Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020300

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
4,417,129	-		TX73_020295	0.82	+0.4
4,417,131	+		TX73_020295	0.82	+0.6
4,417,134	-		TX73_020295	0.83	+0.3
4,417,182	-		TX73_020295	0.84	-0.7
4,417,213	+		TX73_020295	0.86	+0.2
4,417,221	-		TX73_020295	0.86	-0.6
4,417,221	-		TX73_020295	0.86	-2.3
4,417,285	+		TX73_020295	0.88	-0.2
4,417,285	+		TX73_020295	0.88	+1.0
4,417,337	+				-0.6
4,417,345	-				+0.4
4,417,345	-				-0.6
4,417,355	+				+1.3
4,417,471	+				+0.3
4,417,471	+				-0.7
4,417,481	+				-0.9
4,417,481	+				-0.2
4,417,489	-				-2.1
4,417,518	-				-0.1
4,417,540	+				+0.9
4,417,543	-				-1.7
4,417,579	-				-0.1
4,417,582	+				-0.0
4,417,594	-				-1.3
4,417,606	-				+0.3
4,417,606	-				+0.6
4,417,606	-				-0.0
4,417,606	-				-0.2
4,417,606	-				+0.1
4,417,672	-				+0.3
4,417,672	-				-0.5
4,417,697	-				-0.3
4,417,706	+				+0.3
4,417,706	+				+0.1
4,417,706	+				+0.5
4,417,714	-				+0.0
4,417,714	-				+0.0
4,417,714	-				+0.5
4,417,714	-				+0.5
4,417,714	-				+0.8
4,417,714	-				-1.0
4,417,726	-				+0.8
4,417,728	+				-0.2
4,417,731	+				-0.7
4,417,733	+				+0.9
4,417,744	+				-0.4
4,417,744	+				+0.5
4,417,744	-				-1.9
4,417,752	-				-0.5
4,417,763	+				+0.6
4,417,772	-				-0.4
4,417,788	-				+0.3
4,417,794	+				+0.2
4,417,795	-				-1.0
4,417,805	-				-0.7
4,417,894	-				+0.1
4,417,928	+				+0.5
4,417,959	-				+0.3
4,417,968	+				+0.5
4,417,968	-				-0.0
4,417,987	-				+0.6
4,417,996	-				-1.6
4,418,034	+				+0.8
4,418,045	+				+0.2
4,418,054	-				-1.0
4,418,055	-				-0.2
4,418,056	+				+0.2
4,418,056	+				-0.8
4,418,056	+				+0.3
4,418,056	+				+0.6
4,418,064	-				-0.7
4,418,064	-				+0.2
4,418,064	-				-0.6
4,418,064	-				-0.1
4,418,064	-				+0.3
4,418,064	-				+0.2
4,418,064	-				-1.2
4,418,064	-				+0.4
4,418,077	+				-0.1
4,418,085	-				-1.0
4,418,140	-				+1.0
4,418,140	-				+0.4
4,418,158	+				-0.2
4,418,158	+				-0.0
4,418,163	+				-0.4
4,418,165	-				+0.2
4,418,165	-				+0.6
4,418,166	-				-0.2
4,418,167	+				-0.4
4,418,168	+				-0.2
4,418,175	-				+0.0
4,418,184	+				-0.8
4,418,189	+				-0.7
4,418,210	-				-0.2
4,418,219	+				+0.1
4,418,219	+				+0.1
4,418,256	-				+0.8
4,418,266	-				-1.1
4,418,348	+		TX73_020300	0.11	+1.5
4,418,369	-		TX73_020300	0.12	+0.8
4,418,395	-		TX73_020300	0.13	-0.3
4,418,448	-		TX73_020300	0.15	-0.1
4,418,448	-		TX73_020300	0.15	+0.2
4,418,473	+		TX73_020300	0.17	+0.3
4,418,473	+		TX73_020300	0.17	-0.7
4,418,473	+		TX73_020300	0.17	+0.7
4,418,481	-		TX73_020300	0.17	+0.3
4,418,489	+		TX73_020300	0.17	+0.2
4,418,489	+		TX73_020300	0.17	+1.0
4,418,514	-		TX73_020300	0.18	-0.2
4,418,585	+		TX73_020300	0.22	-1.2
4,418,608	+		TX73_020300	0.23	-0.4
4,418,618	+		TX73_020300	0.23	+0.2
4,418,623	+		TX73_020300	0.24	-0.4
4,418,626	-		TX73_020300	0.24	-0.2
4,418,639	-		TX73_020300	0.24	+1.5
4,418,671	+		TX73_020300	0.26	-0.4
4,418,679	+		TX73_020300	0.26	-0.4
4,418,705	-		TX73_020300	0.27	-0.3
4,418,724	+		TX73_020300	0.28	+0.1
4,418,732	-		TX73_020300	0.29	-0.7
4,418,732	-		TX73_020300	0.29	-2.2
4,418,732	-		TX73_020300	0.29	+1.2
4,418,762	-		TX73_020300	0.30	+0.3
4,418,762	-		TX73_020300	0.30	+0.3
4,418,799	+		TX73_020300	0.32	+1.0
4,418,870	+		TX73_020300	0.35	-0.1
4,418,870	+		TX73_020300	0.35	+1.1
4,418,878	-		TX73_020300	0.35	-0.0
4,418,878	-		TX73_020300	0.35	-2.3
4,418,907	-		TX73_020300	0.37	+0.2
4,418,915	+		TX73_020300	0.37	-0.7
