Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000845

Experiment: PM with succinate and Sodium Formate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000840 and TX73_000845 are separated by 151 nucleotidesTX73_000845 and TX73_000850 are separated by 138 nucleotides TX73_000840: TX73_000840 - DMT family transporter, at 179,631 to 180,536 _000840 TX73_000845: TX73_000845 - GTPase ObgE, at 180,688 to 181,749 _000845 TX73_000850: TX73_000850 - glutamate 5-kinase, at 181,888 to 183,018 _000850 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3at 179.727 kb on + strand, within TX73_000840at 179.735 kb on - strand, within TX73_000840at 179.745 kb on - strand, within TX73_000840at 179.754 kb on + strand, within TX73_000840at 179.779 kb on + strand, within TX73_000840at 179.844 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.871 kb on - strand, within TX73_000840at 179.871 kb on - strand, within TX73_000840at 179.886 kb on - strand, within TX73_000840at 179.903 kb on + strand, within TX73_000840at 179.927 kb on + strand, within TX73_000840at 179.927 kb on + strand, within TX73_000840at 179.935 kb on - strand, within TX73_000840at 179.935 kb on - strand, within TX73_000840at 179.940 kb on - strand, within TX73_000840at 179.945 kb on - strand, within TX73_000840at 179.960 kb on + strand, within TX73_000840at 179.967 kb on + strand, within TX73_000840at 179.968 kb on - strand, within TX73_000840at 179.974 kb on + strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.986 kb on - strand, within TX73_000840at 180.015 kb on - strand, within TX73_000840at 180.019 kb on + strand, within TX73_000840at 180.020 kb on - strand, within TX73_000840at 180.025 kb on - strand, within TX73_000840at 180.044 kb on - strand, within TX73_000840at 180.061 kb on - strand, within TX73_000840at 180.071 kb on - strand, within TX73_000840at 180.071 kb on - strand, within TX73_000840at 180.077 kb on - strand, within TX73_000840at 180.084 kb on - strand, within TX73_000840at 180.119 kb on - strand, within TX73_000840at 180.149 kb on - strand, within TX73_000840at 180.162 kb on - strand, within TX73_000840at 180.198 kb on + strand, within TX73_000840at 180.207 kb on - strand, within TX73_000840at 180.243 kb on - strand, within TX73_000840at 180.244 kb on + strand, within TX73_000840at 180.244 kb on + strand, within TX73_000840at 180.246 kb on + strand, within TX73_000840at 180.252 kb on - strand, within TX73_000840at 180.290 kb on + strand, within TX73_000840at 180.296 kb on + strand, within TX73_000840at 180.304 kb on + strand, within TX73_000840at 180.304 kb on + strand, within TX73_000840at 180.334 kb on + strand, within TX73_000840at 180.339 kb on + strand, within TX73_000840at 180.339 kb on + strand, within TX73_000840at 180.342 kb on - strand, within TX73_000840at 180.386 kb on + strand, within TX73_000840at 180.418 kb on + strand, within TX73_000840at 180.468 kb on + strandat 180.476 kb on - strandat 180.483 kb on + strandat 180.491 kb on - strandat 180.500 kb on + strandat 180.500 kb on + strandat 180.500 kb on + strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.519 kb on - strandat 180.530 kb on + strandat 180.530 kb on + strandat 180.535 kb on + strandat 180.538 kb on - strandat 180.538 kb on - strandat 180.543 kb on - strandat 180.577 kb on + strandat 180.587 kb on + strandat 180.594 kb on - strandat 180.597 kb on + strandat 180.597 kb on + strandat 180.600 kb on - strandat 180.620 kb on + strandat 180.622 kb on + strandat 180.623 kb on - strandat 180.623 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.668 kb on - strandat 180.669 kb on - strandat 