Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013035

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
2,863,516	+				-0.2
2,863,526	-				-1.9
2,863,539	+		TX73_013030	0.11	+0.1
2,863,548	+		TX73_013030	0.13	+0.7
2,863,567	-		TX73_013030	0.18	+0.5
2,863,572	-		TX73_013030	0.19	-0.2
2,863,572	-		TX73_013030	0.19	-0.1
2,863,587	+		TX73_013030	0.22	-1.1
2,863,595	-		TX73_013030	0.24	+0.5
2,863,599	-		TX73_013030	0.25	-0.7
2,863,601	-		TX73_013030	0.25	+0.4
2,863,603	-		TX73_013030	0.26	+0.4
2,863,627	-		TX73_013030	0.31	+0.0
2,863,632	+		TX73_013030	0.32	-0.1
2,863,635	-		TX73_013030	0.33	+0.9
2,863,650	+		TX73_013030	0.36	+0.2
2,863,671	-		TX73_013030	0.41	+0.7
2,863,711	+		TX73_013030	0.50	-1.0
2,863,716	+		TX73_013030	0.51	+0.0
2,863,728	-		TX73_013030	0.53	+0.6
2,863,745	-		TX73_013030	0.57	+1.4
2,863,754	-		TX73_013030	0.59	-0.6
2,863,755	+		TX73_013030	0.59	+0.2
2,863,765	+		TX73_013030	0.62	-1.1
2,863,774	-		TX73_013030	0.64	+0.7
2,863,784	+		TX73_013030	0.66	-0.1
2,863,791	+		TX73_013030	0.67	-1.2
2,863,804	+		TX73_013030	0.70	+0.5
2,863,836	-		TX73_013030	0.77	-1.3
2,863,836	-		TX73_013030	0.77	+0.2
2,863,841	-		TX73_013030	0.78	+0.8
2,863,846	+		TX73_013030	0.80	-0.8
2,863,856	+		TX73_013030	0.82	+1.1
2,863,856	+		TX73_013030	0.82	+0.7
2,863,856	+		TX73_013030	0.82	-0.1
2,863,856	+		TX73_013030	0.82	+0.9
2,863,856	+		TX73_013030	0.82	+0.7
2,863,856	+		TX73_013030	0.82	+1.8
2,863,856	+		TX73_013030	0.82	+1.0
2,863,864	-		TX73_013030	0.84	-0.3
2,863,864	-		TX73_013030	0.84	+0.2
2,863,864	-		TX73_013030	0.84	+0.1
2,863,864	-		TX73_013030	0.84	+1.1
2,863,864	-		TX73_013030	0.84	-0.4
2,863,864	-		TX73_013030	0.84	+0.2
2,863,864	-		TX73_013030	0.84	+0.6
2,863,864	-		TX73_013030	0.84	+0.1
2,863,864	-		TX73_013030	0.84	-1.2
2,863,864	-		TX73_013030	0.84	-0.1
2,863,884	+		TX73_013030	0.88	-0.1
2,863,902	-				-0.1
2,863,921	+				+0.7
2,863,921	+				+0.4
2,863,928	-				-0.1
2,863,929	-				-0.2
2,863,932	+				+1.1
2,863,932	+				-1.4
2,863,943	+				+0.3
2,863,949	-				-0.6
2,863,952	-				+0.6
2,864,006	+				+0.3
2,864,026	+				-0.3
2,864,029	-				-0.2
2,864,033	+				+1.8
2,864,041	-				+0.0
2,864,041	-				-0.4
2,864,067	+				-0.3
2,864,068	+				-0.8
2,864,068	+				-0.3
2,864,068	-				-2.1
2,864,075	-				+0.6
2,864,076	-				-1.3
2,864,076	-				-0.0
2,864,076	-				-0.5
2,864,081	+				-0.7
2,864,081	+				+0.1
2,864,082	+				-0.0
2,864,082	+				-1.0
2,864,089	+				-1.5
2,864,089	-				+0.1
2,864,089	-				-0.3
2,864,089	-				-1.8
2,864,090	-				+0.1
2,864,090	-				-0.1
2,864,090	-				-0.1
2,864,097	-				+0.2
2,864,097	-				+0.6