4,418,920	+		TX73_020300	0.37	-0.1
4,418,971	+		TX73_020300	0.40	-0.9
4,418,971	+		TX73_020300	0.40	+0.5
4,418,979	-		TX73_020300	0.40	-0.3
4,418,995	-		TX73_020300	0.41	+0.1
4,419,047	-		TX73_020300	0.43	+0.7
4,419,049	-		TX73_020300	0.43	-0.6
4,419,061	+		TX73_020300	0.44	-0.2
4,419,079	+		TX73_020300	0.45	+0.3
4,419,107	-		TX73_020300	0.46	-0.3
4,419,145	-		TX73_020300	0.48	+0.3
4,419,245	+		TX73_020300	0.52	-1.0
4,419,255	+		TX73_020300	0.53	+0.2
4,419,255	+		TX73_020300	0.53	+0.7
4,419,277	+		TX73_020300	0.54	-0.8
4,419,365	+		TX73_020300	0.58	+0.8
4,419,410	+		TX73_020300	0.60	+0.8
4,419,418	-		TX73_020300	0.61	+0.9
4,419,418	-		TX73_020300	0.61	-0.7
4,419,451	+		TX73_020300	0.62	-1.1
4,419,456	+		TX73_020300	0.62	+0.2
4,419,456	+		TX73_020300	0.62	-0.8
4,419,461	+		TX73_020300	0.63	-0.5
4,419,464	-		TX73_020300	0.63	-0.7
4,419,464	-		TX73_020300	0.63	-0.1
4,419,578	-		TX73_020300	0.68	-0.9
4,419,578	-		TX73_020300	0.68	-0.5
4,419,578	-		TX73_020300	0.68	+0.3
4,419,669	+		TX73_020300	0.72	+0.2
4,419,798	-		TX73_020300	0.78	+1.1
4,419,838	+		TX73_020300	0.80	+0.7
4,419,843	+		TX73_020300	0.80	+1.0
4,419,843	+		TX73_020300	0.80	+0.6
4,419,851	-		TX73_020300	0.81	+0.6
4,419,875	+		TX73_020300	0.82	+0.3
4,419,891	-		TX73_020300	0.83	-0.5
4,419,891	-		TX73_020300	0.83	-0.1
4,419,912	-		TX73_020300	0.84	+0.7
4,419,912	-		TX73_020300	0.84	+0.1
4,419,912	-		TX73_020300	0.84	-0.2
4,419,912	-		TX73_020300	0.84	-0.2
4,419,943	+		TX73_020300	0.85	+1.2
4,419,953	+		TX73_020300	0.85	+0.1
4,419,956	-		TX73_020300	0.86	+0.5
4,419,961	-		TX73_020300	0.86	+2.2
4,419,964	+		TX73_020300	0.86	-0.1
4,419,983	+		TX73_020300	0.87	+0.5
4,419,991	-		TX73_020300	0.87	+0.3
4,420,009	+		TX73_020300	0.88	+0.1
4,420,009	+		TX73_020300	0.88	+1.1
4,420,012	-		TX73_020300	0.88	+0.6
4,420,017	-		TX73_020300	0.88	+0.7
4,420,025	-		TX73_020300	0.89	-0.3
4,420,025	-		TX73_020300	0.89	-0.4
4,420,161	+				-0.1
4,420,161	+				+0.6
4,420,169	-				+0.2
4,420,169	-				-0.1
4,420,184	-				-0.1
4,420,239	+				+0.0
4,420,241	-				-0.2
4,420,241	-				-0.4
4,420,314	+				-0.1
4,420,355	+				-0.1
4,420,355	+				-0.8
4,420,460	-		TX73_020305	0.10	+0.9
4,420,617	-		TX73_020305	0.19	-1.4
4,420,651	+		TX73_020305	0.21	-0.4
4,420,718	+		TX73_020305	0.24	-0.7
4,420,726	-		TX73_020305	0.25	+0.2
4,420,756	+		TX73_020305	0.27	+0.8
4,420,761	+		TX73_020305	0.27	+0.1
4,420,761	+		TX73_020305	0.27	-0.3
4,420,764	-		TX73_020305	0.27	-0.7
4,420,769	-		TX73_020305	0.27	+0.4
4,420,774	+		TX73_020305	0.28	-0.7
4,420,777	-		TX73_020305	0.28	+0.9
4,420,810	+		TX73_020305	0.30	+0.5
4,420,810	+		TX73_020305	0.30	-0.4
4,420,818	-		TX73_020305	0.30	-0.5
4,420,818	-		TX73_020305	0.30	-1.0
4,420,851	-		TX73_020305	0.32	+1.2
4,420,865	-		TX73_020305	0.33	+0.4
4,420,872	+		TX73_020305	0.33	+0.6
4,420,902	-		TX73_020305	0.35	+0.9
4,420,902	-		TX73_020305	0.35	-1.3
4,420,944	+		TX73_020305	0.37	+0.0
4,420,981	+		TX73_020305	0.39	+0.1
4,420,981	+		TX73_020305	0.39	+0.2
4,420,984	-		TX73_020305	0.39	-1.0
4,420,989	-		TX73_020305	0.39	-1.1
4,421,031	+		TX73_020305	0.42	+0.6
4,421,033	+		TX73_020305	0.42	-0.1
4,421,034	-		TX73_020305	0.42	+0.1
4,421,034	-		TX73_020305	0.42	+0.3
4,421,041	-		TX73_020305	0.42	+0.1
4,421,043	+		TX73_020305	0.42	-0.0
4,421,102	-		TX73_020305	0.46	+0.3
4,421,179	-		TX73_020305	0.50	+0.6
4,421,265	+		TX73_020305	0.55	-0.3
4,421,265	+		TX73_020305	0.55	-1.3