		TX73_014850	0.84	-4.0
3,244,156	+		TX73_014850	0.85	-0.2
3,244,161	+		TX73_014850	0.85	-1.3
3,244,208	+		TX73_014850	0.88	-1.1
3,244,279	-				-1.6
3,244,286	-				-4.5
3,244,326	-				-1.2
3,244,336	+				-2.5
3,244,394	-				-0.3
3,244,398	+				-0.5
3,244,406	-				+0.5
3,244,406	-				+0.1
3,244,406	-				-0.3
3,244,440	+				-2.7
3,244,443	-				-4.8
3,244,448	+				-2.5
3,244,480	+				-3.9
3,244,483	-				-3.6
3,244,544	-		TX73_014855	0.11	-2.5
3,244,558	+		TX73_014855	0.12	-4.5
3,244,570	-		TX73_014855	0.13	-4.1
3,244,575	-		TX73_014855	0.14	-4.5
3,244,584	-		TX73_014855	0.15	-2.5
3,244,592	+		TX73_014855	0.15	-3.2
3,244,600	-		TX73_014855	0.16	-4.1
3,244,623	-		TX73_014855	0.18	-0.3
3,244,657	+		TX73_014855	0.22	-3.6
3,244,682	-		TX73_014855	0.24	-3.5
3,244,689	-		TX73_014855	0.25	-3.5
3,244,689	-		TX73_014855	0.25	-4.9
3,244,764	+		TX73_014855	0.32	-3.9
3,244,772	-		TX73_014855	0.33	-5.1
3,244,772	-		TX73_014855	0.33	-4.0
3,244,772	-		TX73_014855	0.33	-2.4
3,244,772	-		TX73_014855	0.33	-4.7
3,244,772	-		TX73_014855	0.33	-2.3
3,244,772	-		TX73_014855	0.33	-2.3
3,244,825	+		TX73_014855	0.38	-3.7
3,244,833	-		TX73_014855	0.39	-4.0
3,244,850	+		TX73_014855	0.40	-4.1
3,244,881	-		TX73_014855	0.43	-2.9
3,244,898	-		TX73_014855	0.45	-4.9
3,244,916	-		TX73_014855	0.47	-3.9
3,244,916	-		TX73_014855	0.47	-0.7
3,244,916	-		TX73_014855	0.47	-4.9
3,244,926	-		TX73_014855	0.48	-1.3
3,244,927	+		TX73_014855	0.48	-3.9
3,244,927	+		TX73_014855	0.48	-2.2
3,244,927	+		TX73_014855	0.48	-3.5
3,244,927	+		TX73_014855	0.48	-3.5
3,244,934	+		TX73_014855	0.49	-2.5
3,244,934	+		TX73_014855	0.49	-3.4
3,244,934	+		TX73_014855	0.49	-3.3
3,244,935	-		TX73_014855	0.49	-2.1
3,244,935	-		TX73_014855	0.49	-4.2
3,244,935	-		TX73_014855	0.49	-4.3
3,244,935	-		TX73_014855	0.49	-4.7
3,244,935	-		TX73_014855	0.49	-5.4
3,244,935	-		TX73_014855	0.49	-2.9
3,244,952	-		TX73_014855	0.50	-3.5
3,244,968	+		TX73_014855	0.52	-4.4
3,245,026	+		TX73_014855	0.57	-4.1
3,245,086	+		TX73_014855	0.63	-4.6
3,245,088	+		TX73_014855	0.63	-2.0
3,245,094	-		TX73_014855	0.64	-2.8
3,245,096	+		TX73_014855	0.64	+0.4
3,245,101	+		TX73_014855	0.65	-3.9
3,245,102	+		TX73_014855	0.65	-3.2
3,245,102	+		TX73_014855	0.65	-4.0
3,245,108	+		TX73_014855	0.65	-2.5
3,245,110	-		TX73_014855	0.66	-4.0
3,245,132	+		TX73_014855	0.68	-4.3
3,245,140	-		TX73_014855	0.68	-3.1
3,245,168	-		TX73_014855	0.71	-3.2
3,245,168	-		TX73_014855	0.71	-4.7
3,245,168	-		TX73_014855	0.71	-4.0
3,245,198	-		TX73_014855	0.74	-3.6
3,245,212	-		TX73_014855	0.75	-4.0
3,245,219	+		TX73_014855	0.76	-4.0
3,245,219	+		TX73_014855	0.76	-4.0
3,245,222	-		TX73_014855	0.76	-5.0
3,245,227	-		TX73_014855	0.77	-2.1
3,245,227	-		TX73_014855	0.77	-2.4
3,245,227	-		TX73_014855	0.77	-4.3
3,245,244	-		TX73_014855	0.78	-3.8
3,245,267	+		TX73_014855	0.81	-1.5
3,245,267	+		TX73_014855	0.81	-5.3
3,245,267	+		TX73_014855	0.81	-4.4
3,245,267	+		TX73_014855	0.81	-3.5
3,245,274	-		TX73_014855	0.81	-4.8
3,245,275	-		TX73_014855	0.81	-4.7
3,245,275	-		TX73_014855	0.81	-3.9
3,245,275	-		TX73_014855	0.81	-4.6
3,245,295	+		TX73_014855	0.83	-2.3
3,245,303	+		TX73_014855	0.84	-2.9
3,245,303	+		TX73_014855	0.84	-2.9
3,245,303	+		TX73_014855	0.84	-3.7
3,245,303	+		TX73_014855	0.84	-3.2
3,245,303	+		TX73_014855	0.84	-3.2
