Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014790

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
3,231,143	+		TX73_014785	0.28	+0.1
3,231,232	+		TX73_014785	0.36	+0.0
3,231,250	+		TX73_014785	0.37	-0.1
3,231,276	+		TX73_014785	0.39	-0.2
3,231,284	-		TX73_014785	0.40	+0.2
3,231,308	-		TX73_014785	0.42	+0.3
3,231,308	-		TX73_014785	0.42	-0.3
3,231,332	+		TX73_014785	0.44	-0.4
3,231,341	-		TX73_014785	0.45	-0.1
3,231,346	+		TX73_014785	0.45	-0.5
3,231,352	-		TX73_014785	0.46	+0.0
3,231,353	-		TX73_014785	0.46	-0.3
3,231,402	-		TX73_014785	0.50	-0.1
3,231,416	+		TX73_014785	0.51	-0.1
3,231,417	+		TX73_014785	0.51	-0.3
3,231,425	-		TX73_014785	0.52	-0.1
3,231,425	-		TX73_014785	0.52	+0.2
3,231,425	-		TX73_014785	0.52	-1.4
3,231,459	-		TX73_014785	0.54	-0.7
3,231,475	+		TX73_014785	0.56	+0.2
3,231,475	+		TX73_014785	0.56	+0.8
3,231,475	+		TX73_014785	0.56	-0.7
3,231,483	-		TX73_014785	0.56	-0.2
3,231,483	-		TX73_014785	0.56	-0.0
3,231,483	-		TX73_014785	0.56	-0.3
3,231,483	-		TX73_014785	0.56	-0.9
3,231,483	-		TX73_014785	0.56	-0.1
3,231,485	+		TX73_014785	0.57	-0.1
3,231,527	+		TX73_014785	0.60	-0.2
3,231,527	+		TX73_014785	0.60	+1.4
3,231,535	-		TX73_014785	0.61	+0.0
3,231,539	+		TX73_014785	0.61	+0.5
3,231,551	+		TX73_014785	0.62	-0.7
3,231,560	-		TX73_014785	0.63	+0.4
3,231,560	-		TX73_014785	0.63	-0.2
3,231,562	+		TX73_014785	0.63	-0.8
3,231,562	+		TX73_014785	0.63	+0.4
3,231,562	+		TX73_014785	0.63	+0.6
3,231,570	-		TX73_014785	0.64	-0.9
3,231,570	-		TX73_014785	0.64	+0.8
3,231,582	+		TX73_014785	0.65	-0.2
3,231,582	+		TX73_014785	0.65	-0.3
3,231,617	+		TX73_014785	0.67	-1.0
3,231,649	+		TX73_014785	0.70	-0.3
3,231,649	+		TX73_014785	0.70	-0.0
3,231,657	-		TX73_014785	0.71	-0.7
3,231,657	-		TX73_014785	0.71	-0.4
3,231,668	+		TX73_014785	0.72	+0.4
3,231,718	+		TX73_014785	0.76	-0.3
3,231,718	+		TX73_014785	0.76	+0.0
3,231,726	-		TX73_014785	0.76	-0.3
3,231,726	-		TX73_014785	0.76	+0.1
3,231,731	+		TX73_014785	0.77	+0.3
3,231,737	+		TX73_014785	0.77	-0.3
3,231,742	+		TX73_014785	0.78	-0.3
3,231,766	+		TX73_014785	0.80	-0.1
3,231,766	+		TX73_014785	0.80	-0.2
3,231,771	+		TX73_014785	0.80	-0.1
3,231,774	-		TX73_014785	0.80	-0.5
3,231,774	-		TX73_014785	0.80	+0.4
3,231,787	+		TX73_014785	0.81	+0.3
3,231,787	+		TX73_014785	0.81	+0.2
3,231,787	+		TX73_014785	0.81	+0.1
3,231,795	-		TX73_014785	0.82	+0.5
3,231,795	-		TX73_014785	0.82	-0.4
3,231,795	-		TX73_014785	0.82	-1.1
3,231,795	-		TX73_014785	0.82	-1.5
3,231,795	-		TX73_014785	0.82	+0.9
3,231,818	-		TX73_014785	0.84	-0.1
