Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014670

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
3,206,388	-				-0.3
3,206,395	-				-0.6
3,206,438	+				-1.9
3,206,448	+				-0.0
3,206,448	+				-1.3
3,206,448	+				+1.2
3,206,451	-				-1.9
3,206,456	-				-0.0
3,206,486	-		TX73_014665	0.12	-1.3
3,206,492	-		TX73_014665	0.13	-1.0
3,206,492	-		TX73_014665	0.13	-2.3
3,206,492	-		TX73_014665	0.13	-0.5
3,206,492	-		TX73_014665	0.13	-2.0
3,206,507	-		TX73_014665	0.16	-0.4
3,206,516	-		TX73_014665	0.18	-2.1
3,206,516	-		TX73_014665	0.18	-0.3
3,206,528	-		TX73_014665	0.21	-3.8
3,206,528	-		TX73_014665	0.21	+0.0
3,206,539	-		TX73_014665	0.24	-1.2
3,206,551	-		TX73_014665	0.26	-1.9
3,206,552	-		TX73_014665	0.27	-2.0
3,206,552	-		TX73_014665	0.27	-0.5
3,206,552	-		TX73_014665	0.27	-1.7
3,206,552	-		TX73_014665	0.27	-0.1
3,206,552	-		TX73_014665	0.27	-1.3
3,206,552	-		TX73_014665	0.27	-0.4
3,206,552	-		TX73_014665	0.27	-0.8
3,206,599	-		TX73_014665	0.37	-1.2
3,206,610	-		TX73_014665	0.40	-1.2
3,206,628	-		TX73_014665	0.44	+0.3
3,206,643	-		TX73_014665	0.47	-1.0
3,206,738	-		TX73_014665	0.69	-1.4
3,206,813	-		TX73_014665	0.86	-0.7
3,206,846	-				+0.7
3,206,945	+				-0.4
3,206,945	+				+0.4
3,206,945	+				-0.1
3,206,945	+				-1.3
3,206,953	-				-1.0
3,206,953	-				+0.3
3,206,953	-				+0.6
3,206,953	-				-0.9
3,206,953	-				+0.1
3,206,953	-				-0.3
3,206,953	-				+0.6
3,206,953	-				-1.0
3,206,953	-				+1.0
3,206,955	-				-0.8
3,207,017	-				-0.1
3,207,019	+				-0.6
3,207,019	+				-0.1
3,207,027	-				-0.2
3,207,027	-				+0.3
3,207,027	-				+0.4
3,207,033	+				-0.4
3,207,063	-				+0.4
3,207,063	-				-0.6
3,207,097	-				-0.1
3,207,097	-				+0.8
3,207,177	+		TX73_014670	0.12	-0.0
3,207,185	-		TX73_014670	0.12	-0.5
3,207,200	-		TX73_014670	0.14	-0.3
3,207,200	-		TX73_014670	0.14	+0.1
3,207,206	+		TX73_014670	0.14	-0.2
3,207,210	-		TX73_014670	0.15	-0.3
3,207,242	-		TX73_014670	0.18	+0.1
3,207,247	+		TX73_014670	0.19	-0.8
3,207,260	+		TX73_014670	0.20	-0.4
3,207,260	+		TX73_014670	0.20	+0.3
3,207,275	+		TX73_014670	0.21	-0.3
3,207,288	-		TX73_014670	0.23	-1.1
3,207,296	-		TX73_014670	0.24	+0.8
3,207,300	-		TX73_014670	0.24	+0.2
3,207,332	+		TX73_014670	0.27	+0.6
3,207,340	+		TX73_014670	0.28	-0.3
3,207,354	+		TX73_014670	0.29	+0.2
3,207,359	+		TX73_014670	0.30	-1.0
3,207,359	+		TX73_014670	0.30	-0.3
3,207,364	-		TX73_014670	0.30	-0.2
3,207,374	+		TX73_014670	0.31	+0.2
3,207,377	-		TX73_014670	0.32	+0.8
3,207,387	-		TX73_014670	0.33	-0.2
3,207,389	+		TX73_014670	0.33	-0.9
3,207,397	+		TX73_014670	0.34	-0.3
3,207,407	+		TX73_014670	0.35	+0.2
3,207,412	+		TX73_014670	0.35	+0.3
3,207,420	-		TX73_014670	0.36	+0.3
3,207,423	+		TX73_014670	0.36	-0.2
3,207,431	-		TX73_014670	0.37	+0.6
3,207,438	+		TX73_014670	0.38	-0.2
3,207,440	+		TX73_014670	0.38	+0.3
3,207,440	+		TX73_014670	0.38	+0.2
3,207,440	+		TX73_014670	0.38	+0.1
3,207,440	+		TX73_014670	0.38	-0.9
3,207,440	+		TX73_014670	0.38	-0.9
3,207,440	+		TX73_014670	0.38	-0.6
3,207,440	+		TX73_014670	0.38	-2.0
3,207,448	-		TX73_014670	0.39	-1.0
3,207,448	-		TX73_014670	0.39	-0.4
3,207,448	-		TX73_014670	0.39	-0.1
3,207,448	-		TX73_014670	0.39	-0.2
3,207,448	-		TX73_014670	0.39	-0.9
3,207,448	-		TX73_014670	0.39	-0.3
3,207,448	-		TX73_014670	0.39	-0.1
3,207,448	-		TX73_014670	0.39	+0.4
3,207,448	-		TX73_014670	0.39	+0.2
3,207,462	+		TX73_014670	0.40	+0.1
3,207,476	+		TX73_014670	0.42	+0.0
3,207,476	+		TX73_014670	0.42	-0.5
3,207,476	+		TX73_014670	0.42	+0.3