2,864,108	-				+0.1
2,864,109	+				+0.5
2,864,112	+				-0.6
2,864,127	+				-0.1
2,864,127	+				-0.4
2,864,130	-				-0.8
2,864,134	+				+0.4
2,864,135	-				+0.4
2,864,142	-				-0.1
2,864,142	-				-0.2
2,864,164	+				-0.1
2,864,164	-				-1.1
2,864,172	-				+0.0
2,864,182	-				-0.2
2,864,194	+				-0.7
2,864,201	-				-1.0
2,864,215	+				-1.2
2,864,216	+				-0.1
2,864,216	+				-0.3
2,864,216	+				+0.3
2,864,224	-				+0.4
2,864,224	-				-0.7
2,864,224	-				-1.2
2,864,224	-				-1.2
2,864,232	-				-1.3
2,864,234	+				-0.4
2,864,241	-				-0.0
2,864,242	+				+0.1
2,864,251	-				-0.6
2,864,251	-				-0.6
2,864,264	-				+0.3
2,864,264	-				-1.2
2,864,264	-				+0.3
2,864,269	-				-0.8
2,864,314	+				+0.3
2,864,368	-				-0.2
2,864,385	+				+0.5
2,864,385	+				-1.3
2,864,390	+				-0.5
2,864,398	-				+0.6
2,864,437	+				-0.9
2,864,453	-				-0.3
2,864,455	+				+0.9
2,864,463	-				+0.8
2,864,468	-				-0.4
2,864,473	-				-0.4
2,864,499	+				-1.2
2,864,510	-		TX73_013035	0.10	-0.5
2,864,510	-		TX73_013035	0.10	-0.7
2,864,538	-		TX73_013035	0.14	-3.1
2,864,539	-		TX73_013035	0.14	-0.0
2,864,570	-		TX73_013035	0.18	-1.0
2,864,585	+		TX73_013035	0.20	-0.4
2,864,590	+		TX73_013035	0.21	-0.9
2,864,590	+		TX73_013035	0.21	+0.2
2,864,617	-		TX73_013035	0.25	-0.3
2,864,655	+		TX73_013035	0.30	-0.8
2,864,655	+		TX73_013035	0.30	-0.1
2,864,663	-		TX73_013035	0.31	-0.1
2,864,663	-		TX73_013035	0.31	+0.8
2,864,663	-		TX73_013035	0.31	-0.3
2,864,663	-		TX73_013035	0.31	+0.1
2,864,685	+		TX73_013035	0.33	-1.4
2,864,689	+		TX73_013035	0.34	-1.0
2,864,697	-		TX73_013035	0.35	-1.8
2,864,697	-		TX73_013035	0.35	+0.2
2,864,711	+		TX73_013035	0.37	-0.1
2,864,711	+		TX73_013035	0.37	+0.5
2,864,711	+		TX73_013035	0.37	-0.9
2,864,711	+		TX73_013035	0.37	+0.1
2,864,711	+		TX73_013035	0.37	-0.5
2,864,714	-		TX73_013035	0.37	-1.6
2,864,716	-		TX73_013035	0.38	-0.8
2,864,719	-		TX73_013035	0.38	-0.4
2,864,719	-		TX73_013035	0.38	+0.5
2,864,719	-		TX73_013035	0.38	+0.4
2,864,719	-		TX73_013035	0.38	-0.3
2,864,719	-		TX73_013035	0.38	-0.2
2,864,719	-		TX73_013035	0.38	-0.7
2,864,719	-		TX73_013035	0.38	-0.3
2,864,719	-		TX73_013035	0.38	-1.5
2,864,726	+		TX73_013035	0.39	+0.1
2,864,732	+		TX73_013035	0.40	+1.1
2,864,789	-		TX73_013035	0.47	+0.5
2,864,794	+		TX73_013035	0.48	-0.3
2,864,809	-		TX73_013035	0.50	+0.4
2,864,813	+		TX73_013035	0.50	-0.4
2,864,813	+		TX73_013035	0.50	+0.3
2,864,813	+		TX73_013035	0.50	-0.4
2,864,818	+		TX73_013035	0.51	-0.5
2,864,821	-		TX73_013035	0.51	-0.1
2,864,823	-		TX73_013035	0.52	+0.3
2,864,826	-		TX73_013035	0.52	+0.1
2,864,826	-		TX73_013035	0.52	+0.3
