Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011615

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
2,542,968	-		TX73_011600	0.80	-1.5
2,542,990	+		TX73_011600	0.85	-0.0
2,542,998	-		TX73_011600	0.87	-0.7
2,543,000	+		TX73_011600	0.87	+0.1
2,543,000	-		TX73_011600	0.87	+0.3
2,543,000	-		TX73_011600	0.87	-0.0
2,543,027	-				-0.5
2,543,067	-				-0.5
2,543,072	-				+0.0
2,543,095	+				-0.3
2,543,113	-				-1.4
2,543,117	+				-0.5
2,543,123	-				-0.9
2,543,171	+				-0.1
2,543,188	+				-0.1
2,543,190	-				-0.6
2,543,204	-		TX73_011605	0.12	+0.4
2,543,225	-		TX73_011605	0.25	+0.4
2,543,225	-		TX73_011605	0.25	-0.3
2,543,238	+		TX73_011605	0.33	+0.5
2,543,252	+		TX73_011605	0.42	-1.1
2,543,258	+		TX73_011605	0.46	+0.3
2,543,279	+		TX73_011605	0.59	-0.2
2,543,279	+		TX73_011605	0.59	-0.8
2,543,287	-		TX73_011605	0.64	-0.3
2,543,287	-		TX73_011605	0.64	+0.2
2,543,289	+		TX73_011605	0.65	+0.0
2,543,291	+		TX73_011605	0.66	-1.5
2,543,359	+				-0.2
2,543,359	+				-0.8
2,543,366	+				+1.1
2,543,366	+				+0.6
2,543,367	-				+0.4
2,543,372	+				-1.1
2,543,380	-				-1.6
2,543,392	+				+0.5
2,543,407	+				-0.8
2,543,415	-				+1.1
2,543,446	-				-0.1
2,543,457	+				+0.0
2,543,469	+				+0.3
2,543,492	-				+0.6
2,543,494	-				+0.4
2,543,497	+				+0.6
2,543,505	-				-0.8
2,543,524	+				-0.2
2,543,581	+				+0.1
2,543,584	-				-0.2
2,543,586	+				-0.8
2,543,589	-				-0.2
2,543,615	-		TX73_011610	0.15	-0.8
2,543,653	+		TX73_011610	0.25	-0.6
2,543,653	+		TX73_011610	0.25	+0.9
2,543,653	+		TX73_011610	0.25	-0.3
2,543,658	+		TX73_011610	0.26	-0.5
2,543,659	-		TX73_011610	0.26	-0.1
2,543,659	-		TX73_011610	0.26	-0.2
2,543,661	-		TX73_011610	0.27	+1.4
2,543,661	-		TX73_011610	0.27	-0.8
2,543,661	-		TX73_011610	0.27	-0.4
2,543,676	+		TX73_011610	0.31	-0.0
2,543,676	+		TX73_011610	0.31	+0.3
2,543,682	-		TX73_011610	0.32	+1.6
2,543,700	+		TX73_011610	0.37	-0.1
2,543,700	+		TX73_011610	0.37	-0.5
2,543,702	+		TX73_011610	0.37	-0.7
2,543,704	+		TX73_011610	0.38	-0.9
2,543,708	+		TX73_011610	0.39	-0.8
2,543,708	+		TX73_011610	0.39	-0.3
2,543,708	-		TX73_011610	0.39	-0.6
2,543,710	-		TX73_011610	0.39	+0.3
2,543,710	-		TX73_011610	0.39	+0.9
2,543,712	-		TX73_011610	0.40	-0.2
2,543,715	-		TX73_011610	0.41	-0.4
2,543,722	-		TX73_011610	0.43	-0.3
2,543,732	+		TX73_011610	0.45	+0.3
2,543,732	+		TX73_011610	0.45	+0.2
2,543,738	+		TX73_011610	0.47	-0.3
2,543,740	-		TX73_011610	0.47	-0.7
2,543,758	+		TX73_011610	0.52	+0.9
2,543,775	+		TX73_011610	0.56	-0.9
2,543,788	-		TX73_011610	0.59	-1.3
2,543,807	+		TX73_011610	0.64	-0.6
2,543,826	+		TX73_011610	0.69	+0.4
2,543,904	+		TX73_011610	0.89	-1.2
2,543,910	-				-1.2
2,543,910	-				-0.3
2,543,910	-				-0.0
2,543,912	-				+0.9
2,543,912	-				-0.5
2,543,918	-				+0.0
