Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001685 and TX73_001690 are separated by 17 nucleotides TX73_001690 and TX73_001695 are separated by 70 nucleotides TX73_001695 and TX73_001700 are separated by 4 nucleotides TX73_001700 and TX73_001705 overlap by 11 nucleotides TX73_001705 and TX73_001710 are separated by 51 nucleotides
TX73_001685: TX73_001685 - penicillin-binding protein activator, at 352,887 to 354,086
_001685
TX73_001690: TX73_001690 - helix-turn-helix domain-containing protein, at 354,104 to 354,466
_001690
TX73_001695: TX73_001695 - nuclear transport factor 2 family protein, at 354,537 to 354,866
_001695
TX73_001700: TX73_001700 - radical SAM family heme chaperone HemW, at 354,871 to 356,028
_001700
TX73_001705: TX73_001705 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 356,018 to 356,650
_001705
TX73_001710: TX73_001710 - ribonuclease PH, at 356,702 to 357,415
_001710
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 353.900 kb on + strand, within TX73_001685 at 353.900 kb on + strand, within TX73_001685 at 353.900 kb on + strand, within TX73_001685 at 353.909 kb on - strand, within TX73_001685 at 353.924 kb on + strand, within TX73_001685 at 353.978 kb on + strand at 353.984 kb on + strand at 353.986 kb on - strand at 353.989 kb on + strand at 353.998 kb on + strand at 353.998 kb on + strand at 354.021 kb on + strand at 354.021 kb on - strand at 354.027 kb on - strand at 354.031 kb on - strand at 354.040 kb on + strand at 354.066 kb on + strand at 354.079 kb on - strand at 354.102 kb on + strand at 354.110 kb on - strand at 354.110 kb on - strand at 354.115 kb on + strand at 354.115 kb on + strand at 354.123 kb on + strand at 354.123 kb on - strand at 354.123 kb on - strand at 354.123 kb on - strand at 354.123 kb on - strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.128 kb on - strand at 354.128 kb on - strand at 354.130 kb on + strand at 354.133 kb on - strand at 354.133 kb on - strand at 354.133 kb on - strand at 354.133 kb on - strand at 354.155 kb on - strand, within TX73_001690 at 354.165 kb on + strand, within TX73_001690 at 354.168 kb on - strand, within TX73_001690 at 354.176 kb on + strand, within TX73_001690 at 354.181 kb on + strand, within TX73_001690 at 354.183 kb on - strand, within TX73_001690 at 354.199 kb on + strand, within TX73_001690 at 354.207 kb on - strand, within TX73_001690 at 354.207 kb on - strand, within TX73_001690 at 354.228 kb on - strand, within TX73_001690 at 354.228 kb on - strand, within TX73_001690 at 354.242 kb on - strand, within TX73_001690 at 354.242 kb on - strand, within TX73_001690 at 354.278 kb on + strand, within TX73_001690 at 354.301 kb on - strand, within TX73_001690 at 354.331 kb on + strand, within TX73_001690 at 354.331 kb on + strand, within TX73_001690 at 354.339 kb on - strand, within TX73_001690 at 354.370 kb on + strand, within TX73_001690 at 354.378 kb on - strand, within TX73_001690 at 354.389 kb on + strand, within TX73_001690 at 354.399 kb on + strand, within TX73_001690 at 354.401 kb on + strand, within TX73_001690 at 354.402 kb on - strand, within TX73_001690 at 354.409 kb on + strand, within TX73_001690 at 354.409 kb on + strand, within TX73_001690 at 354.420 kb on + strand, within TX73_001690 at 354.428 kb on - strand, within TX73_001690 at 354.433 kb on + strand at 354.437 kb on + strand at 354.444 kb on + strand at 354.456 kb on + strand at 354.474 kb on + strand at 354.474 kb on + strand at 354.480 kb on + strand