Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011405

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
2,486,863	-		TX73_011400	0.23	+0.4
2,486,882	-		TX73_011400	0.26	+0.9
2,486,894	+		TX73_011400	0.27	-0.0
2,486,902	+		TX73_011400	0.28	+0.1
2,486,902	-		TX73_011400	0.28	+0.1
2,486,929	+		TX73_011400	0.31	+0.3
2,486,929	+		TX73_011400	0.31	-0.7
2,486,948	-		TX73_011400	0.33	+0.8
2,486,957	-		TX73_011400	0.34	+0.3
2,486,958	-		TX73_011400	0.34	+0.1
2,486,980	+		TX73_011400	0.37	+0.2
2,486,980	+		TX73_011400	0.37	+0.1
2,486,980	-		TX73_011400	0.37	+0.3
2,487,003	+		TX73_011400	0.39	-0.3
2,487,011	-		TX73_011400	0.40	-1.0
2,487,011	-		TX73_011400	0.40	-1.9
2,487,042	+		TX73_011400	0.44	-0.0
2,487,042	+		TX73_011400	0.44	-0.2
2,487,112	+		TX73_011400	0.51	+0.2
2,487,113	+		TX73_011400	0.52	-0.1
2,487,120	-		TX73_011400	0.52	-0.7
2,487,120	-		TX73_011400	0.52	+0.3
2,487,120	-		TX73_011400	0.52	-0.7
2,487,120	-		TX73_011400	0.52	-1.0
2,487,120	-		TX73_011400	0.52	-0.5
2,487,141	+		TX73_011400	0.55	-1.1
2,487,162	-		TX73_011400	0.57	-0.3
2,487,167	-		TX73_011400	0.58	-0.9
2,487,168	-		TX73_011400	0.58	-0.6
2,487,185	-		TX73_011400	0.60	+0.4
2,487,185	-		TX73_011400	0.60	-0.0
2,487,219	-		TX73_011400	0.63	-0.3
2,487,225	+		TX73_011400	0.64	-1.3
2,487,268	+		TX73_011400	0.69	-0.7
2,487,271	-		TX73_011400	0.69	+0.5
2,487,276	-		TX73_011400	0.70	-0.1
2,487,281	-		TX73_011400	0.70	+0.0
2,487,294	-		TX73_011400	0.72	-0.4
2,487,301	+		TX73_011400	0.73	-0.2
2,487,309	-		TX73_011400	0.74	-0.4
2,487,316	+		TX73_011400	0.74	+0.1
2,487,357	+		TX73_011400	0.79	-0.7
2,487,357	+		TX73_011400	0.79	+0.3
2,487,366	+		TX73_011400	0.80	-0.5
2,487,374	-		TX73_011400	0.81	-1.8
2,487,376	+		TX73_011400	0.81	+0.0
2,487,376	+		TX73_011400	0.81	-0.2
2,487,386	-		TX73_011400	0.82	+0.1
2,487,392	+		TX73_011400	0.83	+0.5
2,487,393	+		TX73_011400	0.83	-0.5
2,487,393	+		TX73_011400	0.83	-0.1
2,487,397	+		TX73_011400	0.83	-0.2
2,487,401	-		TX73_011400	0.84	-1.5
2,487,405	-		TX73_011400	0.84	+0.3
2,487,406	-		TX73_011400	0.84	+0.8
2,487,411	-		TX73_011400	0.85	+0.4
2,487,467	+				-0.3
2,487,475	-				-3.2
2,487,501	+				-0.5
2,487,509	-				-0.9
2,487,511	+				+0.2
2,487,541	-				+0.1
2,487,560	+				-0.5
2,487,584	-				-0.9
2,487,611	+				-0.4
2,487,611	+				-0.3
2,487,619	-				+0.5
2,487,655	+				-0.6
2,487,655	+				-0.1
2,487,669	+				+0.2
2,487,669	+				-0.6
2,487,669	+				-0.6
2,487,677	-				-0.0
2,487,677	-				-0.4
2,487,680	+				-0.0
2,487,690	+				-0.4
2,487,713	-				-0.0
2,487,713	-				-0.1
2,487,713	-				-0.9
2,487,739	+				+0.1
2,487,739	+				-0.1
2,487,739	+				+0.1
2,487,747	-				-0.9
2,487,780	-				-0.2
2,487,835	-				-0.5
