Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015725

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
3,437,804	-		TX73_015720	0.49	+0.7
3,437,804	-		TX73_015720	0.49	+0.7
3,437,836	+		TX73_015720	0.51	+0.2
3,437,836	+		TX73_015720	0.51	+0.1
3,437,836	+		TX73_015720	0.51	-0.1
3,437,836	+		TX73_015720	0.51	-0.1
3,437,844	-		TX73_015720	0.51	+0.0
3,437,844	-		TX73_015720	0.51	-0.7
3,437,912	+		TX73_015720	0.55	-0.8
3,437,949	-		TX73_015720	0.58	-0.3
3,437,974	-		TX73_015720	0.59	+0.6
3,437,974	-		TX73_015720	0.59	+0.8
3,437,984	+		TX73_015720	0.60	+0.2
3,437,984	+		TX73_015720	0.60	-0.1
3,438,019	-		TX73_015720	0.62	-0.8
3,438,019	-		TX73_015720	0.62	+0.6
3,438,058	-		TX73_015720	0.64	-1.3
3,438,058	-		TX73_015720	0.64	-0.3
3,438,061	+		TX73_015720	0.65	-0.2
3,438,068	+		TX73_015720	0.65	+0.9
3,438,068	+		TX73_015720	0.65	-0.3
3,438,068	+		TX73_015720	0.65	-0.8
3,438,068	+		TX73_015720	0.65	+1.0
3,438,071	-		TX73_015720	0.65	+0.6
3,438,076	-		TX73_015720	0.65	+0.1
3,438,089	-		TX73_015720	0.66	+0.1
3,438,118	+		TX73_015720	0.68	-0.0
3,438,118	+		TX73_015720	0.68	-1.1
3,438,126	-		TX73_015720	0.69	+0.3
3,438,131	+		TX73_015720	0.69	-0.1
3,438,138	+		TX73_015720	0.69	-0.6
3,438,138	+		TX73_015720	0.69	-0.6
3,438,139	-		TX73_015720	0.69	-0.2
3,438,146	-		TX73_015720	0.70	-0.6
3,438,210	+		TX73_015720	0.74	-0.2
3,438,237	-		TX73_015720	0.75	-0.3
3,438,244	-		TX73_015720	0.76	+0.1
3,438,259	-		TX73_015720	0.77	-0.2
3,438,269	-		TX73_015720	0.77	-0.4
3,438,272	-		TX73_015720	0.78	-0.2
3,438,283	-		TX73_015720	0.78	+0.3
3,438,293	-		TX73_015720	0.79	+1.1
3,438,299	-		TX73_015720	0.79	+1.1
3,438,321	-		TX73_015720	0.81	+0.5
3,438,341	+		TX73_015720	0.82	+0.2
3,438,342	+		TX73_015720	0.82	-0.5
3,438,345	-		TX73_015720	0.82	+0.3
3,438,349	-		TX73_015720	0.82	-0.4
3,438,349	-		TX73_015720	0.82	+0.2
3,438,353	+		TX73_015720	0.83	+0.3
3,438,358	+		TX73_015720	0.83	+0.4
3,438,358	+		TX73_015720	0.83	-1.6
3,438,366	-		TX73_015720	0.83	+0.0
3,438,428	+		TX73_015720	0.87	-0.2
3,438,502	+				+0.1
3,438,505	-				+0.2
3,438,518	+				-0.1
3,438,525	-				+0.5
3,438,542	+				-0.0
3,438,545	-				-3.1
3,438,560	+				+0.2
3,438,564	-				+0.6
3,438,568	-				-0.4
3,438,570	+				+0.2
3,438,573	-				-0.7
3,438,575	+				-0.6
3,438,578	-				-0.3
3,438,610	+				-0.2
3,438,617	-				-0.5
3,438,624	-				+0.5
3,438,626	+				+0.1
3,438,631	+				-0.4
3,438,634	+				-0.1
3,438,697	+				+0.6
3,438,702	+				+0.2
3,438,702	+				+0.6
3,438,703	+				-0.2
3,438,705	-				-0.5
3,438,709	+				+0.1
3,438,715	+				-1.4
3,438,768	+				+0.1
3,438,809	-				-0.5
3,438,816	+				+0.3
3,438,816	+				+0.2
3,438,821	+				-0.4
3,438,828	+				-0.0
3,438,837	+				-0.2
3,438,847	+				-0.2
3,438,882	+		TX73_015725	0.10	+0.5
3,438,882	+		TX73_015725	0.10	-0.3
3,438,890	-		TX73_015725	0.11	+0.8
3,438,900	-		TX73_015725	0.12	-0.7
3,438,900	-		TX73_015725	0.12	-1.4
3,438,918	-		TX73_015725	0.14	+0.1
3,438,936	-		TX73_015725	0.16	+0.3
3,438,938	+		TX73_015725	0.16	-1.0
3,438,949	+		TX73_015725	0.17	+0.7
3,438,951	-		TX73_015725	0.18	-0.4
3,438,951	-		TX73_015725	0.18	-0.3
3,438,957	-		TX73_015725	0.18	-0.4
3,438,958	+		TX73_015725	0.18	-1.1
3,438,983	+		TX73_015725	0.21	+0.5
3,438,986	-		TX73_015725	0.21	-1.5
3,439,013	-		TX73_015725	0.24	-0.9
3,439,029	+		TX73_015725	0.26	+0.1
3,439,067	-		TX73_015725	0.30	+0.2