at 354.483 kb on - strand at 354.485 kb on + strand at 354.486 kb on - strand at 354.493 kb on - strand at 354.496 kb on + strand at 354.511 kb on + strand at 354.522 kb on - strand at 354.528 kb on - strand at 354.551 kb on + strand at 354.553 kb on - strand at 354.587 kb on - strand, within TX73_001695 at 354.597 kb on + strand, within TX73_001695 at 354.597 kb on + strand, within TX73_001695 at 354.597 kb on + strand, within TX73_001695 at 354.597 kb on + strand, within TX73_001695 at 354.602 kb on + strand, within TX73_001695 at 354.605 kb on - strand, within TX73_001695 at 354.605 kb on - strand, within TX73_001695 at 354.628 kb on + strand, within TX73_001695 at 354.635 kb on + strand, within TX73_001695 at 354.655 kb on - strand, within TX73_001695 at 354.681 kb on + strand, within TX73_001695 at 354.681 kb on + strand, within TX73_001695 at 354.681 kb on + strand, within TX73_001695 at 354.681 kb on + strand, within TX73_001695 at 354.689 kb on - strand, within TX73_001695 at 354.726 kb on - strand, within TX73_001695 at 354.747 kb on + strand, within TX73_001695 at 354.752 kb on + strand, within TX73_001695 at 354.791 kb on + strand, within TX73_001695 at 354.791 kb on + strand, within TX73_001695 at 354.799 kb on - strand, within TX73_001695 at 354.799 kb on - strand, within TX73_001695 at 354.804 kb on - strand, within TX73_001695 at 354.818 kb on + strand, within TX73_001695 at 354.838 kb on + strand at 356.015 kb on + strand at 356.015 kb on + strand at 356.017 kb on - strand at 356.023 kb on - strand at 356.031 kb on - strand at 356.034 kb on + strand at 356.036 kb on - strand at 356.051 kb on - strand at 356.094 kb on + strand, within TX73_001705 at 356.109 kb on + strand, within TX73_001705 at 356.122 kb on - strand, within TX73_001705 at 356.130 kb on - strand, within TX73_001705 at 356.135 kb on + strand, within TX73_001705 at 356.143 kb on - strand, within TX73_001705 at 356.143 kb on - strand, within TX73_001705 at 356.148 kb on + strand, within TX73_001705 at 356.148 kb on + strand, within TX73_001705 at 356.154 kb on + strand, within TX73_001705 at 356.156 kb on - strand, within TX73_001705 at 356.161 kb on + strand, within TX73_001705 at 356.169 kb on - strand, within TX73_001705 at 356.169 kb on - strand, within TX73_001705 at 356.169 kb on - strand, within TX73_001705 at 356.169 kb on - strand, within TX73_001705 at 356.181 kb on + strand, within TX73_001705 at 356.191 kb on - strand, within TX73_001705 at 356.198 kb on + strand, within TX73_001705 at 356.198 kb on + strand, within TX73_001705 at 356.202 kb on + strand, within TX73_001705 at 356.204 kb on + strand, within TX73_001705 at 356.206 kb on - strand, within TX73_001705 at 356.219 kb on + strand, within TX73_001705 at 356.219 kb on + strand, within TX73_001705 at 356.219 kb on + strand, within TX73_001705 at 356.227 kb on - strand, within TX73_001705 at 356.227 kb on - strand, within TX73_001705 at 356.237 kb on - strand, within TX73_001705 at 356.245 kb on - strand, within TX73_001705 at 356.250 kb on - strand, within TX73_001705 at 356.251 kb on + strand, within TX73_001705 at 356.253 kb on + strand, within TX73_001705 at 356.261 kb on - strand, within TX73_001705 at 356.270 kb on + strand, within TX73_001705 at 356.271 kb on - strand, within TX73_001705 at 356.315 kb on + strand, within TX73_001705 at 356.325 kb on + strand, within TX73_001705 at 356.333 kb on - strand, within TX73_001705 at 356.346 kb on - strand, within TX73_001705 