2,487,976	+				+0.5
2,487,983	+				-0.5
2,487,991	-				-0.1
2,487,991	-				-1.0
2,488,040	+		TX73_011405	0.10	+1.0
2,488,068	-		TX73_011405	0.12	+1.9
2,488,118	+		TX73_011405	0.14	+1.2
2,488,126	-		TX73_011405	0.15	+0.1
2,488,126	-		TX73_011405	0.15	+0.1
2,488,137	-		TX73_011405	0.15	+1.7
2,488,141	+		TX73_011405	0.16	-2.4
2,488,178	+		TX73_011405	0.18	+0.6
2,488,186	-		TX73_011405	0.18	+1.1
2,488,278	-		TX73_011405	0.23	+0.5
2,488,335	-		TX73_011405	0.26	-1.4
2,488,335	-		TX73_011405	0.26	-2.0
2,488,362	-		TX73_011405	0.28	+0.4
2,488,464	+		TX73_011405	0.33	-0.2
2,488,478	+		TX73_011405	0.34	-0.4
2,488,573	-		TX73_011405	0.39	-2.0
2,488,614	+		TX73_011405	0.41	+0.5
2,488,712	-		TX73_011405	0.46	+1.5
2,488,763	-		TX73_011405	0.49	-0.3
2,488,767	-		TX73_011405	0.49	-0.9
2,488,788	+		TX73_011405	0.51	+1.2
2,488,796	-		TX73_011405	0.51	+0.8
2,488,822	-		TX73_011405	0.52	+0.5
2,488,834	-		TX73_011405	0.53	-1.1
2,488,937	+		TX73_011405	0.59	+0.8
2,488,948	+		TX73_011405	0.59	-2.1
2,488,948	-		TX73_011405	0.59	+0.1
2,488,949	-		TX73_011405	0.59	+0.2
2,488,955	+		TX73_011405	0.60	-0.1
2,488,970	-		TX73_011405	0.60	-1.9
2,489,010	-		TX73_011405	0.63	+0.0
2,489,018	+		TX73_011405	0.63	+0.5
2,489,026	-		TX73_011405	0.63	+0.1
2,489,026	-		TX73_011405	0.63	+0.1
2,489,031	-		TX73_011405	0.64	-0.1
2,489,042	+		TX73_011405	0.64	-1.2
2,489,050	-		TX73_011405	0.65	-0.8
2,489,052	+		TX73_011405	0.65	-0.3
2,489,067	+		TX73_011405	0.66	+0.1
2,489,073	-		TX73_011405	0.66	+0.9
2,489,075	-		TX73_011405	0.66	+0.4
2,489,098	-		TX73_011405	0.67	-0.9
2,489,098	-		TX73_011405	0.67	-0.2
2,489,145	+		TX73_011405	0.70	+0.3
2,489,173	+		TX73_011405	0.71	-1.4
2,489,183	+		TX73_011405	0.72	+1.3
2,489,231	+		TX73_011405	0.74	-0.6
2,489,231	+		TX73_011405	0.74	+0.2
2,489,231	+		TX73_011405	0.74	+0.2
2,489,239	-		TX73_011405	0.75	+0.6
2,489,271	-		TX73_011405	0.77	-2.3
2,489,275	+		TX73_011405	0.77	-1.9
2,489,317	+		TX73_011405	0.79	-0.8
2,489,343	+		TX73_011405	0.81	-0.7
2,489,365	+		TX73_011405	0.82	-0.7
2,489,366	-		TX73_011405	0.82	-2.0
2,489,371	+		TX73_011405	0.82	+0.3
2,489,373	+		TX73_011405	0.82	+1.2
2,489,388	-		TX73_011405	0.83	-0.2
2,489,439	-		TX73_011405	0.86	-0.2
2,489,466	+		TX73_011405	0.87	-0.0
2,489,488	+		TX73_011405	0.88	+0.4
2,489,506	-		TX73_011405	0.89	-1.4
2,489,626	-				-0.2
2,489,628	+				-3.6
2,489,636	-				-1.2
2,489,636	-				+0.7
2,489,636	-				-0.6
2,489,636	-				+0.3
2,489,636	-				-1.6
2,489,670	-				+0.0
2,489,681	-				+0.8
2,489,699	+				-0.1
2,489,705	-				-1.0
2,489,742	+				-0.3
2,489,767	+				+0.0
2,489,771	+				-0.0
2,489,835	-				+0.4
2,489,837	-				-0.9
2,489,837	-				-0.3
2,489,843	+				+0.4
2,489,856	+				-0.4
