Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000650 and TX73_000655 are separated by 22 nucleotides TX73_000655 and TX73_000660 overlap by 4 nucleotides TX73_000660 and TX73_000665 are separated by 7 nucleotides
TX73_000650: TX73_000650 - ABC transporter substrate-binding protein, at 142,363 to 143,643
_000650
TX73_000655: TX73_000655 - carbohydrate ABC transporter permease, at 143,666 to 144,502
_000655
TX73_000660: TX73_000660 - sugar ABC transporter permease, at 144,499 to 145,443
_000660
TX73_000665: TX73_000665 - ABC transporter ATP-binding protein, at 145,451 to 146,605
_000665
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2
3 at 143.541 kb on + strand at 143.573 kb on - strand at 143.598 kb on - strand at 143.660 kb on - strand at 143.683 kb on + strand at 143.826 kb on + strand, within TX73_000655 at 143.826 kb on + strand, within TX73_000655 at 144.017 kb on - strand, within TX73_000655 at 144.044 kb on - strand, within TX73_000655 at 144.189 kb on + strand, within TX73_000655 at 144.243 kb on - strand, within TX73_000655 at 144.332 kb on - strand, within TX73_000655 at 144.369 kb on + strand, within TX73_000655 at 144.377 kb on - strand, within TX73_000655 at 144.396 kb on - strand, within TX73_000655 at 144.408 kb on + strand, within TX73_000655 at 144.428 kb on + strand at 144.446 kb on + strand at 144.484 kb on - strand at 144.565 kb on + strand at 144.576 kb on - strand at 144.590 kb on - strand at 144.668 kb on + strand, within TX73_000660 at 144.668 kb on + strand, within TX73_000660 at 144.856 kb on + strand, within TX73_000660 at 144.905 kb on + strand, within TX73_000660 at 144.908 kb on + strand, within TX73_000660 at 144.915 kb on - strand, within TX73_000660 at 145.152 kb on + strand, within TX73_000660 at 145.160 kb on - strand, within TX73_000660 at 145.160 kb on - strand, within TX73_000660 at 145.273 kb on - strand, within TX73_000660 at 145.310 kb on + strand, within TX73_000660 at 145.397 kb on + strand at 145.399 kb on + strand at 145.441 kb on - strand at 145.457 kb on - strand at 145.465 kb on + strand at 145.501 kb on - strand at 145.559 kb on + strand at 145.559 kb on - strand at 145.622 kb on + strand, within TX73_000665 at 145.627 kb on + strand, within TX73_000665 at 145.637 kb on + strand, within TX73_000665 at 145.654 kb on - strand, within TX73_000665 at 145.675 kb on - strand, within TX73_000665 at 145.719 kb on - strand, within TX73_000665 at 145.790 kb on - strand, within TX73_000665 at 145.808 kb on + strand, within TX73_000665 at 145.837 kb on + strand, within TX73_000665 at 145.879 kb on + strand, within TX73_000665 at 145.902 kb on + strand, within TX73_000665 at 145.962 kb on + strand, within TX73_000665 at 145.970 kb on - strand, within TX73_000665 at 145.976 kb on - strand, within TX73_000665 at 146.025 kb on + strand, within TX73_000665 at 146.058 kb on - strand, within TX73_000665 at 146.145 kb on + strand, within TX73_000665 at 146.150 kb on - strand, within TX73_000665 at 146.153 kb on - strand, within TX73_000665 at 146.153 kb on - strand, within TX73_000665 at 146.219 kb on - strand, within TX73_000665 at 146.235 kb on + strand, within TX73_000665 at 146.246 kb on + strand, within TX73_000665 at 146.279 kb on + strand, within TX73_000665 at 146.287 kb on - strand, within TX73_000665
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 143,541 + -1.0 143,573 - +0.7 143,598 - +1.0 143,660 - -0.3 143,683 + -0.9 143,826 + TX73_000655 0.19 +0.5 143,826 + TX73_000655 0.19 +0.2 144,017 - TX73_000655 0.42 +1.1 144,044 - TX73_000655 0.45 -1.0 144,189 + TX73_000655 0.62 +0.9 144,243 - TX73_000655 0.69 +0.1 144,332 - TX73_000655 0.80 -1.5 144,369 + TX73_000655 0.84 +0.1 144,377 - TX73_000655 0.85 -1.0 144,396 - TX73_000655 0.87 +0.8 144,408 + TX73_000655 0.89 -0.3 144,428 + +1.2 144,446 + -0.5 144,484 - +1.1 144,565 + +0.8 144,576 - -0.4 144,590 - -0.1 144,668 + TX73_000660 0.18 -1.5 144,668 + TX73_000660 0.18 +0.1 144,856 + TX73_000660 0.38 +0.9 144,905 + TX73_000660 0.43 -0.1 144,908 + TX73_000660 0.43 +0.7 144,915 - TX73_000660 0.44 +0.7 145,152 + TX73_000660 0.69 +0.7 145,160 - TX73_000660 0.70 +1.3 145,160 - TX73_000660 0.70 -1.1 145,273 - TX73_000660 0.82 +0.7 145,310 + TX73_000660 0.86 +0.7 145,397 + +1.4 145,399 + +0.1 145,441 - +0.8 145,457 - +0.5 145,465 + -1.3 145,501 - +0.3 145,559 + -0.4 145,559 - +0.1 145,622 + TX73_000665 0.15 -0.4 145,627 + TX73_000665 0.15 +0.5 145,637 + TX73_000665 0.16 -0.3 145,654 - TX73_000665 0.18 +0.3 145,675 - TX73_000665 0.19 +3.0 145,719 - TX73_000665 0.23 +1.0 145,790 - TX73_000665 0.29 +0.5 145,808 + TX73_000665 0.31 +1.0 145,837 + TX73_000665 0.33 +0.6 145,879 + TX73_000665 0.37 -0.4 145,902 + TX73_000665 0.39 -0.5 145,962 + TX73_000665 0.44 +0.3 145,970 - TX73_000665 0.45 -0.7 145,976 - TX73_000665 0.45 -0.1 146,025 + TX73_000665 0.50 +0.2 146,058 - TX73_000665 0.53 +0.9 146,145 + TX73_000665 0.60 -0.3 146,150 - TX73_000665 0.61 -0.1 146,153 - TX73_000665 0.61 +0.3 146,153 - TX73_000665 0.61 +0.2 146,219 - TX73_000665 0.66 -0.4 146,235 + TX73_000665 0.68 -0.2 146,246 + TX73_000665 0.69 +0.2 146,279 + TX73_000665 0.72 -0.2 146,287 - TX73_000665 0.72 +0.5
Or see this region's nucleotide sequence