at 356.359 kb on + strand, within TX73_001705 at 356.365 kb on + strand, within TX73_001705 at 356.378 kb on + strand, within TX73_001705 at 356.382 kb on + strand, within TX73_001705 at 356.387 kb on + strand, within TX73_001705 at 356.387 kb on + strand, within TX73_001705 at 356.387 kb on + strand, within TX73_001705 at 356.395 kb on - strand, within TX73_001705 at 356.395 kb on - strand, within TX73_001705 at 356.395 kb on - strand, within TX73_001705 at 356.395 kb on - strand, within TX73_001705 at 356.400 kb on + strand, within TX73_001705 at 356.431 kb on - strand, within TX73_001705 at 356.457 kb on + strand, within TX73_001705 at 356.465 kb on - strand, within TX73_001705 at 356.468 kb on + strand, within TX73_001705 at 356.470 kb on + strand, within TX73_001705 at 356.483 kb on - strand, within TX73_001705 at 356.483 kb on - strand, within TX73_001705 at 356.488 kb on - strand, within TX73_001705 at 356.488 kb on - strand, within TX73_001705 at 356.493 kb on + strand, within TX73_001705 at 356.494 kb on + strand, within TX73_001705 at 356.569 kb on - strand, within TX73_001705 at 356.577 kb on - strand, within TX73_001705 at 356.578 kb on - strand, within TX73_001705 at 356.580 kb on - strand, within TX73_001705 at 356.596 kb on + strand at 356.635 kb on - strand at 356.645 kb on + strand at 356.661 kb on + strand at 356.661 kb on + strand at 356.661 kb on + strand at 356.661 kb on + strand at 356.667 kb on - strand at 356.669 kb on - strand at 356.669 kb on - strand at 356.669 kb on - strand at 356.669 kb on - strand at 356.669 kb on - strand at 356.669 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.680 kb on + strand at 356.733 kb on - strand at 356.733 kb on - strand at 356.735 kb on - strand at 356.746 kb on - strand at 356.747 kb on + strand at 356.755 kb on - strand at 356.767 kb on + strand at 356.783 kb on - strand, within TX73_001710 at 356.790 kb on + strand, within TX73_001710 at 356.798 kb on + strand, within TX73_001710 at 356.808 kb on - strand, within TX73_001710 at 356.810 kb on + strand, within TX73_001710 at 356.810 kb on + strand, within TX73_001710 at 356.810 kb on + strand, within TX73_001710 at 356.810 kb on + strand, within TX73_001710 at 356.811 kb on - strand, within TX73_001710 at 356.813 kb on - strand, within TX73_001710 at 356.818 kb on - strand, within TX73_001710 at 356.818 kb on - strand, within TX73_001710 at 356.818 kb on - strand, within TX73_001710 at 356.818 kb on - strand, within TX73_001710 at 356.818 kb on - strand, within TX73_001710 at 356.831 kb on - strand, within TX73_001710 at 356.839 kb on - strand, within TX73_001710 at 356.839 kb on - strand, within TX73_001710 at 356.844 kb on + strand, within TX73_001710 at 356.849 kb on - strand, within TX73_001710 at 356.870 kb on - strand, within TX73_001710 at 356.878 kb on + strand, within TX73_001710 at 356.884 kb on - strand, within TX73_001710 at 356.891 kb on - strand, within TX73_001710 at 356.912 kb on + strand, within TX73_001710 at 356.920 kb on - strand, within TX73_001710 at 356.922 kb on + strand, within TX73_001710 at 356.922 kb on + strand, within TX73_001710 at 356.928 kb on - strand, within TX73_001710 at 356.930 kb on + strand, within TX73_001710 at 356.953 kb on + strand, within TX73_001710 at 356.953 kb on + strand, within TX73_001710 at 356.968 kb on - strand, within TX73_001710 at 356.988 kb on - strand, within TX73_001710 at 356.997 kb on - strand, within TX73_001710 at 357.015 kb on - strand, within TX73_001710 at 357.015 kb on - strand, within TX73_001710 at 357.015 kb on - strand, within TX73_001710 at 357.015 kb on - strand, within TX73_001710 at 357.020 kb on - strand, within TX73_001710 at 357.026 kb on + strand, within TX73_001710 at 357.026 kb on + strand, within TX73_001710
