Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017685

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
3,862,019	+		TX73_017680	0.29	-0.2
3,862,031	+		TX73_017680	0.30	-0.4
3,862,053	+		TX73_017680	0.33	+0.7
3,862,091	-		TX73_017680	0.38	+0.5
3,862,133	-		TX73_017680	0.44	-0.4
3,862,135	-		TX73_017680	0.44	-0.9
3,862,142	+		TX73_017680	0.45	-0.1
3,862,144	+		TX73_017680	0.45	+0.6
3,862,159	-		TX73_017680	0.47	+0.7
3,862,188	-		TX73_017680	0.51	+0.4
3,862,202	+		TX73_017680	0.53	+0.4
3,862,205	-		TX73_017680	0.53	+0.5
3,862,205	-		TX73_017680	0.53	+0.4
3,862,207	+		TX73_017680	0.53	+0.7
3,862,212	+		TX73_017680	0.54	+0.5
3,862,230	-		TX73_017680	0.56	+0.2
3,862,230	-		TX73_017680	0.56	+0.4
3,862,230	-		TX73_017680	0.56	+0.3
3,862,243	-		TX73_017680	0.58	-0.4
3,862,245	-		TX73_017680	0.58	+0.2
3,862,259	+		TX73_017680	0.60	+0.1
3,862,267	-		TX73_017680	0.61	+0.5
3,862,292	-		TX73_017680	0.64	+0.4
3,862,315	+		TX73_017680	0.67	+0.6
3,862,342	-		TX73_017680	0.71	+1.0
3,862,357	-		TX73_017680	0.73	+1.1
3,862,373	+		TX73_017680	0.75	-0.2
3,862,381	-		TX73_017680	0.76	-0.0
3,862,386	-		TX73_017680	0.77	+0.2
3,862,392	+		TX73_017680	0.78	+1.5
3,862,400	-		TX73_017680	0.79	+0.3
3,862,402	-		TX73_017680	0.79	+1.3
3,862,404	-		TX73_017680	0.79	-0.5
3,862,440	+		TX73_017680	0.84	+0.6
3,862,451	+		TX73_017680	0.85	+0.4
3,862,451	+		TX73_017680	0.85	+0.5
3,862,455	+		TX73_017680	0.86	-0.3
3,862,458	-		TX73_017680	0.86	+2.2
3,862,459	-		TX73_017680	0.86	-0.1
3,862,459	-		TX73_017680	0.86	+0.7
3,862,459	-		TX73_017680	0.86	+0.2
3,862,463	-		TX73_017680	0.87	-0.0
3,862,486	-		TX73_017680	0.90	-0.7
3,862,496	-				-0.0
3,862,501	-				+0.2
3,862,552	+				+0.1
3,862,555	+				+0.1
3,862,583	+				-0.1
3,862,588	+				+0.1
3,862,596	-				-0.2
3,862,598	-				+0.2
3,862,624	-				-0.7
3,862,662	-				+0.5
3,862,662	-				-1.5
3,862,662	-				-0.6
3,862,687	+				+0.6
3,862,687	+				+0.1
3,862,687	+				+0.2
3,862,695	-				+0.6
3,862,697	-				+0.1
3,862,718	-				-0.2
3,862,739	+				+0.7
3,862,739	+				+0.1
3,862,752	-				-0.6
3,862,763	-				+0.5
3,862,767	+				-0.3
3,862,767	+				-0.3
3,862,773	-				-0.5
3,862,775	-				+1.0
3,862,775	-				-0.3
3,862,777	+				-0.3
3,862,777	+				-0.3
3,862,785	-				+0.3
3,862,785	-				+0.9
3,862,786	-				-0.2
3,862,800	+				-0.8
3,862,806	-				+0.5
3,862,806	-				+0.4
3,862,806	-				+0.9
3,862,806	-				+0.0
3,862,806	-				+0.1
3,862,807	-				-0.6
3,862,841	-				-0.4
3,862,866	-				+0.7
3,862,884	+				-1.7
3,862,903	-				+0.7
3,862,955	+				-0.5
3,862,970	-				+0.5
3,862,988	-				-0.9
3,862,990	+				-0.4
3,863,032	+				+0.1
3,863,036	+				-0.3
3,863,062	+				+0.3
3,863,080	-		TX73_017685	0.12	-1.0
3,863,092	-		TX73_017685	0.14	+0.0
3,863,125	+		TX73_017685	0.19	-0.1
3,863,177	+		TX73_017685	0.28	-2.2
3,863,194	+		TX73_017685	0.31	+0.8
3,863,246	+		TX73_017685	0.39	+0.4
3,863,253	+		TX73_017685	0.40	+0.5
3,863,258	+		TX73_017685	0.41	+0.1
3,863,271	+		TX73_017685	0.43	+0.1
3,863,271	+		TX73_017685	0.43	-2.2
3,863,277	+		TX73_017685	0.44	+0.5
3,863,279	-		TX73_017685	0.45	+0.3
3,863,296	+		TX73_017685	0.47	-0.6
3,863,319	-		TX73_017685	0.51	+0.4
3,863,334	+		TX73_017685	0.54	+0.3
3,863,342	-		TX73_017685	0.55	-0.2
3,863,342	-		TX73_017685	0.55	+0.0
3,863,362	+		TX73_017685	0.58	-0.7
3,863,362	+		TX73_017685	0.58	-0.2
3,863,364	+		TX73_017685	0.59	+0.7
3,863,375	-		TX73_017685	0.60	-0.1