181.662 kb on + strandat 181.686 kb on - strandat 181.720 kb on + strandat 181.722 kb on - strandat 181.722 kb on - strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.733 kb on - strandat 181.733 kb on - strandat 181.743 kb on + strandat 181.753 kb on + strandat 181.767 kb on + strandat 181.767 kb on + strandat 181.767 kb on + strandat 181.775 kb on - strandat 181.813 kb on + strandat 181.818 kb on + strandat 181.821 kb on - strandat 181.821 kb on - strandat 181.826 kb on - strandat 181.831 kb on + strandat 181.839 kb on - strandat 181.844 kb on - strandat 181.853 kb on + strandat 181.864 kb on - strandat 181.885 kb on + strandat 181.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark
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179,727 + TX73_000840 0.11 -0.1
179,735 - TX73_000840 0.11 -0.1
179,745 - TX73_000840 0.13 -0.2
179,754 + TX73_000840 0.14 -0.2
179,779 + TX73_000840 0.16 +0.4
179,844 - TX73_000840 0.24 -0.1
179,849 - TX73_000840 0.24 -0.1
179,849 - TX73_000840 0.24 +0.6
179,849 - TX73_000840 0.24 +0.2
179,871 - TX73_000840 0.26 +0.3
179,871 - TX73_000840 0.26 +0.8
179,886 - TX73_000840 0.28 -0.1
179,903 + TX73_000840 0.30 -0.6
179,927 + TX73_000840 0.33 +1.2
179,927 + TX73_000840 0.33 -0.0
179,935 - TX73_000840 0.34 -0.0
179,935 - TX73_000840 0.34 +0.8
179,940 - TX73_000840 0.34 -1.2
179,945 - TX73_000840 0.35 -0.2
179,960 + TX73_000840 0.36 +0.5
179,967 + TX73_000840 0.37 -2.2
179,968 - TX73_000840 0.37 -2.6
179,974 + TX73_000840 0.38 +0.6
179,975 - TX73_000840 0.38 -1.2
179,975 - TX73_000840 0.38 -1.1
179,975 - TX73_000840 0.38 +0.3
179,986 - TX73_000840 0.39 +0.0
180,015 - TX73_000840 0.42 -1.7
180,019 + TX73_000840 0.43 -0.8
180,020 - TX73_000840 0.43 +3.5
180,025 - TX73_000840 0.43 +0.3
180,044 - TX73_000840 0.46 +0.9
180,061 - TX73_000840 0.47 +1.7
180,071 - TX73_000840 0.49 +0.6
180,071 - TX73_000840 0.49 -0.2
180,077 - TX73_000840 0.49 +0.5
180,084 - TX73_000840 0.50 +0.3
180,119 - TX73_000840 0.54 -0.1
180,149 - TX73_000840 0.57 +0.2
180,162 - TX73_000840 0.59 +0.5
180,198 + TX73_000840 0.63 -0.2
180,207 - TX73_000840 0.64 -0.4
180,243 - TX73_000840 0.68 +1.2
180,244 + TX73_000840 0.68 +0.6
180,244 + TX73_000840 0.68 +0.8
180,246 + TX73_000840 0.68 -0.3
180,252 - TX73_000840 0.69 -0.6
180,290 + TX73_000840 0.73 +0.2
180,296 + TX73_000840 0.73 -0.0
180,304 + TX73_000840 0.74 +0.7
180,304 + TX73_000840 0.74 -0.1
180,334 + TX73_000840 0.78 +0.5
180,339 + TX73_000840 0.78 -0.1
180,339 + TX73_000840 0.78 +0.4
180,342 - TX73_000840 0.78 -0.8
180,386 + TX73_000840 0.83 -0.2
180,418 + TX73_000840 0.87 -0.5
180,468 + +0.8
180,476 - -0.8
180,483 + -0.5
180,491 - -0.8
180,500 + +0.9
180,500 + +0.7
180,500 + -1.3
180,508 - -0.2
180,508 - -0.3
180,508 - -0.1
180,508 - +0.1
180,508 - +0.8
180,519 - +0.2
180,530 + +0.0
180,530 + +0.0
180,535 + -0.6
180,538 - -0.5
180,538 - -0.3
180,543 - -0.3
180,577 + +0.7
180,587 + +0.5
180,594 - +0.7
180,597 + -0.4
180,597 + +0.5
180,600 - -1.1
180,620 + -0.4
180,622 + +0.5
180,623 - -0.6
180,623 - -0.2
180,657 - -0.3
180,657 - +0.2
180,668 - +0.3
180,669 - -0.5
181,662 + +0.4
181,686 - -1.0
181,720 + -2.1
181,722 - -1.2
181,722 - +0.1
181,725 + -0.7
181,725 + -0.3
181,725 + -0.6
181,725 + -0.1
181,725 + -0.4
181,725 + +0.1
181,725 + -0.4
181,725 + -0.1
181,733 - +1.1
181,733 - +0.4
181,743 + -0.4
181,753 + +0.2
181,767 + +0.3
181,767 + -0.3
181,767 + +0.1
181,775 - +0.8
181,813 + +0.2
181,818 + -0.3
181,821 - -0.9
181,821 - +0.2
181,826 - +0.3
181,831 + -0.0
181,839 - +0.5
181,844 - -0.3
181,853 + -1.7
181,864 - +0.1
181,885 + +0.6
181,893 - +0.1

Or see this region's nucleotide sequence