Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023375 and TX73_023380 are separated by 232 nucleotides TX73_023380 and TX73_023385 are separated by 178 nucleotides TX73_023385 and TX73_023390 are separated by 180 nucleotides
TX73_023375: TX73_023375 - OmpW family protein, at 5,080,487 to 5,081,176
_023375
TX73_023380: TX73_023380 - hypothetical protein, at 5,081,409 to 5,081,669
_023380
TX73_023385: TX73_023385 - propionyl-CoA synthetase, at 5,081,848 to 5,083,758
_023385
TX73_023390: TX73_023390 - lysozyme inhibitor LprI family protein, at 5,083,939 to 5,084,685
_023390
Position (kb) 5081
5082
5083
5084 Strain fitness (log2 ratio) -2
-1
0
1 at 5080.867 kb on - strand, within TX73_023375 at 5080.871 kb on + strand, within TX73_023375 at 5080.884 kb on - strand, within TX73_023375 at 5080.914 kb on + strand, within TX73_023375 at 5080.927 kb on - strand, within TX73_023375 at 5080.945 kb on - strand, within TX73_023375 at 5080.959 kb on - strand, within TX73_023375 at 5080.984 kb on + strand, within TX73_023375 at 5080.989 kb on + strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5080.992 kb on - strand, within TX73_023375 at 5081.010 kb on + strand, within TX73_023375 at 5081.010 kb on + strand, within TX73_023375 at 5081.018 kb on - strand, within TX73_023375 at 5081.077 kb on - strand, within TX73_023375 at 5081.077 kb on - strand, within TX73_023375 at 5081.083 kb on - strand, within TX73_023375 at 5081.136 kb on + strand at 5081.136 kb on + strand at 5081.136 kb on + strand at 5081.144 kb on - strand at 5081.144 kb on - strand at 5081.179 kb on - strand at 5081.208 kb on + strand at 5081.226 kb on + strand at 5081.227 kb on + strand at 5081.235 kb on - strand at 5081.406 kb on + strand at 5081.406 kb on + strand at 5081.406 kb on + strand at 5081.415 kb on - strand at 5081.417 kb on + strand at 5081.428 kb on + strand at 5081.473 kb on - strand, within TX73_023380 at 5081.480 kb on - strand, within TX73_023380 at 5081.480 kb on - strand, within TX73_023380 at 5081.480 kb on - strand, within TX73_023380 at 5081.487 kb on + strand, within TX73_023380 at 5081.496 kb on + strand, within TX73_023380 at 5081.497 kb on + strand, within TX73_023380 at 5081.497 kb on + strand, within TX73_023380 at 5081.504 kb on - strand, within TX73_023380 at 5081.532 kb on + strand, within TX73_023380 at 5081.545 kb on - strand, within TX73_023380 at 5081.557 kb on - strand, within TX73_023380 at 5081.567 kb on - strand, within TX73_023380 at 5081.572 kb on + strand, within TX73_023380 at 5081.572 kb on + strand, within TX73_023380 at 5081.572 kb on + strand, within TX73_023380 at 5081.580 kb on + strand, within TX73_023380 at 5081.608 kb on + strand, within TX73_023380 at 5081.618 kb on + strand, within TX73_023380 at 5081.626 kb on - strand, within TX73_023380 at 5081.629 kb on + strand, within TX73_023380 at 5081.629 kb on + strand, within TX73_023380 at 5081.639 kb on + strand, within TX73_023380 at 5081.667 kb on + strand at 5081.675 kb on - strand at 5081.685 kb on - strand at 5081.704 kb on + strand at 5081.800 kb on + strand at 5081.820 kb on + strand at 5081.820 kb on + strand at 5081.828 kb on - strand at 5081.828 kb on - strand at 5081.851 kb on + strand at 5081.858 kb on - strand at 5081.868 kb on - strand at 5081.956 kb on + strand at 5081.962 kb on + strand at 5081.970 kb on - strand at 5082.032 kb on + strand at 5082.040 kb on - strand, within TX73_023385 at 5082.097 kb on + strand, within TX73_023385 