Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011325

Experiment: PM with succinate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate aerobic in dark
2,469,398	+		TX73_011320	0.69	+0.4
2,469,420	+		TX73_011320	0.70	+0.9
2,469,432	+		TX73_011320	0.71	-0.1
2,469,438	-		TX73_011320	0.71	-1.7
2,469,476	+		TX73_011320	0.73	-0.2
2,469,540	+		TX73_011320	0.75	-0.1
2,469,679	-		TX73_011320	0.81	-0.2
2,469,691	+		TX73_011320	0.82	-0.5
2,469,716	-		TX73_011320	0.83	+0.7
2,469,731	+		TX73_011320	0.83	+0.0
2,469,733	+		TX73_011320	0.83	+0.7
2,469,806	-		TX73_011320	0.86	+0.6
2,469,833	+		TX73_011320	0.88	-0.5
2,469,838	+		TX73_011320	0.88	-0.2
2,469,841	-		TX73_011320	0.88	+0.1
2,469,843	+		TX73_011320	0.88	-0.5
2,469,848	+		TX73_011320	0.88	-0.4
2,469,851	-		TX73_011320	0.88	-0.1
2,469,878	-		TX73_011320	0.89	+0.1
2,469,879	+		TX73_011320	0.90	-0.3
2,469,879	+		TX73_011320	0.90	+0.7
2,469,885	-		TX73_011320	0.90	+0.2
2,469,887	-		TX73_011320	0.90	+0.8
2,469,887	-		TX73_011320	0.90	-0.8
2,469,887	-		TX73_011320	0.90	-0.1
2,469,958	-				-0.1
2,469,973	+				-0.3
2,469,973	+				-0.4
2,469,973	+				+0.4
2,469,981	-				-0.3
2,469,981	-				-0.6
2,469,981	-				+0.1
2,469,981	-				+0.3
2,469,981	-				+0.5
2,469,981	-				-0.6
2,470,006	+				+1.2
2,470,014	-				+0.5
2,470,050	-				-0.8
2,470,056	+				-0.3
2,470,057	+				-0.8
2,470,067	+				+0.1
2,470,090	-				+0.5
2,470,090	-				+0.5
2,470,093	+				+0.6
2,470,095	+				-0.7
2,470,122	-				-0.9
2,470,127	-				+0.1
2,470,141	+				+0.1
2,470,144	-				-0.2
2,470,144	-				-0.1
2,470,163	+				-0.2
2,470,171	-				-0.4
2,470,196	+				+0.2
2,470,203	-				-0.3
2,470,244	+				+1.0
2,470,249	-				+0.1
2,470,252	-				-1.1
2,470,252	-				+0.6
2,470,272	+				+0.0
2,470,282	+				+0.7
2,470,285	-				+0.1
2,470,287	+				-0.3
2,470,288	+				-1.1
2,470,303	+				-0.4
2,470,342	+				+0.4
2,470,342	+				+0.5
2,470,350	-				-1.7
2,470,396	+				-0.0
2,470,414	+				+0.1
2,470,459	-				+0.1
2,470,484	-		TX73_011325	0.11	-0.1
2,470,486	+		TX73_011325	0.11	-0.7
2,470,486	+		TX73_011325	0.11	-0.6
2,470,494	-		TX73_011325	0.12	+0.4
2,470,494	-		TX73_011325	0.12	-0.4
2,470,494	-		TX73_011325	0.12	-0.8
2,470,495	-		TX73_011325	0.12	+0.5
2,470,502	-		TX73_011325	0.12	-2.5
2,470,518	+		TX73_011325	0.14	-0.1
2,470,538	-		TX73_011325	0.16	-0.7
2,470,538	-		TX73_011325	0.16	+0.1
2,470,545	-		TX73_011325	0.16	-0.9
2,470,552	-		TX73_011325	0.17	-0.8
2,470,593	-		TX73_011325	0.21	-1.8
2,470,601	+		TX73_011325	0.22	-1.1
2,470,601	+		TX73_011325	0.22	-0.7