2,543,920	+				-0.2
2,543,936	-				-0.5
2,543,941	-				+0.5
2,543,944	+				-0.8
2,543,953	-				-0.5
2,544,073	-		TX73_011615	0.11	-0.5
2,544,081	+		TX73_011615	0.12	-0.4
2,544,083	+		TX73_011615	0.13	-0.4
2,544,097	-		TX73_011615	0.14	+0.2
2,544,102	+		TX73_011615	0.15	-1.2
2,544,102	-		TX73_011615	0.15	+0.2
2,544,117	+		TX73_011615	0.16	+0.1
2,544,131	+		TX73_011615	0.18	+0.4
2,544,132	+		TX73_011615	0.18	+0.1
2,544,150	-		TX73_011615	0.20	+0.1
2,544,157	+		TX73_011615	0.20	+0.8
2,544,157	+		TX73_011615	0.20	-0.2
2,544,185	-		TX73_011615	0.23	-1.3
2,544,204	+		TX73_011615	0.26	-0.3
2,544,205	+		TX73_011615	0.26	-0.1
2,544,213	-		TX73_011615	0.26	+0.1
2,544,224	+		TX73_011615	0.28	-1.0
2,544,229	-		TX73_011615	0.28	+0.2
2,544,236	-		TX73_011615	0.29	-1.3
2,544,265	+		TX73_011615	0.32	-0.2
2,544,268	-		TX73_011615	0.32	-0.5
2,544,269	+		TX73_011615	0.32	-0.7
2,544,270	+		TX73_011615	0.33	-0.2
2,544,273	-		TX73_011615	0.33	-0.6
2,544,277	-		TX73_011615	0.33	-0.7
2,544,278	-		TX73_011615	0.33	+0.9
2,544,278	-		TX73_011615	0.33	+0.4
2,544,295	+		TX73_011615	0.35	-0.8
2,544,296	+		TX73_011615	0.35	+0.2
2,544,318	+		TX73_011615	0.38	+0.3
2,544,319	+		TX73_011615	0.38	+0.1
2,544,327	-		TX73_011615	0.39	-1.7
2,544,330	-		TX73_011615	0.39	-0.0
2,544,330	-		TX73_011615	0.39	-0.5
2,544,384	+		TX73_011615	0.45	-0.0
2,544,404	-		TX73_011615	0.47	+0.3
2,544,409	+		TX73_011615	0.47	+0.4
2,544,439	+		TX73_011615	0.51	+0.8
2,544,447	+		TX73_011615	0.52	-0.2
2,544,450	-		TX73_011615	0.52	-0.2
2,544,462	+		TX73_011615	0.53	-0.3
2,544,470	-		TX73_011615	0.54	-0.6
2,544,470	-		TX73_011615	0.54	-0.8
2,544,499	-		TX73_011615	0.57	-0.3
2,544,523	+		TX73_011615	0.60	-0.6
2,544,532	-		TX73_011615	0.61	+0.3
2,544,561	+		TX73_011615	0.64	-0.1
2,544,561	+		TX73_011615	0.64	-0.1
2,544,568	+		TX73_011615	0.65	+0.1
2,544,568	+		TX73_011615	0.65	-0.6
2,544,568	+		TX73_011615	0.65	-0.3
2,544,569	-		TX73_011615	0.65	+0.2
2,544,592	+		TX73_011615	0.67	-0.3
2,544,599	+		TX73_011615	0.68	+0.3
2,544,600	-		TX73_011615	0.68	+0.8
2,544,607	-		TX73_011615	0.69	-0.8
2,544,648	-		TX73_011615	0.73	+0.3
2,544,648	-		TX73_011615	0.73	-0.1
2,544,661	-		TX73_011615	0.74	+0.3
2,544,661	-		TX73_011615	0.74	-0.6
2,544,662	+		TX73_011615	0.75	-0.4
2,544,667	+		TX73_011615	0.75	-0.6
2,544,669	-		TX73_011615	0.75	+0.4
2,544,675	-		TX73_011615	0.76	-1.5
2,544,677	+		TX73_011615	0.76	-0.7
2,544,677	+		TX73_011615	0.76	+0.4
2,544,704	-		TX73_011615	0.79	-1.0
2,544,704	-		TX73_011615	0.79	+0.0
2,544,725	+		TX73_011615	0.81	-0.8
2,544,727	-		TX73_011615	0.82	+0.2
2,544,762	-		TX73_011615	0.85	-0.3
2,544,790	+		TX73_011615	0.88	-0.2
2,544,792	-		TX73_011615	0.89	-0.7
2,544,794	+		TX73_011615	0.89	+0.2
2,544,801	+		TX73_011615	0.89	-0.1
2,544,809	-				+0.4