at 5082.097 kb on + strand, within TX73_023385 at 5082.113 kb on - strand, within TX73_023385 at 5082.136 kb on - strand, within TX73_023385 at 5082.146 kb on + strand, within TX73_023385 at 5082.149 kb on - strand, within TX73_023385 at 5082.198 kb on - strand, within TX73_023385 at 5082.217 kb on - strand, within TX73_023385 at 5082.225 kb on - strand, within TX73_023385 at 5082.240 kb on + strand, within TX73_023385 at 5082.302 kb on + strand, within TX73_023385 at 5082.303 kb on - strand, within TX73_023385 at 5082.347 kb on + strand, within TX73_023385 at 5082.355 kb on - strand, within TX73_023385 at 5082.470 kb on - strand, within TX73_023385 at 5082.503 kb on + strand, within TX73_023385 at 5082.505 kb on - strand, within TX73_023385 at 5082.513 kb on + strand, within TX73_023385 at 5082.513 kb on + strand, within TX73_023385 at 5082.513 kb on + strand, within TX73_023385 at 5082.521 kb on - strand, within TX73_023385 at 5082.521 kb on - strand, within TX73_023385 at 5082.521 kb on - strand, within TX73_023385 at 5082.602 kb on + strand, within TX73_023385 at 5082.614 kb on - strand, within TX73_023385 at 5082.646 kb on - strand, within TX73_023385 at 5082.786 kb on + strand, within TX73_023385 at 5082.794 kb on - strand, within TX73_023385 at 5082.802 kb on - strand, within TX73_023385 at 5082.846 kb on - strand, within TX73_023385 at 5082.848 kb on + strand, within TX73_023385 at 5082.861 kb on + strand, within TX73_023385 at 5082.865 kb on - strand, within TX73_023385 at 5082.893 kb on + strand, within TX73_023385 at 5082.923 kb on + strand, within TX73_023385 at 5082.981 kb on - strand, within TX73_023385 at 5082.986 kb on + strand, within TX73_023385 at 5083.025 kb on - strand, within TX73_023385 at 5083.135 kb on + strand, within TX73_023385 at 5083.160 kb on + strand, within TX73_023385 at 5083.271 kb on + strand, within TX73_023385 at 5083.303 kb on - strand, within TX73_023385 at 5083.310 kb on - strand, within TX73_023385 at 5083.324 kb on - strand, within TX73_023385 at 5083.328 kb on + strand, within TX73_023385 at 5083.352 kb on + strand, within TX73_023385 at 5083.365 kb on - strand, within TX73_023385 at 5083.385 kb on - strand, within TX73_023385 at 5083.486 kb on - strand, within TX73_023385 at 5083.536 kb on + strand, within TX73_023385 at 5083.628 kb on - strand at 5083.665 kb on - strand at 5083.717 kb on + strand at 5083.717 kb on + strand at 5083.717 kb on + strand at 5083.725 kb on - strand at 5083.725 kb on - strand at 5083.730 kb on + strand at 5083.752 kb on - strand at 5083.770 kb on + strand at 5083.770 kb on + strand at 5083.786 kb on - strand at 5083.814 kb on - strand at 5083.819 kb on + strand at 5083.840 kb on - strand at 5083.857 kb on + strand at 5083.862 kb on + strand at 5083.867 kb on + strand at 5083.876 kb on + strand at 5083.925 kb on + strand at 5083.960 kb on - strand at 5083.973 kb on + strand at 5084.020 kb on + strand, within TX73_023390 at 5084.053 kb on - strand, within TX73_023390 at 5084.072 kb on + strand, within TX73_023390 at 5084.082 kb on + strand, within TX73_023390 at 5084.090 kb on - strand, within TX73_023390 at 5084.107 kb on + strand, within TX73_023390 at 5084.118 kb on - strand, within TX73_023390 at 5084.159 kb on - strand, within TX73_023390 at 5084.164 kb on - strand, within TX73_023390 at 5084.177 kb on + strand, within TX73_023390 at 5084.177 kb on + strand, within TX73_023390 at 5084.185 kb on - strand, within TX73_023390 