Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_020660 and TX73_020665 overlap by 4 nucleotides TX73_020665 and TX73_020670 overlap by 4 nucleotides TX73_020670 and TX73_020675 are separated by 182 nucleotides
TX73_020660: TX73_020660 - D-sedoheptulose 7-phosphate isomerase, at 4,509,901 to 4,510,488
_020660
TX73_020665: TX73_020665 - HAD family hydrolase, at 4,510,485 to 4,511,027
_020665
TX73_020670: TX73_020670 - lipopolysaccharide heptosyltransferase I, at 4,511,024 to 4,511,968
_020670
TX73_020675: TX73_020675 - UDP-glucose 4-epimerase GalE, at 4,512,151 to 4,513,164
_020675
Position (kb) 4511
4512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4510.478 kb on - strand at 4510.763 kb on + strand, within TX73_020665 at 4510.768 kb on + strand, within TX73_020665 at 4510.798 kb on + strand, within TX73_020665 at 4510.819 kb on + strand, within TX73_020665 at 4510.843 kb on + strand, within TX73_020665 at 4510.851 kb on - strand, within TX73_020665 at 4510.853 kb on + strand, within TX73_020665 at 4510.853 kb on + strand, within TX73_020665 at 4510.853 kb on + strand, within TX73_020665 at 4510.886 kb on - strand, within TX73_020665 at 4510.980 kb on - strand at 4510.988 kb on + strand at 4512.003 kb on - strand at 4512.008 kb on - strand at 4512.107 kb on + strand at 4512.107 kb on + strand at 4512.115 kb on - strand at 4512.125 kb on + strand at 4512.140 kb on - strand at 4512.141 kb on - strand at 4512.199 kb on + strand at 4512.199 kb on + strand at 4512.199 kb on + strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.207 kb on - strand at 4512.218 kb on - strand at 4512.218 kb on - strand at 4512.235 kb on - strand at 4512.235 kb on - strand at 4512.282 kb on - strand, within TX73_020675 at 4512.288 kb on + strand, within TX73_020675 at 4512.299 kb on - strand, within TX73_020675 at 4512.391 kb on + strand, within TX73_020675 at 4512.450 kb on + strand, within TX73_020675 at 4512.453 kb on - strand, within TX73_020675 at 4512.458 kb on + strand, within TX73_020675 at 4512.468 kb on + strand, within TX73_020675 at 4512.516 kb on - strand, within TX73_020675 at 4512.521 kb on - strand, within TX73_020675 at 4512.547 kb on - strand, within TX73_020675 at 4512.568 kb on + strand, within TX73_020675 at 4512.583 kb on + strand, within TX73_020675 at 4512.586 kb on - strand, within TX73_020675 at 4512.643 kb on + strand, within TX73_020675 at 4512.691 kb on + strand, within TX73_020675 at 4512.769 kb on + strand, within TX73_020675 at 4512.779 kb on - strand, within TX73_020675 at 4512.816 kb on - strand, within TX73_020675 at 4512.892 kb on + strand, within TX73_020675 at 4512.900 kb on - strand, within TX73_020675 at 4512.935 kb on - strand, within TX73_020675
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 4,510,478 - -1.5 4,510,763 + TX73_020665 0.51 -1.1 4,510,768 + TX73_020665 0.52 +0.5 4,510,798 + TX73_020665 0.58 +0.0 4,510,819 + TX73_020665 0.62 -0.2 4,510,843 + TX73_020665 0.66 -0.1 4,510,851 - TX73_020665 0.67 -0.9 4,510,853 + TX73_020665 0.68 -0.3 4,510,853 + TX73_020665 0.68 +0.1 4,510,853 + TX73_020665 0.68 +0.1 4,510,886 - TX73_020665 0.74 +0.4 4,510,980 - +0.1 4,510,988 + +0.7 4,512,003 - +0.0 4,512,008 - +0.5 4,512,107 + +0.1 4,512,107 + +0.5 4,512,115 - -0.2 4,512,125 + +0.5 4,512,140 - +1.1 4,512,141 - +2.2 4,512,199 + +0.4 4,512,199 + -0.2 4,512,199 + +0.2 4,512,207 - +1.0 4,512,207 - +0.6 4,512,207 - +1.1 4,512,207 - +1.1 4,512,218 - +1.0 4,512,218 - +0.2 4,512,235 - +1.6 4,512,235 - +0.2 4,512,282 - TX73_020675 0.13 +0.6 4,512,288 + TX73_020675 0.14 -0.1 4,512,299 - TX73_020675 0.15 +0.8 4,512,391 + TX73_020675 0.24 -0.8 4,512,450 + TX73_020675 0.29 +0.2 4,512,453 - TX73_020675 0.30 -0.7 4,512,458 + TX73_020675 0.30 +0.9 4,512,468 + TX73_020675 0.31 +0.9 4,512,516 - TX73_020675 0.36 +0.2 4,512,521 - TX73_020675 0.36 +0.1 4,512,547 - TX73_020675 0.39 +1.2 4,512,568 + TX73_020675 0.41 +0.4 4,512,583 + TX73_020675 0.43 +0.3 4,512,586 - TX73_020675 0.43 -2.1 4,512,643 + TX73_020675 0.49 +0.6 4,512,691 + TX73_020675 0.53 +0.1 4,512,769 + TX73_020675 0.61 +1.4 4,512,779 - TX73_020675 0.62 -0.5 4,512,816 - TX73_020675 0.66 -0.2 4,512,892 + TX73_020675 0.73 -0.6 4,512,900 - TX73_020675 0.74 -0.3 4,512,935 - TX73_020675 0.77 +1.1
Or see this region's nucleotide sequence