2,864,838	-		TX73_013035	0.54	-1.8
2,864,845	+		TX73_013035	0.54	-0.6
2,864,853	+		TX73_013035	0.56	+0.2
2,864,896	+		TX73_013035	0.61	-0.1
2,864,896	+		TX73_013035	0.61	-1.8
2,864,900	+		TX73_013035	0.62	-1.1
2,864,900	+		TX73_013035	0.62	-0.3
2,864,900	+		TX73_013035	0.62	-0.8
2,864,900	+		TX73_013035	0.62	-0.6
2,864,900	+		TX73_013035	0.62	-1.2
2,864,900	+		TX73_013035	0.62	+1.7
2,864,900	+		TX73_013035	0.62	+1.6
2,864,900	+		TX73_013035	0.62	+0.7
2,864,900	+		TX73_013035	0.62	+0.8
2,864,908	-		TX73_013035	0.63	-0.8
2,864,908	-		TX73_013035	0.63	-0.1
2,864,908	-		TX73_013035	0.63	+0.3
2,864,924	+		TX73_013035	0.65	-1.4
2,864,929	+		TX73_013035	0.65	-1.2
2,864,944	+		TX73_013035	0.67	-0.6
2,864,954	+		TX73_013035	0.69	-0.5
2,864,954	+		TX73_013035	0.69	+0.2
2,864,962	+		TX73_013035	0.70	-0.5
2,864,962	+		TX73_013035	0.70	-0.1
2,864,971	-		TX73_013035	0.71	+0.1
2,864,971	-		TX73_013035	0.71	+0.6
2,864,989	+		TX73_013035	0.73	+0.9
2,864,999	+		TX73_013035	0.75	+0.7
2,865,006	+		TX73_013035	0.76	-0.4
2,865,019	-		TX73_013035	0.77	+1.4
2,865,019	-		TX73_013035	0.77	-0.1
2,865,033	+		TX73_013035	0.79	-0.0
2,865,041	-		TX73_013035	0.80	+1.4
2,865,103	+		TX73_013035	0.88	+0.4
2,865,103	+		TX73_013035	0.88	-0.0
2,865,106	-		TX73_013035	0.89	+0.4
2,865,108	+		TX73_013035	0.89	-0.5
2,865,111	-		TX73_013035	0.89	-0.2
2,865,111	-		TX73_013035	0.89	+0.4
2,865,138	+				+0.1
2,865,155	+				+0.2
2,865,155	-				-0.1
2,865,166	+				+0.2
2,865,166	+				+0.1
2,865,166	+				-1.0
2,865,166	+				-0.0
2,865,174	-				+0.8
2,865,174	-				+0.5
2,865,174	-				+0.7
2,865,174	-				-0.4
2,865,223	+				+0.1
2,865,223	+				-0.2
2,865,231	-				+1.3
2,865,231	-				+0.7
2,865,231	-				-0.5
2,865,304	+				+0.0
2,865,304	+				+1.3
2,865,309	+				+2.3
2,865,309	+				+1.7
2,865,312	-				+1.2
2,865,312	-				+0.7
2,865,317	-				+0.7
2,865,317	-				+3.0
2,865,319	+				+0.7
2,865,319	+				+1.3
2,865,326	+				+2.0
2,865,327	-				+0.9
2,865,327	-				+1.3
2,865,385	+				+1.2
2,865,385	+				+1.1
2,865,385	+				+0.5
2,865,385	+				+0.1
2,865,385	-				+2.0
2,865,393	-				+1.1
2,865,393	-				+1.3
2,865,417	+				+1.4
2,865,452	+				+1.7
2,865,455	-				+1.0
2,865,457	+				-0.3
2,865,457	+				+1.2
2,865,472	+		TX73_013040	0.11	+1.4
2,865,472	+		TX73_013040	0.11	+1.5
2,865,480	-		TX73_013040	0.12	+1.9
2,865,510	-		TX73_013040	0.16	+1.1
2,865,515	-		TX73_013040	0.17	+0.8
2,865,526	+		TX73_013040	0.19	+1.7
2,865,526	+		TX73_013040	0.19	+2.0
2,865,543	+		TX73_013040	0.21	+0.6
2,865,543	+		TX73_013040	0.21	+1.5
2,865,543	+		TX73_013040	0.21	+1.5
2,865,568	-		TX73_013040	0.24	+1.0
2,865,568	-		TX73_013040	0.24	+1.6