at 5084.185 kb on - strand, within TX73_023390 at 5084.186 kb on - strand, within TX73_023390 at 5084.226 kb on + strand, within TX73_023390 at 5084.231 kb on + strand, within TX73_023390 at 5084.294 kb on + strand, within TX73_023390 at 5084.302 kb on - strand, within TX73_023390 at 5084.331 kb on + strand, within TX73_023390 at 5084.338 kb on - strand, within TX73_023390 at 5084.356 kb on + strand, within TX73_023390 at 5084.364 kb on - strand, within TX73_023390 at 5084.396 kb on + strand, within TX73_023390 at 5084.399 kb on - strand, within TX73_023390 at 5084.414 kb on + strand, within TX73_023390 at 5084.440 kb on + strand, within TX73_023390 at 5084.454 kb on + strand, within TX73_023390 at 5084.476 kb on + strand, within TX73_023390 at 5084.483 kb on + strand, within TX73_023390 at 5084.528 kb on + strand, within TX73_023390 at 5084.528 kb on + strand, within TX73_023390 at 5084.533 kb on + strand, within TX73_023390 at 5084.536 kb on - strand, within TX73_023390 at 5084.536 kb on - strand, within TX73_023390 at 5084.538 kb on + strand, within TX73_023390 at 5084.538 kb on + strand, within TX73_023390 at 5084.538 kb on + strand, within TX73_023390 at 5084.546 kb on - strand, within TX73_023390 at 5084.573 kb on + strand, within TX73_023390 at 5084.678 kb on - strand at 5084.700 kb on - strand at 5084.745 kb on + strand at 5084.745 kb on + strand at 5084.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 5,080,867 - TX73_023375 0.55 -0.4 5,080,871 + TX73_023375 0.56 +0.9 5,080,884 - TX73_023375 0.58 -2.1 5,080,914 + TX73_023375 0.62 -0.6 5,080,927 - TX73_023375 0.64 -0.1 5,080,945 - TX73_023375 0.66 +0.2 5,080,959 - TX73_023375 0.68 +0.2 5,080,984 + TX73_023375 0.72 -0.5 5,080,989 + TX73_023375 0.73 -0.9 5,080,992 - TX73_023375 0.73 +0.6 5,080,992 - TX73_023375 0.73 +1.0 5,080,992 - TX73_023375 0.73 +0.1 5,081,010 + TX73_023375 0.76 +0.2 5,081,010 + TX73_023375 0.76 +0.3 5,081,018 - TX73_023375 0.77 -0.9 5,081,077 - TX73_023375 0.86 -0.9 5,081,077 - TX73_023375 0.86 +0.1 5,081,083 - TX73_023375 0.86 -0.5 5,081,136 + +0.5 5,081,136 + -2.4 5,081,136 + +0.4 5,081,144 - +0.8 5,081,144 - +0.5 5,081,179 - +0.1 5,081,208 + -0.4 5,081,226 + +0.1 5,081,227 + +0.5 5,081,235 - -1.1 5,081,406 + -1.1 5,081,406 + -0.2 5,081,406 + -1.4 5,081,415 - +0.2 5,081,417 + +0.2 5,081,428 + -1.5 5,081,473 - TX73_023380 0.25 +1.2 5,081,480 - TX73_023380 0.27 +0.2 5,081,480 - TX73_023380 0.27 -1.1 5,081,480 - TX73_023380 0.27 -0.6 5,081,487 + TX73_023380 0.30 -0.1 5,081,496 + TX73_023380 0.33 -0.1 5,081,497 + TX73_023380 0.34 +0.8 5,081,497 + TX73_023380 0.34 +0.1 5,081,504 - TX73_023380 0.36 -1.2 5,081,532 + TX73_023380 0.47 +0.1 5,081,545 - TX73_023380 0.52 +1.4 5,081,557 - TX73_023380 0.57 -0.2 5,081,567 - TX73_023380 0.61 -0.8 5,081,572 + TX73_023380 0.62 -0.7 5,081,572 + TX73_023380 0.62 +0.5 5,081,572 + TX73_023380 0.62 -0.8 5,081,580 + TX73_023380 0.66 +0.8 5,081,608 + TX73_023380 0.76 -0.0 5,081,618 + TX73_023380 0.80 +0.2 5,081,626 - TX73_023380 0.83 +0.3 5,081,629 + TX73_023380 0.84 -0.9 5,081,629 + TX73_023380 0.84 -2.0 5,081,639 + TX73_023380 0.88 -0.5 5,081,667 + +0.1 5,081,675 - -0.4 5,081,685 - +0.1 5,081,704 + +0.1 5,081,800 + -0.4 5,081,820 + -1.3 5,081,820 + +0.1 5,081,828 - +0.0 5,081,828 - -0.1 5,081,851 + +0.8 5,081,858 - +0.2 5,081,868 - +0.6 5,081,956 + -0.4 5,081,962 + -0.2 5,081,970 - +0.6 5,082,032 + +0.3 5,082,040 - TX73_023385 0.10 -0.2 5,082,097 + TX73_023385 0.13 +0.2 5,082,097 + TX73_023385 