Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015765

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
3,447,968	+				+3.8
3,447,971	-				+1.1
3,447,971	-				+1.8
3,447,984	+				-1.4
3,448,036	+				+4.0
3,448,044	-				+3.3
3,448,065	+				+3.7
3,448,112	-				+3.2
3,448,141	-		TX73_015760	0.13	+2.4
3,448,141	-		TX73_015760	0.13	+3.6
3,448,141	-		TX73_015760	0.13	+3.6
3,448,170	+		TX73_015760	0.16	+3.3
3,448,187	+		TX73_015760	0.18	+3.4
3,448,194	+		TX73_015760	0.19	+3.1
3,448,196	+		TX73_015760	0.19	+3.1
3,448,211	+		TX73_015760	0.21	+3.4
3,448,211	+		TX73_015760	0.21	+3.0
3,448,298	-		TX73_015760	0.30	+3.2
3,448,299	-		TX73_015760	0.30	+3.1
3,448,318	+		TX73_015760	0.32	+2.7
3,448,330	-		TX73_015760	0.34	+3.2
3,448,345	+		TX73_015760	0.35	+3.4
3,448,345	+		TX73_015760	0.35	+3.3
3,448,345	+		TX73_015760	0.35	+3.4
3,448,353	-		TX73_015760	0.36	+3.6
3,448,387	+		TX73_015760	0.40	+3.3
3,448,388	-		TX73_015760	0.40	+3.4
3,448,393	+		TX73_015760	0.40	+2.4
3,448,394	-		TX73_015760	0.40	+3.6
3,448,419	-		TX73_015760	0.43	+3.2
3,448,441	-		TX73_015760	0.46	+3.6
3,448,458	+		TX73_015760	0.47	+3.5
3,448,516	-		TX73_015760	0.54	+3.4
3,448,517	+		TX73_015760	0.54	+3.5
3,448,611	+		TX73_015760	0.64	+3.1
3,448,619	-		TX73_015760	0.65	+3.5
3,448,686	+		TX73_015760	0.72	+3.6
3,448,726	-		TX73_015760	0.76	+3.2
3,448,735	+		TX73_015760	0.77	+3.8
3,448,743	+		TX73_015760	0.78	+3.6
3,448,743	-		TX73_015760	0.78	+3.1
3,448,743	-		TX73_015760	0.78	+3.5
3,448,764	+		TX73_015760	0.81	+3.6
3,448,764	+		TX73_015760	0.81	+3.2
3,448,771	-		TX73_015760	0.81	+3.6
3,448,772	-		TX73_015760	0.81	+3.3
3,448,803	-		TX73_015760	0.85	+3.4
3,448,803	-		TX73_015760	0.85	+3.7
3,448,851	-				+3.4
3,448,851	-				+2.8
3,448,861	-				+3.0
3,448,861	-				+3.5
3,448,861	-				+3.3
3,448,866	-				+3.7
3,448,932	+				+3.7
3,448,945	-				+0.2
3,448,989	-				-0.4
3,449,136	+		TX73_015765	0.11	+0.8
3,449,139	-		TX73_015765	0.12	+0.5
3,449,144	-		TX73_015765	0.12	+1.7
3,449,293	-		TX73_015765	0.22	+1.1
3,449,294	+		TX73_015765	0.22	+0.5
3,449,351	+		TX73_015765	0.26	+1.3
3,449,359	-		TX73_015765	0.26	+1.1
3,449,382	+		TX73_015765	0.28	-1.0
3,449,414	+		TX73_015765	0.30	+0.8
3,449,440	-		TX73_015765	0.32	-0.4
3,449,515	-		TX73_015765	0.37	-1.4
3,449,524	+		TX73_015765	0.37	+0.8
3,449,529	+		TX73_015765	0.37	+0.2
3,449,532	-		TX73_015765	0.38	-0.1
3,449,547	-		TX73_015765	0.39	+0.0
3,449,601	-		TX73_015765	0.42	-2.4
3,449,685	-		TX73_015765	0.48	+2.3
3,449,781	+		TX73_015765	0.54	+1.4
3,449,786	+		TX73_015765	0.55	+0.4
3,449,789	-		TX73_015765	0.55	-0.4
3,449,826	-		TX73_015765	0.57	-0.0
3,449,881	+		TX73_015765	0.61	+1.0
3,449,881	+		TX73_015765	0.61	+1.8
3,449,881	+		TX73_015765	0.61	+1.0
3,449,881	+		TX73_015765	0.61	-0.9
3,449,881	+		TX73_015765	0.61	+0.6
3,449,889	-		TX73_015765	0.61	-0.1
3,449,889	-		TX73_015765	0.61	+0.3
3,449,889	-		TX73_015765	0.61	+0.8
3,449,889	-		TX73_015765	0.61	+2.2
3,449,958	+		TX73_015765	0.66	+1.5
