Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001170

Experiment: PM with succinate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001160 and TX73_001165 are separated by 272 nucleotidesTX73_001165 and TX73_001170 are separated by 143 nucleotidesTX73_001170 and TX73_001175 are separated by 220 nucleotides TX73_001160: TX73_001160 - molybdopterin-dependent oxidoreductase, at 249,585 to 250,364 _001160 TX73_001165: TX73_001165 - superoxide dismutase family protein, at 250,637 to 251,155 _001165 TX73_001170: TX73_001170 - YbfB/YjiJ family MFS transporter, at 251,299 to 252,486 _001170 TX73_001175: TX73_001175 - 3-isopropylmalate dehydrogenase, at 252,707 to 253,819 _001175 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1at 250.332 kb on + strandat 250.347 kb on - strandat 250.365 kb on - strandat 250.365 kb on - strandat 250.367 kb on + strandat 250.369 kb on - strandat 250.375 kb on - strandat 250.375 kb on - strandat 250.516 kb on + strandat 250.524 kb on - strandat 250.587 kb on + strandat 250.595 kb on - strandat 250.620 kb on + strandat 250.630 kb on - strandat 250.631 kb on + strandat 250.631 kb on + strandat 250.652 kb on + strandat 250.654 kb on + strandat 250.677 kb on + strandat 250.702 kb on + strand, within TX73_001165at 250.715 kb on - strand, within TX73_001165at 250.715 kb on - strand, within TX73_001165at 250.760 kb on - strand, within TX73_001165at 250.770 kb on - strand, within TX73_001165at 250.771 kb on + strand, within TX73_001165at 250.779 kb on - strand, within TX73_001165at 250.804 kb on - strand, within TX73_001165at 250.834 kb on + strand, within TX73_001165at 250.835 kb on - strand, within TX73_001165at 250.846 kb on + strand, within TX73_001165at 250.893 kb on - strand, within TX73_001165at 250.927 kb on - strand, within TX73_001165at 250.966 kb on + strand, within TX73_001165at 251.028 kb on - strand, within TX73_001165at 251.046 kb on - strand, within TX73_001165at 251.046 kb on - strand, within TX73_001165at 251.068 kb on - strand, within TX73_001165at 251.086 kb on + strand, within TX73_001165at 251.094 kb on - strand, within TX73_001165at 251.094 kb on - strand, within TX73_001165at 251.157 kb on - strandat 251.164 kb on + strandat 251.230 kb on - strandat 251.351 kb on - strandat 251.380 kb on - strandat 251.380 kb on - strandat 251.423 kb on - strand, within TX73_001170at 251.469 kb on + strand, within TX73_001170at 251.482 kb on + strand, within TX73_001170at 251.497 kb on - strand, within TX73_001170at 251.536 kb on + strand, within TX73_001170at 251.544 kb on + strand, within TX73_001170at 251.574 kb on - strand, within TX73_001170at 251.593 kb on - strand, within TX73_001170at 251.598 kb on - strand, within TX73_001170at 251.609 kb on - strand, within TX73_001170at 251.628 kb on + strand, within TX73_001170at 251.636 kb on + strand, within TX73_001170at 251.636 kb on - strand, within TX73_001170at 251.638 kb on + strand, within TX73_001170at 251.664 kb on - strand, within TX73_001170at 251.674 kb on + strand, within TX73_001170at 251.675 kb on + strand, within TX73_001170at 251.680 kb on + strand, within TX73_001170at 251.688 kb on - strand, within TX73_001170at 251.704 kb on + strand, within TX73_001170at 251.736 kb on + strand, within TX73_001170at 251.741 kb on - strand, within TX73_001170at 251.791 kb on + strand, within TX73_001170at 251.831 kb on + strand, within TX73_001170at 251.843 kb on - strand, within TX73_001170at 251.846 kb on + strand, within TX73_001170at 251.854 kb on - strand, within TX73_001170at 251.866 kb on + strand, within TX73_001170at 251.878 kb on - strand, within TX73_001170at 251.888 kb on + strand, within TX73_001170at 251.896 kb on - strand, within TX73_001170at 251.896 kb on - strand, within TX73_001170at 251.910 kb on + strand, within TX73_001170at 251.924 kb on - strand, within TX73_001170at 251.943 kb on + strand, within TX73_001170at 251.943 kb on + strand, within TX73_001170at 251.946 kb on + strand, within TX73_001170at 251.951 kb on - strand, within TX73_001170at 251.960 kb on - strand, within TX73_001170at 251.967 kb on + strand, within TX73_001170at 252.006 kb on + strand, within TX73_001170at 252.014 kb on - strand, within TX73_001170at 252.014 kb on - strand, within TX73_001170at 252.030 kb on - strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.038 kb on + strand, within TX73_001170at 252.041 kb on - strand, within TX73_001170at 252.046 kb on - strand, within TX73_001170at 252.046 kb on - strand, within TX73_001170at 252.046 kb on - strand, within TX73_001170at 252.046 kb on - strand, within TX73_001170at 252.046 kb on - strand, within TX73_001170at 252.050 kb on - strand, within TX73_001170at 252.059 kb on + strand, within TX73_001170at 252.105 kb on - strand, within TX73_001170at 252.121 kb on + strand, within TX73_001170at 252.126 kb on + strand, within TX73_001170at 252.126 kb on + strand, within TX73_001170at 252.126 kb on + strand, within TX73_001170at 252.144 kb on - strand, within TX73_001170at 252.204 kb on + strand, within TX73_001170at 252.209 kb on + strand, within TX73_001170at 252.217 kb on - strand, within TX73_001170at 252.221 kb on + strand, within TX73_001170at 252.221 kb on + strand, within TX73_001170at 252.222 kb on - strand, within TX73_001170at 252.253 kb on - strand, within TX73_001170at 252.263 kb on + strand, within TX73_001170at 252.269 kb on + strand, within TX73_001170at 252.269 kb on + strand, within TX73_001170at 252.271 kb on - strand, within TX73_001170at 252.272 kb on - strand, within TX73_001170at 252.272 kb on - strand, within TX73_001170at 252.311 kb on + strand, within TX73_001170at 252.311 kb on - strand, within TX73_001170at 252.321 kb on - strand, within TX73_001170at 252.360 kb on + strand, within TX73_001170at 252.370 kb on - strandat 252.395 kb on + strandat 252.410 kb on + strandat 252.427 kb on + strandat 252.427 kb on + strandat 252.446 kb on + strandat 252.446 kb on + strandat 252.454 kb on - strandat 252.485 kb on + strandat 252.488 kb on - strandat 252.489 kb on - strandat 252.493 kb on + strandat 252.493 kb on + strandat 252.493 kb on + strandat 252.493 kb on + strandat 252.508 kb on - strandat 252.517 kb on - strandat 252.538 kb on - strandat 252.556 kb on + strandat 252.558 kb on + strandat 252.562 kb on + strandat 252.567 kb on + strandat 252.570 kb on - strandat 252.575 kb on - strandat 252.575 kb on - strandat 252.576 kb on - strandat 252.581 kb on + strandat 252.589 kb on - strandat 252.621 kb on + strandat 252.626 kb on + strandat 252.634 kb on - strandat 252.670 kb on + strandat 252.678 kb on - strandat 252.681 kb on + strandat 252.698 kb on + strandat 252.706 kb on - strandat 252.706 kb on - strandat 252.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate aerobic in dark
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250,332 + -1.4
250,347 - -0.3
250,365 - +0.8
250,365 - +0.5
250,367 + +0.8
250,369 - +0.4
250,375 - +0.2
250,375 - +0.3
250,516 + -1.3
250,524 - -0.2
250,587 + +0.9
250,595 - +0.2
250,620 + +0.1
250,630 - +0.8
250,631 + +1.0
250,631 + -0.0
250,652 + +1.0
250,654 + -0.5
250,677 + +1.3
250,702 + TX73_001165 0.13 +0.2
250,715 - TX73_001165 0.15 -0.6
250,715 - TX73_001165 0.15 +0.0
250,760 - TX73_001165 0.24 -1.5
250,770 - TX73_001165 0.26 -0.4
250,771 + TX73_001165 0.26 -0.0
250,779 - TX73_001165 0.27 -0.3
250,804 - TX73_001165 0.32 +0.9
250,834 + TX73_001165 0.38 -0.5