0.13 +0.7 5,082,113 - TX73_023385 0.14 +0.5 5,082,136 - TX73_023385 0.15 -0.2 5,082,146 + TX73_023385 0.16 +0.9 5,082,149 - TX73_023385 0.16 -0.0 5,082,198 - TX73_023385 0.18 -1.6 5,082,217 - TX73_023385 0.19 +0.2 5,082,225 - TX73_023385 0.20 -0.1 5,082,240 + TX73_023385 0.21 -0.1 5,082,302 + TX73_023385 0.24 +1.7 5,082,303 - TX73_023385 0.24 +0.3 5,082,347 + TX73_023385 0.26 +0.2 5,082,355 - TX73_023385 0.27 -0.5 5,082,470 - TX73_023385 0.33 +1.5 5,082,503 + TX73_023385 0.34 -0.4 5,082,505 - TX73_023385 0.34 +0.3 5,082,513 + TX73_023385 0.35 +1.4 5,082,513 + TX73_023385 0.35 +0.5 5,082,513 + TX73_023385 0.35 +1.1 5,082,521 - TX73_023385 0.35 -1.3 5,082,521 - TX73_023385 0.35 -0.2 5,082,521 - TX73_023385 0.35 +0.2 5,082,602 + TX73_023385 0.39 +0.2 5,082,614 - TX73_023385 0.40 -1.2 5,082,646 - TX73_023385 0.42 +0.0 5,082,786 + TX73_023385 0.49 -1.0 5,082,794 - TX73_023385 0.50 +0.6 5,082,802 - TX73_023385 0.50 +0.1 5,082,846 - TX73_023385 0.52 -0.0 5,082,848 + TX73_023385 0.52 +0.1 5,082,861 + TX73_023385 0.53 -0.8 5,082,865 - TX73_023385 0.53 +0.4 5,082,893 + TX73_023385 0.55 +0.2 5,082,923 + TX73_023385 0.56 +1.1 5,082,981 - TX73_023385 0.59 -0.2 5,082,986 + TX73_023385 0.60 -0.3 5,083,025 - TX73_023385 0.62 -0.3 5,083,135 + TX73_023385 0.67 +0.2 5,083,160 + TX73_023385 0.69 +1.0 5,083,271 + TX73_023385 0.74 -0.2 5,083,303 - TX73_023385 0.76 +0.6 5,083,310 - TX73_023385 0.77 +0.6 5,083,324 - TX73_023385 0.77 -0.5 5,083,328 + TX73_023385 0.77 -0.3 5,083,352 + TX73_023385 0.79 +0.1 5,083,365 - TX73_023385 0.79 -0.0 5,083,385 - TX73_023385 0.80 -1.3 5,083,486 - TX73_023385 0.86 -0.4 5,083,536 + TX73_023385 0.88 -1.1 5,083,628 - -0.3 5,083,665 - -0.4 5,083,717 + -0.1 5,083,717 + -0.3 5,083,717 + -0.0 5,083,725 - -0.1 5,083,725 - -1.1 5,083,730 + +0.1 5,083,752 - +0.2 5,083,770 + +0.0 5,083,770 + -1.5 5,083,786 - -0.9 5,083,814 - -0.6 5,083,819 + -0.1 5,083,840 - +0.3 5,083,857 + +0.6 5,083,862 + -0.1 5,083,867 + -1.3 5,083,876 + -1.2 5,083,925 + -0.0 5,083,960 - +0.4 5,083,973 + +0.1 5,084,020 + TX73_023390 0.11 -0.6 5,084,053 - TX73_023390 0.15 -1.3 5,084,072 + TX73_023390 0.18 -0.4 5,084,082 + TX73_023390 0.19 +0.0 5,084,090 - TX73_023390 0.20 +0.4 5,084,107 + TX73_023390 0.22 -1.1 5,084,118 - TX73_023390 0.24 +0.5 5,084,159 - TX73_023390 0.29 +0.3 5,084,164 - TX73_023390 0.30 -0.3 5,084,177 + TX73_023390 0.32 -0.4 5,084,177 + TX73_023390 0.32 +0.2 5,084,185 - TX73_023390 0.33 -0.1 5,084,185 - TX73_023390 0.33 +0.3 5,084,186 - TX73_023390 0.33 -0.4 5,084,226 + TX73_023390 0.38 -0.8 5,084,231 + TX73_023390 0.39 -0.5 5,084,294 + TX73_023390 0.48 -1.0 5,084,302 - TX73_023390 0.49 -1.1 5,084,331 + TX73_023390 0.52 -0.4 5,084,338 - TX73_023390 0.53 -0.2 5,084,356 + TX73_023390 0.56 -0.2 5,084,364 - TX73_023390 0.57 +0.1 5,084,396 + TX73_023390 0.61 -0.1 5,084,399 - TX73_023390 0.62 -0.2 5,084,414 + TX73_023390 0.64 -0.7 5,084,440 + TX73_023390 0.67 -0.6 5,084,454 + TX73_023390 0.69 -0.3 5,084,476 + TX73_023390 0.72 +0.1 5,084,483 + TX73_023390 0.73 -0.7 5,084,528 + TX73_023390 0.79 +0.8 5,084,528 + TX73_023390 0.79 -0.9 5,084,533 + TX73_023390 0.80 -0.4 5,084,536 - TX73_023390 0.80 +0.6 5,084,536 - TX73_023390 0.80 -0.8 5,084,538 + TX73_023390 0.80 -0.7 5,084,538 + TX73_023390 0.80 -0.9 5,084,538 + TX73_023390 0.80 +0.2 5,084,546 - TX73_023390 0.81 -1.5 5,084,573 + TX73_023390 0.85 +0.4 5,084,678 - +0.3 5,084,700 - -0.4 5,084,745 + +0.1 5,084,745 + -1.4 5,084,753 - +0.7
Or see this region's nucleotide sequence