2,489,857	-				-0.8
2,489,866	-				+0.5
2,489,904	+				-0.8
2,489,904	+				-1.6
2,489,904	-				-0.4
2,489,932	+				-0.0
2,489,947	+				-0.7
2,489,948	+				+0.5
2,489,951	-				-0.2
2,489,961	-				-0.4
2,489,973	-				-0.4
2,489,986	+				-0.5
2,489,988	-				-1.5
2,489,993	-				-0.3
2,489,994	+				+0.3
2,490,006	+				+0.3
2,490,024	+				+0.4
2,490,056	+		TX73_011410	0.11	-0.6
2,490,056	+		TX73_011410	0.11	-0.3
2,490,074	-		TX73_011410	0.11	-0.3
2,490,084	-		TX73_011410	0.12	+0.4
2,490,085	-		TX73_011410	0.12	-0.4
2,490,096	+		TX73_011410	0.12	-1.0
2,490,104	-		TX73_011410	0.12	-1.5
2,490,105	+		TX73_011410	0.12	-0.7
2,490,107	+		TX73_011410	0.13	+0.2
2,490,107	+		TX73_011410	0.13	+0.1
2,490,115	-		TX73_011410	0.13	-0.2
2,490,115	-		TX73_011410	0.13	+0.9
2,490,156	+		TX73_011410	0.14	-0.5
2,490,164	+		TX73_011410	0.14	-0.6
2,490,165	-		TX73_011410	0.14	-0.3
2,490,165	-		TX73_011410	0.14	-1.1
2,490,185	-		TX73_011410	0.15	-0.4
2,490,196	+		TX73_011410	0.15	+0.6
2,490,204	-		TX73_011410	0.16	+0.1
2,490,214	+		TX73_011410	0.16	-0.5
2,490,236	-		TX73_011410	0.17	+0.5
2,490,245	+		TX73_011410	0.17	-0.2
2,490,253	-		TX73_011410	0.17	-0.2
2,490,253	-		TX73_011410	0.17	-0.4
2,490,253	-		TX73_011410	0.17	-0.6
2,490,255	-		TX73_011410	0.17	+0.1
2,490,255	-		TX73_011410	0.17	-0.4
2,490,257	-		TX73_011410	0.17	-2.5
2,490,261	+		TX73_011410	0.17	-0.3
2,490,267	+		TX73_011410	0.18	-0.8
2,490,277	+		TX73_011410	0.18	-1.4
2,490,285	-		TX73_011410	0.18	-0.4
2,490,315	+		TX73_011410	0.19	-0.1
2,490,341	-		TX73_011410	0.20	-0.1
2,490,346	-		TX73_011410	0.20	-0.1
2,490,372	+		TX73_011410	0.21	-0.5
2,490,409	+		TX73_011410	0.22	+0.0
2,490,436	+		TX73_011410	0.23	-0.2
2,490,440	-		TX73_011410	0.23	-0.2
2,490,466	-		TX73_011410	0.24	+0.6
2,490,466	-		TX73_011410	0.24	-0.1
2,490,466	-		TX73_011410	0.24	+0.2
2,490,471	-		TX73_011410	0.24	-0.2
2,490,499	+		TX73_011410	0.25	-0.8
2,490,499	+		TX73_011410	0.25	+0.1
2,490,505	+		TX73_011410	0.25	-0.6
2,490,505	+		TX73_011410	0.25	+0.2
2,490,507	-		TX73_011410	0.25	+0.2
2,490,507	-		TX73_011410	0.25	-0.1
2,490,507	-		TX73_011410	0.25	-1.4
2,490,507	-		TX73_011410	0.25	+0.4
2,490,507	-		TX73_011410	0.25	-0.6
2,490,513	-		TX73_011410	0.26	-0.4
2,490,514	-		TX73_011410	0.26	+0.3
2,490,515	-		TX73_011410	0.26	-1.2
2,490,533	-		TX73_011410	0.26	+0.0
2,490,533	-		TX73_011410	0.26	-0.5
2,490,533	-		TX73_011410	0.26	-0.7
2,490,567	-		TX73_011410	0.27	-0.4
2,490,570	-		TX73_011410	0.27	-0.6
2,490,580	-		TX73_011410	0.28	-0.3
2,490,599	-		TX73_011410	0.28	+0.1
2,490,641	+		TX73_011410	0.30	-0.3
2,490,677	+		TX73_011410	0.31	-0.3
2,490,700	-		TX73_011410	0.31	-0.2
2,490,701	-		TX73_011410	0.32	-0.8