2,865,570	+		TX73_013040	0.25	+1.3
2,865,581	+		TX73_013040	0.26	+2.2
2,865,593	+		TX73_013040	0.28	+1.7
2,865,606	-		TX73_013040	0.30	+0.4
2,865,608	+		TX73_013040	0.30	+1.2
2,865,608	+		TX73_013040	0.30	+2.5
2,865,610	+		TX73_013040	0.30	+1.7
2,865,611	+		TX73_013040	0.31	+1.8
2,865,616	-		TX73_013040	0.31	+2.2
2,865,619	-		TX73_013040	0.32	+1.3
2,865,627	+		TX73_013040	0.33	+1.5
2,865,635	+		TX73_013040	0.34	+1.0
2,865,643	-		TX73_013040	0.35	+2.0
2,865,680	-		TX73_013040	0.40	+1.2
2,865,680	-		TX73_013040	0.40	+2.1
2,865,685	-		TX73_013040	0.41	+1.3
2,865,685	-		TX73_013040	0.41	+1.6
2,865,690	-		TX73_013040	0.42	+1.6
2,865,692	+		TX73_013040	0.42	+1.4
2,865,700	-		TX73_013040	0.43	+2.2
2,865,700	-		TX73_013040	0.43	+1.5
2,865,700	-		TX73_013040	0.43	+2.5
2,865,708	-		TX73_013040	0.44	+1.9
2,865,717	+		TX73_013040	0.45	+1.0
2,865,717	-		TX73_013040	0.45	+1.9
2,865,719	+		TX73_013040	0.46	+2.0
2,865,768	+		TX73_013040	0.53	+2.3
2,865,776	-		TX73_013040	0.54	+1.0
2,865,776	-		TX73_013040	0.54	+1.6
2,865,777	-		TX73_013040	0.54	+2.9
2,865,786	-		TX73_013040	0.55	+1.6
2,865,810	-		TX73_013040	0.59	+0.7
2,865,821	+		TX73_013040	0.60	+1.2
2,865,821	+		TX73_013040	0.60	+2.4
2,865,845	+		TX73_013040	0.64	+1.9
2,865,852	+		TX73_013040	0.65	+0.8
2,865,857	+		TX73_013040	0.65	+1.7
2,865,877	-		TX73_013040	0.68	+1.6
2,865,884	+		TX73_013040	0.69	+1.8
2,865,886	+		TX73_013040	0.69	+1.6
2,865,894	-		TX73_013040	0.70	+2.5
2,865,903	-		TX73_013040	0.72	+1.4
2,865,920	+		TX73_013040	0.74	+1.0
2,865,937	+		TX73_013040	0.77	+1.9
2,865,937	-		TX73_013040	0.77	+2.0
2,865,938	-		TX73_013040	0.77	+1.5
2,865,961	+		TX73_013040	0.80	+1.7
2,865,961	+		TX73_013040	0.80	+1.8
2,865,969	-		TX73_013040	0.81	+2.0
2,865,978	+		TX73_013040	0.82	+0.9
2,865,990	-		TX73_013040	0.84	+1.8
2,866,009	+		TX73_013040	0.87	+1.2
2,866,009	+		TX73_013040	0.87	+2.0
2,866,013	+		TX73_013040	0.87	+1.3
2,866,016	-		TX73_013040	0.88	+0.6
2,866,017	-		TX73_013040	0.88	+0.9
2,866,017	-		TX73_013040	0.88	+1.7
2,866,017	-		TX73_013040	0.88	+2.0
2,866,021	-		TX73_013040	0.88	+2.5
2,866,024	+		TX73_013040	0.89	+2.1
2,866,024	+		TX73_013040	0.89	+1.6
2,866,031	-		TX73_013040	0.90	+0.9
2,866,034	+				+1.6
2,866,042	+				+2.1
2,866,042	+				+1.8
2,866,042	+				+1.9
2,866,042	+				+2.4
2,866,042	-				+1.3
2,866,044	-				+1.7
2,866,051	-				+2.4
2,866,053	-				+1.5
2,866,085	+				+0.4
2,866,085	+				+0.3
2,866,091	+				+0.6
2,866,091	+				+0.0
2,866,099	-				+0.0
2,866,101	+				+0.0
2,866,111	+				-1.1
2,866,126	-				-0.5
2,866,143	+				+0.2
2,866,143	+				-0.3
2,866,151	-				-0.4