2,544,817	+				-1.2
2,544,817	+				+0.6
2,544,817	+				-0.9
2,544,817	+				-0.2
2,544,818	-				-0.1
2,544,844	+				-0.8
2,544,844	+				+0.1
2,544,844	+				-1.7
2,544,844	+				-0.3
2,544,852	-				-0.6
2,544,852	-				-1.8
2,544,852	-				+0.2
2,544,852	-				-0.6
2,544,874	-				-0.5
2,544,901	+				+0.2
2,544,901	+				-0.2
2,544,949	+				-1.3
2,544,968	+				+0.0
2,544,973	+				-0.6
2,544,981	-				+0.3
2,544,981	-				-0.5
2,544,987	+				-0.4
2,545,015	+				-0.0
2,545,015	+				-0.6
2,545,023	-				+0.1
2,545,023	-				-0.4
2,545,023	-				-0.4
2,545,023	-				+0.4
2,545,051	+				+0.2
2,545,059	-				+0.2
2,545,061	+				-0.6
2,545,112	+				-0.5
2,545,117	+				+0.3
2,545,117	+				-0.9
2,545,139	+				-1.0
2,545,147	-				-0.6
2,545,154	+				-0.1
2,545,162	-				-0.9
2,545,165	+				+0.9
2,545,166	+				+0.3
2,545,169	-				-0.2
2,545,174	-				-0.1
2,545,206	-				-0.0
2,545,222	-				-0.1
2,545,254	+				-0.6
2,545,254	+				-0.8
2,545,262	-				+0.8
2,545,273	+				-0.1
2,545,273	+				-0.6
2,545,281	-				-0.2
2,545,330	+				-0.5
2,545,358	+		TX73_011620	0.12	+0.1
2,545,428	+		TX73_011620	0.19	-0.9
2,545,428	+		TX73_011620	0.19	-0.1
2,545,428	+		TX73_011620	0.19	-0.3
2,545,428	+		TX73_011620	0.19	+0.3
2,545,436	-		TX73_011620	0.20	-1.2
2,545,436	-		TX73_011620	0.20	-0.9
2,545,436	-		TX73_011620	0.20	-0.4
2,545,450	-		TX73_011620	0.21	-0.2
2,545,451	-		TX73_011620	0.21	+0.0
2,545,452	-		TX73_011620	0.21	-1.2
2,545,459	-		TX73_011620	0.22	-0.4
2,545,465	-		TX73_011620	0.23	-0.1
2,545,509	-		TX73_011620	0.27	+0.0
2,545,511	-		TX73_011620	0.27	-1.1
2,545,564	+		TX73_011620	0.32	-0.4
2,545,564	+		TX73_011620	0.32	+0.7
2,545,578	-		TX73_011620	0.34	-0.5
2,545,585	+		TX73_011620	0.34	-0.3
2,545,585	+		TX73_011620	0.34	-0.3
2,545,585	+		TX73_011620	0.34	+0.3
2,545,593	-		TX73_011620	0.35	-1.4
2,545,595	+		TX73_011620	0.35	-0.9
2,545,595	+		TX73_011620	0.35	-0.6
2,545,598	-		TX73_011620	0.36	-0.3
2,545,603	-		TX73_011620	0.36	-0.4
2,545,603	-		TX73_011620	0.36	-0.5
2,545,603	-		TX73_011620	0.36	-0.0
2,545,603	-		TX73_011620	0.36	-0.5
2,545,604	-		TX73_011620	0.36	-1.6
2,545,609	-		TX73_011620	0.37	-0.7
2,545,616	-		TX73_011620	0.37	-0.4
2,545,618	+		TX73_011620	0.37	-0.4
2,545,639	-		TX73_011620	0.39	+0.2
2,545,641	-		TX73_011620	0.40	+0.2
2,545,648	+		TX73_011620	0.40	-1.2
2,545,656	-		TX73_011620	0.41	+0.3
2,545,657	+		TX73_011620	0.41	-1.1
2,545,662	+		TX73_011620	0.42	+0.2
2,545,662	+		TX73_011620	0.42	-0.7
2,545,664	-		TX73_011620	0.42	+0.0
2,545,667	+		TX73_011620	0.42	-0.7
2,545,675	-		TX73_011620	0.43	-0.0
2,545,730	+		TX73_011620	0.48	+0.2
2,545,734	+		TX73_011620	0.49	+1.0
2,545,753	+		TX73_011620	0.50	+0.1
2,545,785	+		TX73_011620	0.54	-0.4
2,545,801	-		TX73_011620	0.55	-0.4
2,545,849	+		TX73_011620	0.60	-0.2