3,439,069	-		TX73_015725	0.30	-0.5
3,439,078	+		TX73_015725	0.31	+1.7
3,439,086	-		TX73_015725	0.32	+0.7
3,439,104	+		TX73_015725	0.34	-0.4
3,439,106	+		TX73_015725	0.34	+0.7
3,439,160	+		TX73_015725	0.40	+0.1
3,439,175	-		TX73_015725	0.41	+0.1
3,439,213	+		TX73_015725	0.45	-0.3
3,439,213	+		TX73_015725	0.45	-0.1
3,439,213	+		TX73_015725	0.45	-0.4
3,439,221	-		TX73_015725	0.46	+0.2
3,439,274	+		TX73_015725	0.52	-0.9
3,439,282	-		TX73_015725	0.53	-0.2
3,439,282	-		TX73_015725	0.53	+0.9
3,439,295	+		TX73_015725	0.54	-0.4
3,439,356	+		TX73_015725	0.61	+0.0
3,439,359	-		TX73_015725	0.61	+0.4
3,439,364	-		TX73_015725	0.62	+0.5
3,439,364	-		TX73_015725	0.62	+0.1
3,439,369	-		TX73_015725	0.62	+0.0
3,439,392	-		TX73_015725	0.65	+0.3
3,439,404	-		TX73_015725	0.66	-0.2
3,439,438	+		TX73_015725	0.69	-0.9
3,439,438	+		TX73_015725	0.69	-0.5
3,439,453	+		TX73_015725	0.71	-0.2
3,439,455	+		TX73_015725	0.71	-1.5
3,439,472	-		TX73_015725	0.73	-0.3
3,439,480	-		TX73_015725	0.74	+0.8
3,439,507	-		TX73_015725	0.77	+0.8
3,439,520	-		TX73_015725	0.78	-0.9
3,439,533	-		TX73_015725	0.80	+0.9
3,439,542	+		TX73_015725	0.81	-0.2
3,439,586	+		TX73_015725	0.85	-0.5
3,439,629	+		TX73_015725	0.90	-0.3
3,439,637	+				-0.0
3,439,645	-				+0.4
3,439,652	+				+0.2
3,439,661	-				-0.2
3,439,676	+				-0.6
3,439,684	-				-0.1
3,439,704	+				-0.6
3,439,860	-		TX73_015730	0.17	-0.7
3,439,860	-		TX73_015730	0.17	-2.4
3,439,868	-		TX73_015730	0.19	-1.1
3,439,868	-		TX73_015730	0.19	-0.0
3,439,868	-		TX73_015730	0.19	-0.5
3,439,870	-		TX73_015730	0.19	-1.6
3,439,883	-		TX73_015730	0.21	-2.1
3,439,934	-		TX73_015730	0.30	-0.8
3,439,981	+		TX73_015730	0.39	-0.3
3,440,008	-		TX73_015730	0.44	-0.6
3,440,028	+		TX73_015730	0.47	-1.3
3,440,036	-		TX73_015730	0.49	-1.2
3,440,039	-		TX73_015730	0.49	-0.8
3,440,064	-		TX73_015730	0.54	-0.4
3,440,077	+		TX73_015730	0.56	-0.4
3,440,119	-		TX73_015730	0.63	-2.1
3,440,119	-		TX73_015730	0.63	-0.9
3,440,150	-		TX73_015730	0.69	-1.7
3,440,158	-		TX73_015730	0.70	-0.4
3,440,168	-		TX73_015730	0.72	-0.7
3,440,170	+		TX73_015730	0.72	-0.6
3,440,212	-		TX73_015730	0.80	-1.2
3,440,213	+		TX73_015730	0.80	-0.6
3,440,228	-		TX73_015730	0.83	-0.7
3,440,239	-		TX73_015730	0.85	-1.3
3,440,243	-		TX73_015730	0.85	-1.4
3,440,245	+		TX73_015730	0.86	-0.3
3,440,252	+		TX73_015730	0.87	-0.3
3,440,252	+		TX73_015730	0.87	-0.6
3,440,252	+		TX73_015730	0.87	-0.9
3,440,256	+		TX73_015730	0.88	-1.5
3,440,260	-		TX73_015730	0.88	-1.2
3,440,260	-		TX73_015730	0.88	-0.4
3,440,260	-		TX73_015730	0.88	-0.3
3,440,264	-		TX73_015730	0.89	-1.2
3,440,277	+				-1.4
3,440,296	-				+0.2
3,440,316	-				+0.3
3,440,327	+				-0.6
3,440,327	+				+0.2
3,440,330	-				-0.6
3,440,334	-				-1.1
3,440,334	-				-0.3
3,440,335	-				-0.5
3,440,338	+				-0.2
3,440,346	-				-0.1
3,440,370	-				-0.0
3,440,382	-		TX73_015735	0.12	+0.0
3,440,402	-		TX73_015735	0.17	-0.2
3,440,404	+		TX73_015735	0.17	+0.0
3,440,505	+		TX73_015735	0.40	-0.2
3,440,546	+		TX73_015735	0.50	-0.4
3,440,546	+		TX73_015735	0.50	-0.4
3,440,546	+		TX73_015735	0.50	-0.3
3,440,554	-		TX73_015735	0.51	-0.8
3,440,586	+		TX73_015735	0.59	+0.3
3,440,587	-		TX73_015735	0.59	-0.7
3,440,678	+		TX73_015735	0.80	+0.4
3,440,697	+		TX73_015735	0.84	+0.2
3,440,705	-		TX73_015735	0.86	-0.0
3,440,705	-		TX73_015735	0.86	+0.6
3,440,713	-		TX73_015735	0.88	+0.3