250,835 - TX73_001165 0.38 +0.5
250,846 + TX73_001165 0.40 -0.0
250,893 - TX73_001165 0.49 -0.3
250,927 - TX73_001165 0.56 -0.6
250,966 + TX73_001165 0.63 +0.3
251,028 - TX73_001165 0.75 -0.2
251,046 - TX73_001165 0.79 +0.0
251,046 - TX73_001165 0.79 -2.3
251,068 - TX73_001165 0.83 +1.1
251,086 + TX73_001165 0.87 +0.2
251,094 - TX73_001165 0.88 +0.0
251,094 - TX73_001165 0.88 +0.2
251,157 - +0.4
251,164 + +0.2
251,230 - +0.0
251,351 - -2.9
251,380 - -0.4
251,380 - +0.5
251,423 - TX73_001170 0.10 -0.4
251,469 + TX73_001170 0.14 -0.9
251,482 + TX73_001170 0.15 -0.5
251,497 - TX73_001170 0.17 -0.5
251,536 + TX73_001170 0.20 +0.6
251,544 + TX73_001170 0.21 +0.5
251,574 - TX73_001170 0.23 -0.3
251,593 - TX73_001170 0.25 -0.1
251,598 - TX73_001170 0.25 +0.0
251,609 - TX73_001170 0.26 -0.5
251,628 + TX73_001170 0.28 -0.4
251,636 + TX73_001170 0.28 +0.5
251,636 - TX73_001170 0.28 -0.4
251,638 + TX73_001170 0.29 -0.9
251,664 - TX73_001170 0.31 +0.3
251,674 + TX73_001170 0.32 +0.2
251,675 + TX73_001170 0.32 +0.2
251,680 + TX73_001170 0.32 +0.7
251,688 - TX73_001170 0.33 +0.8
251,704 + TX73_001170 0.34 +0.1
251,736 + TX73_001170 0.37 -0.1
251,741 - TX73_001170 0.37 +0.8
251,791 + TX73_001170 0.41 -0.1
251,831 + TX73_001170 0.45 +0.4
251,843 - TX73_001170 0.46 -0.9
251,846 + TX73_001170 0.46 +0.1
251,854 - TX73_001170 0.47 +0.2
251,866 + TX73_001170 0.48 -0.1
251,878 - TX73_001170 0.49 +0.7
251,888 + TX73_001170 0.50 -0.7
251,896 - TX73_001170 0.50 -0.5
251,896 - TX73_001170 0.50 -0.1
251,910 + TX73_001170 0.51 +0.4
251,924 - TX73_001170 0.53 -0.9
251,943 + TX73_001170 0.54 +0.6
251,943 + TX73_001170 0.54 -0.1
251,946 + TX73_001170 0.54 +0.3
251,951 - TX73_001170 0.55 -0.1
251,960 - TX73_001170 0.56 -1.6
251,967 + TX73_001170 0.56 -1.3
252,006 + TX73_001170 0.60 -0.8
252,014 - TX73_001170 0.60 -0.2
252,014 - TX73_001170 0.60 +0.1
252,030 - TX73_001170 0.62 -0.5
252,038 + TX73_001170 0.62 -1.7
252,038 + TX73_001170 0.62 -0.2
252,038 + TX73_001170 0.62 -0.9
252,038 + TX73_001170 0.62 -0.7
252,038 + TX73_001170 0.62 +0.6
252,038 + TX73_001170 0.62 -0.1
252,041 - TX73_001170 0.62 -0.0
252,046 - TX73_001170 0.63 +0.3
252,046 - TX73_001170 0.63 -0.4
252,046 - TX73_001170 0.63 -0.1
252,046 - TX73_001170 0.63 -0.5
252,046 - TX73_001170 0.63 -0.1
252,050 - TX73_001170 0.63 -0.9
252,059 + TX73_001170 0.64 +1.1
252,105 - TX73_001170 0.68 +1.0
252,121 + TX73_001170 0.69 -1.2
252,126 + TX73_001170 0.70 +0.1
252,126 + TX73_001170 0.70 +0.2
252,126 + TX73_001170 0.70 -0.2
252,144 - TX73_001170 0.71 -0.7
252,204 + TX73_001170 0.76 -0.2
252,209 + TX73_001170 0.77 +0.1
252,217 - TX73_001170 0.77 +0.0
252,221 + TX73_001170 0.78 +0.3
252,221 + TX73_001170 0.78 +0.4
252,222 - TX73_001170 0.78 +0.6
252,253 - TX73_001170 0.80 -0.5
252,263 + TX73_001170 0.81 +0.7
252,269 + TX73_001170 0.82 -0.4
252,269 + TX73_001170 0.82 -0.5
252,271 - TX73_001170 0.82 -0.2
252,272 - TX73_001170 0.82 -0.5
252,272 - TX73_001170 0.82 +0.0
252,311 + TX73_001170 0.85 -0.6
252,311 - TX73_001170 0.85 -1.9
252,321 - TX73_001170 0.86 +1.5
252,360 + TX73_001170 0.89 +0.3
252,370 - +0.5
252,395 + +0.3
252,410 + +0.3
252,427 + +0.2
252,427 + -0.2
252,446 + -1.5
252,446 + +0.5
252,454 - +0.1
252,485 + -0.4
252,488 - -1.9
252,489 - +0.1
252,493 + -0.7
252,493 + +0.0
252,493 + -0.2
252,493 + -1.2
252,508 - +0.4
252,517 - -0.1
252,538 - -0.0
252,556 + +0.6
252,558 + +0.7
252,562 + +0.6
252,567 + +0.1
252,570 - +0.2
252,575 - +0.6
252,575 - -0.0
252,576 - -0.3
252,581 + +1.0
252,589 - +0.6
252,621 + +1.0
252,626 + -0.4
252,634 - +0.0
252,670 + +0.1
252,678 - -0.0
252,681 + +0.8
252,698 + +0.3
252,706 - -0.4
252,706 - +0.1
252,711 - -0.2

Or see this region's nucleotide sequence