2,470,601	+		TX73_011325	0.22	-0.3
2,470,611	+		TX73_011325	0.23	-0.7
2,470,611	+		TX73_011325	0.23	-1.3
2,470,632	-		TX73_011325	0.25	+0.5
2,470,666	-		TX73_011325	0.28	-0.2
2,470,668	+		TX73_011325	0.28	-0.9
2,470,700	-		TX73_011325	0.31	-1.0
2,470,764	+		TX73_011325	0.37	-1.3
2,470,794	-		TX73_011325	0.40	-0.6
2,470,829	+		TX73_011325	0.43	-2.0
2,470,842	-		TX73_011325	0.44	-1.5
2,470,872	-		TX73_011325	0.47	-0.4
2,470,877	-		TX73_011325	0.48	-0.6
2,470,889	+		TX73_011325	0.49	-2.1
2,470,907	-		TX73_011325	0.50	-0.7
2,470,907	-		TX73_011325	0.50	-0.7
2,470,916	+		TX73_011325	0.51	+0.1
2,470,918	+		TX73_011325	0.51	-0.1
2,470,926	-		TX73_011325	0.52	-1.2
2,470,994	-		TX73_011325	0.59	+0.4
2,471,022	+		TX73_011325	0.61	+0.1
2,471,030	+		TX73_011325	0.62	+0.0
2,471,030	-		TX73_011325	0.62	+0.5
2,471,032	-		TX73_011325	0.62	-0.6
2,471,059	-		TX73_011325	0.65	-0.4
2,471,065	-		TX73_011325	0.65	-0.3
2,471,079	+		TX73_011325	0.66	-0.2
2,471,079	+		TX73_011325	0.66	-0.7
2,471,079	+		TX73_011325	0.66	-0.1
2,471,089	+		TX73_011325	0.67	-0.5
2,471,109	+		TX73_011325	0.69	+0.1
2,471,109	+		TX73_011325	0.69	-0.6
2,471,117	+		TX73_011325	0.70	-0.1
2,471,142	-		TX73_011325	0.72	+0.0
2,471,150	+		TX73_011325	0.73	+0.6
2,471,150	+		TX73_011325	0.73	+0.5
2,471,150	+		TX73_011325	0.73	-1.0
2,471,152	-		TX73_011325	0.73	-0.9
2,471,158	-		TX73_011325	0.74	-0.1
2,471,158	-		TX73_011325	0.74	+0.3
2,471,158	-		TX73_011325	0.74	+0.9
2,471,158	-		TX73_011325	0.74	-0.2
2,471,165	+		TX73_011325	0.75	-0.3
2,471,191	+		TX73_011325	0.77	-0.1
2,471,191	+		TX73_011325	0.77	-1.0
2,471,199	-		TX73_011325	0.78	-1.1
2,471,206	+		TX73_011325	0.78	+0.6
2,471,211	+		TX73_011325	0.79	-0.6
2,471,212	-		TX73_011325	0.79	+0.4
2,471,214	+		TX73_011325	0.79	-0.5
2,471,240	+		TX73_011325	0.82	-0.9
2,471,254	-		TX73_011325	0.83	-0.7
2,471,254	-		TX73_011325	0.83	-0.0
2,471,261	+		TX73_011325	0.84	-0.1
2,471,269	-		TX73_011325	0.84	-1.0
2,471,269	-		TX73_011325	0.84	-1.2
2,471,293	+		TX73_011325	0.87	+0.0
2,471,293	+		TX73_011325	0.87	-1.5
2,471,293	+		TX73_011325	0.87	-0.6
2,471,301	-		TX73_011325	0.87	-0.7
2,471,301	-		TX73_011325	0.87	+0.6
2,471,327	-		TX73_011325	0.90	+0.0
2,471,336	-				+0.5
2,471,379	+				-1.9
2,471,385	+				-0.0
2,471,394	-				+0.0
2,471,431	+				+0.5
2,471,431	+				-0.6
2,471,431	+				-0.6
2,471,431	+				-0.9
2,471,438	-				+0.2
2,471,438	-				+0.1
2,471,439	-				+1.5
2,471,439	-				+1.2
2,471,439	-				+0.6
2,471,439	-				-0.2
2,471,439	-				+0.2