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 353,900 + TX73_001685 0.84 -0.6 353,900 + TX73_001685 0.84 +0.1 353,900 + TX73_001685 0.84 -1.7 353,909 - TX73_001685 0.85 +0.6 353,924 + TX73_001685 0.86 -2.0 353,978 + +0.5 353,984 + -0.7 353,986 - -0.0 353,989 + +0.8 353,998 + -0.5 353,998 + +0.0 354,021 + -0.1 354,021 - +0.4 354,027 - +0.8 354,031 - +0.5 354,040 + +0.3 354,066 + -0.3 354,079 - -0.2 354,102 + -0.2 354,110 - -0.5 354,110 - +0.5 354,115 + +0.4 354,115 + -0.3 354,123 + -0.1 354,123 - +2.5 354,123 - -0.6 354,123 - +0.4 354,123 - +0.8 354,125 + -0.4 354,125 + +0.1 354,128 - +0.2 354,128 - +0.4 354,130 + -0.5 354,133 - -0.1 354,133 - -0.1 354,133 - -0.5 354,133 - +0.2 354,155 - TX73_001690 0.14 -0.5 354,165 + TX73_001690 0.17 +0.2 354,168 - TX73_001690 0.18 +0.0 354,176 + TX73_001690 0.20 -0.3 354,181 + TX73_001690 0.21 +0.4 354,183 - TX73_001690 0.22 +0.3 354,199 + TX73_001690 0.26 +0.1 354,207 - TX73_001690 0.28 +0.2 354,207 - TX73_001690 0.28 -0.9 354,228 - TX73_001690 0.34 +0.1 354,228 - TX73_001690 0.34 +0.4 354,242 - TX73_001690 0.38 +0.5 354,242 - TX73_001690 0.38 +0.1 354,278 + TX73_001690 0.48 +0.4 354,301 - TX73_001690 0.54 +0.0 354,331 + TX73_001690 0.63 -0.3 354,331 + TX73_001690 0.63 +0.4 354,339 - TX73_001690 0.65 +0.1 354,370 + TX73_001690 0.73 +0.4 354,378 - TX73_001690 0.75 -1.3 354,389 + TX73_001690 0.79 +2.2 354,399 + TX73_001690 0.81 -0.6 354,401 + TX73_001690 0.82 +0.5 354,402 - TX73_001690 0.82 -0.4 354,409 + TX73_001690 0.84 +0.5 354,409 + TX73_001690 0.84 -0.4 354,420 + TX73_001690 0.87 +0.9 354,428 - TX73_001690 0.89 +0.8 354,433 + -0.7 354,437 + -0.4 354,444 + -0.0 354,456 + -0.0 354,474 + +0.3 354,474 + -0.7 354,480 + -0.4 354,483 - +0.2 354,485 + -0.0 354,486 - +0.1 354,493 - +0.2 354,496 + +0.1 354,511 + -0.1 354,522 - +0.4 354,528 - -0.3 354,551 + -0.2 354,553 - -0.3 354,587 - TX73_001695 0.15 -0.2 354,597 + TX73_001695 0.18 -0.1 354,597 + TX73_001695 0.18 -0.5 354,597 + TX73_001695 0.18 +0.3 354,597 + TX73_001695 0.18 +0.5 354,602 + TX73_001695 0.20 -0.3 354,605 - TX73_001695 0.21 -0.7 354,605 - TX73_001695 0.21 -0.1 354,628 + TX73_001695 0.28 -0.8 354,635 + TX73_001695 0.30 +0.5 354,655 - TX73_001695 0.36 -0.0 354,681 + TX73_001695 0.44 +0.4 354,681 + TX73_001695 0.44 -0.3 354,681 + TX73_001695 0.44 -0.4 354,681 + TX73_001695 0.44 +0.4 354,689 - TX73_001695 0.46 +0.1 354,726 - TX73_001695 0.57 -0.9 354,747 + TX73_001695 0.64 +0.0 354,752 + TX73_001695 0.65 +0.3 354,791 + TX73_001695 0.77 -0.3 354,791 + TX73_001695 0.77 -0.3 354,799 - TX73_001695 0.79 +0.3 354,799 - TX73_001695 0.79 +1.4 354,804 - TX73_001695 0.81 -0.1 354,818 + TX73_001695 0.85 +0.4 354,838 + -0.4 356,015 + +0.9 356,015 + -0.4 356,017 - +0.1 356,023 - +0.3 356,031 - -0.0 356,034 + -0.5 356,036 - -1.4 356,051 - -0.1 356,094 + TX73_001705 0.12 -0.7 356,109 + TX73_001705 0.14 +0.5 356,122 - TX73_001705 0.16 -0.1 356,130 - TX73_001705 0.18 -0.4 356,135 + TX73_001705 0.18 -1.1 356,143 - TX73_001705 0.20 +0.8 356,143 - TX73_001705 0.20 +1.0 356,148 + TX73_001705 0.21 -1.0 356,148 + TX73_001705 0.21 -0.7 356,154 + TX73_001705 0.21 -0.0 356,156 - TX73_001705 0.22 -2.1 356,161 + TX73_001705 0.23 +0.1 356,169 - TX73_001705 