3,207,484	-		TX73_014670	0.43	-0.1
3,207,499	-		TX73_014670	0.44	-0.8
3,207,527	+		TX73_014670	0.47	-0.3
3,207,534	-		TX73_014670	0.48	-0.7
3,207,555	+		TX73_014670	0.50	+0.3
3,207,557	+		TX73_014670	0.50	+0.8
3,207,565	-		TX73_014670	0.51	+0.4
3,207,578	+		TX73_014670	0.52	+0.5
3,207,612	+		TX73_014670	0.55	-0.8
3,207,627	+		TX73_014670	0.57	-0.0
3,207,665	+		TX73_014670	0.61	+0.7
3,207,665	+		TX73_014670	0.61	+0.4
3,207,665	+		TX73_014670	0.61	-1.1
3,207,673	-		TX73_014670	0.62	-0.2
3,207,688	+		TX73_014670	0.63	-1.5
3,207,695	+		TX73_014670	0.64	+0.1
3,207,698	-		TX73_014670	0.64	-0.3
3,207,709	+		TX73_014670	0.65	-0.1
3,207,711	+		TX73_014670	0.65	-0.0
3,207,717	-		TX73_014670	0.66	+0.5
3,207,717	-		TX73_014670	0.66	+0.0
3,207,757	+		TX73_014670	0.70	-0.4
3,207,757	+		TX73_014670	0.70	-0.9
3,207,757	+		TX73_014670	0.70	-0.4
3,207,765	-		TX73_014670	0.71	+0.3
3,207,812	-		TX73_014670	0.76	-0.2
3,207,816	-		TX73_014670	0.76	-1.1
3,207,887	+		TX73_014670	0.83	-0.1
3,207,906	+		TX73_014670	0.85	-0.2
3,207,906	+		TX73_014670	0.85	+0.5
3,207,906	+		TX73_014670	0.85	-0.3
3,207,914	-		TX73_014670	0.86	-0.7
3,207,914	-		TX73_014670	0.86	-0.6
3,207,914	-		TX73_014670	0.86	-1.7
3,207,914	-		TX73_014670	0.86	-0.0
3,207,914	-		TX73_014670	0.86	+1.3
3,207,914	-		TX73_014670	0.86	-0.3
3,207,948	+		TX73_014670	0.89	-0.1
3,207,948	+		TX73_014670	0.89	+0.7
3,207,948	+		TX73_014670	0.89	-0.2
3,207,956	-				-0.2
3,207,956	-				-0.6
3,207,956	-				-0.2
3,207,956	-				-1.0
3,207,956	-				-1.0
3,207,971	-				-0.3
3,207,978	+				+0.5
3,207,979	-				-0.4
3,208,005	+				+0.1
3,208,013	-				-0.7
3,208,018	-				+1.1
3,208,042	+				+0.5
3,208,054	+				-1.1
3,208,064	+				-0.0
3,208,067	-				-0.3
3,208,072	-				+0.8
3,208,093	+				-0.1
3,208,093	+				+0.2
3,208,101	-				+0.1
3,208,141	-				-0.4
3,208,164	-				-0.6
3,208,189	-				+0.5
3,208,218	+				+0.1
3,208,236	-				+0.8
3,208,262	+				-0.3
3,208,264	+				-0.1
3,208,264	+				-0.2
3,208,272	-				-2.3
3,208,313	+				-0.4
3,208,313	+				-0.2
3,208,315	-				-0.6
3,208,336	-				+0.0
3,208,336	-				-0.3
3,208,338	+				-0.6
3,208,347	-				-0.3
3,208,353	-				+0.4
3,208,359	-				-0.1
3,208,363	+				-0.2
3,208,378	-				+1.0
3,208,434	+		TX73_014675	0.13	+0.9
3,208,434	+		TX73_014675	0.13	-1.0
3,208,442	-		TX73_014675	0.13	-0.1
3,208,442	-		TX73_014675	0.13	-0.3
3,208,452	-		TX73_014675	0.14	+0.1
3,208,496	-		TX73_014675	0.16	-0.1
3,208,501	+		TX73_014675	0.16	+0.7
3,208,516	+		TX73_014675	0.17	-0.4
3,208,546	-		TX73_014675	0.19	-0.3
3,208,547	-		TX73_014675	0.19	-0.9
3,208,553	+		TX73_014675	0.20	+0.5
3,208,553	+		TX73_014675	0.20	+0.4
3,208,561	-		TX73_014675	0.20	-0.0
3,208,561	-		TX73_014675	0.20	+0.8
3,208,605	-		TX73_014675	0.23	+0.1
3,208,612	-		TX73_014675	0.23	-1.4
3,208,621	-		TX73_014675	0.24	+0.1
3,208,624	-		TX73_014675	0.24	-1.0
3,208,643	-		TX73_014675	0.25	+1.1
3,208,661	+		TX73_014675	0.26	+0.1
3,208,675	-		TX73_014675	0.27	-0.1
3,208,729	+		TX73_014675	0.30	-0.3
3,208,757	-		TX73_014675	0.32	+0.1
3,208,764	+		TX73_014675	0.32	-0.6
3,208,767	-		TX73_014675	0.32	+2.0
3,208,770	+		TX73_014675	0.32	-0.5
3,208,772	-		TX73_014675	0.32	-0.1
3,208,813	-		TX73_014675	0.35	-0.0
3,208,819	-		TX73_014675	0.35	-0.0
3,208,830	+		TX73_014675	0.36	-0.2
3,208,838	-		TX73_014675	0.36	+0.3
3,208,838	-		TX73_014675	0.36	+0.2
3,208,853	-		TX73_014675	0.37	+0.7
3,208,938	+		TX73_014675	0.42	-0.4
3,208,958	+		TX73_014675	0.43	-0.5
3,208,962	-		TX73_014675	0.44	+0.9