3,245,303	+		TX73_014855	0.84	-4.4
3,245,303	+		TX73_014855	0.84	-3.3
3,245,308	-		TX73_014855	0.85	-2.8
3,245,311	-		TX73_014855	0.85	-4.2
3,245,311	-		TX73_014855	0.85	-1.3
3,245,311	-		TX73_014855	0.85	-3.7
3,245,311	-		TX73_014855	0.85	-2.5
3,245,311	-		TX73_014855	0.85	-3.0
3,245,311	-		TX73_014855	0.85	-2.3
3,245,311	-		TX73_014855	0.85	-3.6
3,245,368	+				-3.7
3,245,374	-				-4.1
3,245,376	-				-4.1
3,245,411	+				-1.7
3,245,411	+				-4.8
3,245,411	+				-0.5
3,245,411	+				-2.3
3,245,417	+				-0.9
3,245,417	+				-1.8
3,245,417	+				-1.5
3,245,417	+				-1.7
3,245,417	+				-1.7
3,245,417	+				-1.2
3,245,417	+				-3.3
3,245,419	-				-4.8
3,245,419	-				-2.8
3,245,422	+				-3.1
3,245,425	-				-0.8
3,245,425	-				-3.2
3,245,427	+				-4.0
3,245,429	+				-1.0
3,245,432	-				-3.5
3,245,444	+				-3.0
3,245,449	+				-2.5
3,245,449	+				-4.1
3,245,449	+				-4.2
3,245,457	-				-4.3
3,245,457	-				-3.8
3,245,457	-				-4.1
3,245,457	-				-2.9
3,245,457	-				-4.4
3,245,457	-				-3.2
3,245,463	-				-3.8
3,245,481	+				-3.3
3,245,481	+				-3.2
3,245,481	+				-4.7
3,245,489	-				-3.6
3,245,489	-				-4.0
3,245,491	-				-4.3
3,245,495	-				-1.7
3,245,504	-				-1.6
3,245,509	-				-1.5
3,245,622	+				-0.2
3,245,635	-				-0.6
3,245,647	-				+0.6
3,245,932	+				+0.8
3,245,940	-				+1.6
3,245,944	+				+1.0
3,245,952	-				+0.3
3,245,952	-				+0.3
3,245,994	+				-0.6
3,246,014	+				+0.8
3,246,034	-				-0.2
3,246,058	+				+0.2
3,246,065	+				+0.3
3,246,078	-				+0.9
3,246,086	-		TX73_014865	0.11	-2.0
3,246,088	+		TX73_014865	0.11	-0.9
3,246,095	+		TX73_014865	0.12	-1.2
3,246,095	+		TX73_014865	0.12	-1.3
3,246,095	+		TX73_014865	0.12	-0.2
3,246,095	+		TX73_014865	0.12	+0.8
3,246,095	+		TX73_014865	0.12	-0.2
3,246,095	+		TX73_014865	0.12	+0.8
3,246,095	+		TX73_014865	0.12	-0.5
3,246,095	+		TX73_014865	0.12	-0.1
3,246,103	-		TX73_014865	0.14	+1.4
3,246,103	-		TX73_014865	0.14	-0.6
3,246,103	-		TX73_014865	0.14	+0.2
3,246,103	-		TX73_014865	0.14	-0.1
3,246,103	-		TX73_014865	0.14	+0.2
3,246,103	-		TX73_014865	0.14	+0.9
3,246,113	+		TX73_014865	0.16	+0.2
3,246,143	+		TX73_014865	0.21	+0.1
3,246,143	+		TX73_014865	0.21	+0.1
3,246,148	+		TX73_014865	0.22	+0.4
3,246,156	-		TX73_014865	0.23	+1.1
3,246,156	-		TX73_014865	0.23	-0.6
3,246,165	+		TX73_014865	0.25	+0.2
3,246,193	-		TX73_014865	0.30	-0.3
3,246,205	-		TX73_014865	0.32	-0.2
3,246,213	+		TX73_014865	0.34	+0.6
3,246,272	+		TX73_014865	0.44	+0.8
3,246,294	-		TX73_014865	0.48	+0.4
3,246,300	-		TX73_014865	0.49	+0.5
3,246,315	+		TX73_014865	0.52	+0.1
3,246,322	-		TX73_014865	0.53	-0.2
3,246,340	+		TX73_014865	0.56	-0.1
3,246,340	+		TX73_014865	0.56	-0.5
3,246,348	-		TX73_014865	0.58	+0.2
3,246,353	+		TX73_014865	0.58	+0.6
3,246,363	+		TX73_014865	0.60	+0.9
3,246,376	-		TX73_014865	0.63	+0.9
3,246,376	-		TX73_014865	0.63	-0.6
3,246,376	-		TX73_014865	0.63	+0.1
3,246,378	+		TX73_014865	0.63	-1.4
3,246,378	+		TX73_014865	0.63	-0.4
3,246,378	+		TX73_014865	0.63	+0.8
3,246,378	+		TX73_014865	0.63	-0.5
3,246,386	-		TX73_014865	0.64	-0.0
3,246,424	+		TX73_014865	0.71	+0.1
3,246,424	+		TX73_014865	0.71	-1.3
3,246,433	-		TX73_014865	0.73	+0.7
3,246,455	-		TX73_014865	0.77	+0.8
3,246,457	+		TX73_014865	0.77	+0.4
3,246,457	+		TX73_014865	0.77	+0.2
3,246,460	-		TX73_014865	0.78	-0.8