3,863,380	-		TX73_017685	0.61	-0.3
3,863,393	+		TX73_017685	0.63	-0.2
3,863,403	-		TX73_017685	0.65	+0.5
3,863,425	-		TX73_017685	0.69	-0.1
3,863,425	-		TX73_017685	0.69	+0.2
3,863,443	+		TX73_017685	0.72	+0.2
3,863,471	+		TX73_017685	0.76	+0.7
3,863,471	+		TX73_017685	0.76	+0.6
3,863,474	-		TX73_017685	0.77	-0.2
3,863,479	-		TX73_017685	0.78	+0.2
3,863,479	-		TX73_017685	0.78	-2.3
3,863,498	-		TX73_017685	0.81	+0.0
3,863,498	-		TX73_017685	0.81	+0.3
3,863,500	-		TX73_017685	0.81	+0.5
3,863,509	-		TX73_017685	0.83	+0.2
3,863,528	+		TX73_017685	0.86	-0.1
3,863,546	+		TX73_017685	0.89	+0.3
3,863,547	+		TX73_017685	0.89	-0.3
3,863,560	-				-0.5
3,863,596	-				+0.2
3,863,596	-				+0.9
3,863,613	+				-0.1
3,863,613	+				-0.2
3,863,613	+				-0.8
3,863,618	+				-0.8
3,863,618	+				+0.1
3,863,628	+				+0.2
3,863,635	+				+0.9
3,863,636	-				-0.0
3,863,636	-				+0.5
3,863,636	-				+1.0
3,863,646	+				+0.4
3,863,672	+				+1.5
3,863,677	+				+0.3
3,863,680	+				-1.4
3,863,684	+				+0.3
3,863,687	-				+0.6
3,863,694	+				+0.8
3,863,694	+				-0.1
3,863,696	+				+0.5
3,863,697	-				+0.2
3,863,697	-				+0.2
3,863,697	-				-0.6
3,863,702	-				+0.9
3,863,702	-				+1.1
3,863,702	-				+0.2
3,863,702	-				+0.9
3,863,702	-				-1.7
3,863,702	-				+0.3
3,863,703	+				+0.1
3,863,713	+				+0.3
3,863,724	+				+0.3
3,863,726	+				-1.4
3,863,732	-				-1.8
3,863,734	+				+0.5
3,863,734	-				-1.4
3,863,748	+				-0.5
3,863,764	+				-0.7
3,863,772	-				+0.9
3,863,782	-				+1.1
3,863,885	+				+0.4
3,863,901	-				+1.1
3,863,901	-				+1.8
3,863,903	+				+1.2
3,863,917	-				+1.9
3,863,920	+				-1.0
3,863,924	-				+2.1
3,863,946	+				-0.2
3,863,948	-				+0.3
3,863,951	+				+0.7
3,863,962	-				+0.4
3,863,979	-				+1.5
3,863,981	+				+2.2
3,863,991	-				+3.0
3,864,000	-				+2.6
3,864,002	+				+2.3
3,864,011	+		TX73_017690	0.10	+3.3
3,864,018	+		TX73_017690	0.12	+3.0
3,864,018	+		TX73_017690	0.12	+2.4
3,864,018	+		TX73_017690	0.12	+2.3
3,864,026	-		TX73_017690	0.13	+1.9
3,864,028	+		TX73_017690	0.13	+2.5
3,864,028	+		TX73_017690	0.13	+2.5
3,864,028	+		TX73_017690	0.13	+3.2
3,864,036	-		TX73_017690	0.14	+2.2
3,864,044	+		TX73_017690	0.16	+2.7
3,864,051	+		TX73_017690	0.17	+2.7
3,864,088	+		TX73_017690	0.23	+3.0
3,864,102	+		TX73_017690	0.25	+2.2
3,864,110	-		TX73_017690	0.26	+3.6
3,864,137	-		TX73_017690	0.31	+2.1
3,864,142	-		TX73_017690	0.32	+2.9
3,864,162	-		TX73_017690	0.35	+2.7
3,864,212	+		TX73_017690	0.43	+2.3
3,864,232	-		TX73_017690	0.46	+2.7
3,864,252	+		TX73_017690	0.49	+3.0
3,864,265	+		TX73_017690	0.51	+1.5
3,864,271	-		TX73_017690	0.52	+2.0
3,864,277	+		TX73_017690	0.53	+2.5
3,864,299	-		TX73_017690	0.57	+3.1
3,864,311	+		TX73_017690	0.59	+3.5
3,864,314	-		TX73_017690	0.59	+1.5
3,864,341	+		TX73_017690	0.64	+2.8
3,864,352	-		TX73_017690	0.65	+2.1
3,864,354	-		TX73_017690	0.66	+2.0
3,864,384	-		TX73_017690	0.71	+2.7
3,864,392	-		TX73_017690	0.72	+3.0
3,864,411	+		TX73_017690	0.75	+3.0
3,864,452	+		TX73_017690	0.81	+4.3
3,864,460	-		TX73_017690	0.83	+2.3
3,864,465	-		TX73_017690	0.84	+5.1
3,864,482	-		TX73_017690	0.86	+2.3
3,864,516	-				+2.5
3,864,544	-				-0.1
3,864,545	+				+0.2
3,864,555	+				-0.6
3,864,558	-				-0.0
3,864,563	-				+0.7
3,864,567	+				+0.5
3,864,568	-				-0.7
3,864,568	-				-1.3
3,864,570	-				-0.3
3,864,573	-				-0.2
3,864,575	-				+0.6
3,864,598	+				-0.2
3,864,613	-				-0.3
3,864,614	+				-0.7