0.24 -1.7 356,169 - TX73_001705 0.24 -0.2 356,169 - TX73_001705 0.24 +1.2 356,169 - TX73_001705 0.24 -0.7 356,181 + TX73_001705 0.26 +0.1 356,191 - TX73_001705 0.27 +0.2 356,198 + TX73_001705 0.28 -1.7 356,198 + TX73_001705 0.28 -0.3 356,202 + TX73_001705 0.29 +1.3 356,204 + TX73_001705 0.29 -0.3 356,206 - TX73_001705 0.30 +0.5 356,219 + TX73_001705 0.32 -0.3 356,219 + TX73_001705 0.32 -0.4 356,219 + TX73_001705 0.32 -0.5 356,227 - TX73_001705 0.33 -0.6 356,227 - TX73_001705 0.33 +0.3 356,237 - TX73_001705 0.35 -1.9 356,245 - TX73_001705 0.36 -0.3 356,250 - TX73_001705 0.37 +0.8 356,251 + TX73_001705 0.37 +0.5 356,253 + TX73_001705 0.37 +0.1 356,261 - TX73_001705 0.38 +0.4 356,270 + TX73_001705 0.40 +1.9 356,271 - TX73_001705 0.40 -0.5 356,315 + TX73_001705 0.47 +0.1 356,325 + TX73_001705 0.48 -0.3 356,333 - TX73_001705 0.50 +0.1 356,346 - TX73_001705 0.52 -1.6 356,359 + TX73_001705 0.54 -0.1 356,365 + TX73_001705 0.55 -1.6 356,378 + TX73_001705 0.57 -0.2 356,382 + TX73_001705 0.58 +0.9 356,387 + TX73_001705 0.58 +0.7 356,387 + TX73_001705 0.58 -1.3 356,387 + TX73_001705 0.58 -0.2 356,395 - TX73_001705 0.60 +0.8 356,395 - TX73_001705 0.60 -0.6 356,395 - TX73_001705 0.60 -0.9 356,395 - TX73_001705 0.60 -0.6 356,400 + TX73_001705 0.60 -0.1 356,431 - TX73_001705 0.65 +0.0 356,457 + TX73_001705 0.69 -0.0 356,465 - TX73_001705 0.71 -1.6 356,468 + TX73_001705 0.71 -0.8 356,470 + TX73_001705 0.71 +0.4 356,483 - TX73_001705 0.73 +0.1 356,483 - TX73_001705 0.73 +0.3 356,488 - TX73_001705 0.74 +1.8 356,488 - TX73_001705 0.74 +0.1 356,493 + TX73_001705 0.75 +0.5 356,494 + TX73_001705 0.75 -1.1 356,569 - TX73_001705 0.87 +0.6 356,577 - TX73_001705 0.88 -0.1 356,578 - TX73_001705 0.88 +0.4 356,580 - TX73_001705 0.89 +0.5 356,596 + +0.4 356,635 - -0.4 356,645 + -0.7 356,661 + -0.5 356,661 + -0.2 356,661 + -0.4 356,661 + +0.1 356,667 - -1.5 356,669 - +0.9 356,669 - +0.7 356,669 - +0.7 356,669 - -1.4 356,669 - +0.2 356,669 - -0.3 356,674 - -0.3 356,674 - -0.5 356,680 + +0.8 356,733 - -0.2 356,733 - +0.5 356,735 - -1.2 356,746 - +0.8 356,747 + +0.8 356,755 - -1.0 356,767 + +0.5 356,783 - TX73_001710 0.11 -0.5 356,790 + TX73_001710 0.12 -0.2 356,798 + TX73_001710 0.13 +0.3 356,808 - TX73_001710 0.15 +0.3 356,810 + TX73_001710 0.15 -0.3 356,810 + TX73_001710 0.15 +0.3 356,810 + TX73_001710 0.15 +0.3 356,810 + TX73_001710 0.15 -0.0 356,811 - TX73_001710 0.15 +0.1 356,813 - TX73_001710 0.16 +2.1 356,818 - TX73_001710 0.16 -2.1 356,818 - TX73_001710 0.16 +0.8 356,818 - TX73_001710 0.16 +0.8 356,818 - TX73_001710 0.16 +0.5 356,818 - TX73_001710 0.16 -0.1 356,831 - TX73_001710 0.18 +0.3 356,839 - TX73_001710 0.19 -0.1 356,839 - TX73_001710 0.19 -0.8 356,844 + TX73_001710 0.20 -1.2 356,849 - TX73_001710 0.21 +1.4 356,870 - TX73_001710 0.24 -0.7 356,878 + TX73_001710 0.25 +0.4 356,884 - TX73_001710 0.25 +0.5 356,891 - TX73_001710 0.26 -0.5 356,912 + TX73_001710 0.29 -0.9 356,920 - TX73_001710 0.31 -1.1 356,922 + TX73_001710 0.31 +0.3 356,922 + TX73_001710 0.31 +1.0 356,928 - TX73_001710 0.32 -1.4 356,930 + TX73_001710 0.32 -0.0 356,953 + TX73_001710 0.35 -1.7 356,953 + TX73_001710 0.35 -1.2 356,968 - TX73_001710 0.37 -0.5 356,988 - TX73_001710 0.40 -0.5 356,997 - TX73_001710 0.41 +0.6 357,015 - TX73_001710 0.44 -0.4 357,015 - TX73_001710 0.44 -0.9 357,015 - TX73_001710 0.44 -1.4 357,015 - TX73_001710 0.44 -0.2 357,020 - TX73_001710 0.45 +0.3 357,026 + TX73_001710 0.45 +0.6 357,026 + TX73_001710 0.45 -0.8
Or see this region's nucleotide sequence