3,449,963	+		TX73_015765	0.66	+2.2
3,449,992	+		TX73_015765	0.68	+1.0
3,449,992	+		TX73_015765	0.68	+2.2
3,449,993	-		TX73_015765	0.68	+0.8
3,450,000	-		TX73_015765	0.69	+1.3
3,450,033	-		TX73_015765	0.71	+1.4
3,450,034	-		TX73_015765	0.71	+1.1
3,450,034	-		TX73_015765	0.71	+0.5
3,450,069	+		TX73_015765	0.73	-0.5
3,450,071	-		TX73_015765	0.73	-0.7
3,450,126	+		TX73_015765	0.77	+1.3
3,450,126	-		TX73_015765	0.77	+1.1
3,450,145	+		TX73_015765	0.78	+1.7
3,450,153	-		TX73_015765	0.79	+0.7
3,450,173	+		TX73_015765	0.80	-0.2
3,450,178	+		TX73_015765	0.81	+1.8
3,450,182	-		TX73_015765	0.81	+1.1
3,450,183	+		TX73_015765	0.81	-0.3
3,450,224	-		TX73_015765	0.84	+0.7
3,450,226	+		TX73_015765	0.84	+1.7
3,450,230	-		TX73_015765	0.84	+0.5
3,450,234	-		TX73_015765	0.84	+0.7
3,450,240	-		TX73_015765	0.85	+1.6
3,450,241	+		TX73_015765	0.85	+1.7
3,450,249	-		TX73_015765	0.85	+0.6
3,450,316	+		TX73_015765	0.90	+1.2
3,450,323	-				+0.2
3,450,331	-				+1.0
3,450,342	-				+0.3
3,450,364	+				+0.3
3,450,443	+				+1.0
3,450,567	+				-0.6
3,450,705	-		TX73_015770	0.10	-3.1
3,450,715	-		TX73_015770	0.10	-4.0
3,450,728	-		TX73_015770	0.11	-1.5
3,450,733	+		TX73_015770	0.11	-3.5
3,450,738	-		TX73_015770	0.12	-3.0
3,450,745	+		TX73_015770	0.12	-2.6
3,450,753	-		TX73_015770	0.12	-1.7
3,450,758	-		TX73_015770	0.12	-2.3
3,450,809	-		TX73_015770	0.15	-3.4
3,450,809	-		TX73_015770	0.15	-2.7
3,450,809	-		TX73_015770	0.15	-2.0
3,450,825	+		TX73_015770	0.15	-4.1
3,450,828	-		TX73_015770	0.16	-2.6
3,450,840	-		TX73_015770	0.16	-2.7
3,450,840	-		TX73_015770	0.16	-3.1
3,450,885	+		TX73_015770	0.18	-1.6
3,450,904	-		TX73_015770	0.19	-3.6
3,450,931	-		TX73_015770	0.20	-2.4
3,450,953	+		TX73_015770	0.21	-2.3
3,450,961	-		TX73_015770	0.22	-1.2
3,450,961	-		TX73_015770	0.22	-3.3
3,450,964	+		TX73_015770	0.22	-3.0
3,450,964	+		TX73_015770	0.22	-3.4
3,450,964	+		TX73_015770	0.22	-2.1
3,450,972	-		TX73_015770	0.22	-1.9
3,450,972	-		TX73_015770	0.22	-2.9
3,450,976	+		TX73_015770	0.22	-2.8
3,450,985	+		TX73_015770	0.23	-1.2
3,450,993	-		TX73_015770	0.23	-3.1
3,450,993	-		TX73_015770	0.23	-2.3
3,450,993	-		TX73_015770	0.23	-2.7
3,450,993	-		TX73_015770	0.23	-1.1
3,451,059	-		TX73_015770	0.26	-2.3
3,451,093	-		TX73_015770	0.28	-3.2
3,451,102	+		TX73_015770	0.28	-3.7
3,451,102	+		TX73_015770	0.28	-2.5
3,451,102	+		TX73_015770	0.28	-2.2
3,451,110	-		TX73_015770	0.28	-4.2
3,451,110	-		TX73_015770	0.28	-2.9
3,451,110	-		TX73_015770	0.28	-2.0
3,451,120	-		TX73_015770	0.29	-2.1
3,451,141	+		TX73_015770	0.30	-2.1
3,451,146	+		TX73_015770	0.30	-3.7
3,451,219	+		TX73_015770	0.33	-1.8
3,451,255	+		TX73_015770	0.35	-1.6
3,451,270	+		TX73_015770	0.36	-2.7
3,451,288	-		TX73_015770	0.36	-3.7
3,451,289	-		TX73_015770	0.36	-3.0
3,451,303	+		TX73_015770	0.37	-2.0
3,451,303	+		TX73_015770	0.37	-1.6
3,451,347	-		TX73_015770	0.39	-3.5
3,451,356	+		TX73_015770	0.39	-2.1
3,451,356	+		TX73_015770	0.39	-2.8
3,451,425	-		TX73_015770	0.43	-0.7