2,471,439	-				+0.1
2,471,470	+				-0.6
2,471,470	+				+0.3
2,471,520	-				+0.0
2,471,581	-		TX73_011330	0.20	-1.1
2,471,593	+		TX73_011330	0.23	-0.0
2,471,593	+		TX73_011330	0.23	+0.2
2,471,593	+		TX73_011330	0.23	-1.3
2,471,593	+		TX73_011330	0.23	-0.1
2,471,623	+		TX73_011330	0.28	+0.4
2,471,624	-		TX73_011330	0.28	+1.1
2,471,665	+		TX73_011330	0.35	+0.0
2,471,745	-		TX73_011330	0.49	-0.2
2,471,758	-		TX73_011330	0.51	+0.7
2,471,764	-		TX73_011330	0.52	+0.7
2,471,769	-		TX73_011330	0.53	+0.7
2,471,778	+		TX73_011330	0.55	+0.2
2,471,781	-		TX73_011330	0.55	+0.1
2,471,826	-		TX73_011330	0.63	-1.1
2,471,870	+		TX73_011330	0.71	-0.2
2,471,878	-		TX73_011330	0.72	+0.4
2,471,880	+		TX73_011330	0.72	+0.3
2,471,880	+		TX73_011330	0.72	-0.5
2,471,880	+		TX73_011330	0.72	-0.4
2,471,880	+		TX73_011330	0.72	-0.7
2,471,885	+		TX73_011330	0.73	-0.5
2,471,888	-		TX73_011330	0.74	-0.3
2,471,899	+		TX73_011330	0.76	+0.2
2,471,941	+		TX73_011330	0.83	+0.1
2,471,941	+		TX73_011330	0.83	-0.3
2,471,941	+		TX73_011330	0.83	-0.1
2,471,941	+		TX73_011330	0.83	+0.2
2,471,949	-		TX73_011330	0.84	-0.5
2,471,949	-		TX73_011330	0.84	+0.2
2,471,954	-		TX73_011330	0.85	+0.4
2,471,982	-				-0.0
2,471,984	+				-0.5
2,471,992	-				-1.0
2,471,992	-				+0.6
2,472,048	+				-0.1
2,472,048	-				+0.7
2,472,048	-				+1.0
2,472,048	-				+0.0
2,472,048	-				+0.7
2,472,056	-				+0.5
2,472,057	-				-0.3
2,472,071	-				+0.2
2,472,106	-				-0.5
2,472,112	+				+0.1
2,472,138	-				-0.6
2,472,195	+				-0.1
2,472,205	-				-0.2
2,472,210	-				-0.2
2,472,216	+				+0.3
2,472,216	-				-0.6
2,472,222	-				+0.8
2,472,239	+				+1.4
2,472,247	-				-0.5
2,472,247	-				-0.6
2,472,247	-				-0.8
2,472,252	-				-0.1
2,472,252	-				+0.4
2,472,252	-				-0.2
2,472,257	-				-0.4
2,472,307	+				-0.9
2,472,310	+		TX73_011335	0.10	+1.0
2,472,325	+		TX73_011335	0.12	-0.2
2,472,344	+		TX73_011335	0.15	-0.6
2,472,349	+		TX73_011335	0.16	+0.6
2,472,349	+		TX73_011335	0.16	+0.4
2,472,349	+		TX73_011335	0.16	-0.4
2,472,349	+		TX73_011335	0.16	-0.3
2,472,349	+		TX73_011335	0.16	-0.2
2,472,349	+		TX73_011335	0.16	-1.7
2,472,349	+		TX73_011335	0.16	-0.8
2,472,357	-		TX73_011335	0.17	+0.8
2,472,357	-		TX73_011335	0.17	-0.2
2,472,357	-		TX73_011335	0.17	-0.5
2,472,380	+		TX73_011335	0.20	-0.7
2,472,380	+		TX73_011335	0.20	+0.1
2,472,388	-		TX73_011335	0.21	+1.4
2,472,388	-		TX73_011335	0.21	-0.4
2,472,389	-		TX73_011335	0.21	+0.5
2,472,389	-		TX73_011335	0.21	-0.1
2,472,399	-		TX73_011335	0.23	-0.4
2,472,426	-		TX73_011335	0.27	+1.0