3,231,842	+		TX73_014785	0.86	+1.0
3,231,842	+		TX73_014785	0.86	+0.7
3,231,842	+		TX73_014785	0.86	+0.6
3,231,842	+		TX73_014785	0.86	-0.4
3,231,850	-		TX73_014785	0.87	-0.2
3,231,850	-		TX73_014785	0.87	-0.2
3,231,883	+		TX73_014785	0.89	+0.1
3,231,893	+				-1.8
3,231,915	+				-0.1
3,231,974	+				+0.5
3,231,982	-				-0.4
3,231,987	-				-0.9
3,232,082	-				+0.7
3,232,090	+				+0.4
3,232,096	+				-0.2
3,232,104	+				-0.3
3,232,104	+				+1.1
3,232,104	-				-0.5
3,232,109	-				+0.4
3,232,181	-		TX73_014790	0.19	-3.5
3,232,182	+		TX73_014790	0.19	-3.1
3,232,188	+		TX73_014790	0.21	-3.8
3,232,188	+		TX73_014790	0.21	-3.6
3,232,190	-		TX73_014790	0.21	-2.5
3,232,196	-		TX73_014790	0.23	-3.5
3,232,203	+		TX73_014790	0.25	-1.4
3,232,211	-		TX73_014790	0.28	-4.2
3,232,213	+		TX73_014790	0.28	-3.6
3,232,222	-		TX73_014790	0.31	-2.9
3,232,265	+		TX73_014790	0.44	-2.9
3,232,265	+		TX73_014790	0.44	-3.0
3,232,265	+		TX73_014790	0.44	-1.1
3,232,265	+		TX73_014790	0.44	-3.5
3,232,273	-		TX73_014790	0.46	-2.3
3,232,281	+		TX73_014790	0.49	-1.5
3,232,289	-		TX73_014790	0.51	-3.5
3,232,327	+		TX73_014790	0.62	-2.6
3,232,332	+		TX73_014790	0.64	-2.3
3,232,410	+		TX73_014790	0.87	-1.2
3,232,411	-		TX73_014790	0.88	-3.7
3,232,421	-				-0.8
3,232,465	+				-0.1
3,232,483	+				+1.0
3,232,491	-				+0.7
3,232,587	+				-0.7
3,232,607	+				-0.4
3,232,615	-				+0.4
3,232,643	+				+0.9
3,232,644	-				+0.3
3,232,647	+				-0.4
3,232,648	+				+0.1
3,232,656	-				-0.2
3,232,669	+				-0.9
3,232,685	-				-1.0
3,232,688	+				-0.8
3,232,691	+				+0.4
3,232,691	+				-0.3
3,232,698	-				-0.4
3,232,700	-				-0.1
3,232,734	+				-0.4
3,232,738	-				+1.1
3,232,741	+				-0.1
3,232,747	-				-0.4
3,232,765	-				-0.4
3,232,770	+				+0.6
3,232,778	-				-0.0
3,232,778	-				-0.0
3,232,787	+		TX73_014795	0.10	+0.5
3,232,810	-		TX73_014795	0.13	+0.6
3,232,843	-		TX73_014795	0.16	-0.2
3,232,862	-		TX73_014795	0.18	+0.7
3,232,866	-		TX73_014795	0.18	-2.0
3,232,871	+		TX73_014795	0.19	+0.2
3,232,876	+		TX73_014795	0.19	-0.3
3,232,884	-		TX73_014795	0.20	-0.8
3,232,900	+		TX73_014795	0.21	-0.2
3,232,900	+		TX73_014795	0.21	+0.0
3,232,903	-		TX73_014795	0.22	-0.5
3,232,908	-		TX73_014795	0.22	-0.4
3,232,908	-		TX73_014795	0.22	-1.0
3,232,950	+		TX73_014795	0.26	+0.7
3,232,960	-		TX73_014795	0.27	+0.1
3,232,960	-		TX73_014795	0.27	+1.4
3,232,960	-		TX73_014795	0.27	-0.7
3,232,999	-		TX73_014795	0.31	-0.5
3,232,999	-		TX73_014795	0.31	-0.7
3,233,008	-		TX73_014795	0.32	-0.5
3,233,024	+		TX73_014795	0.34	+0.5
3,233,050	+		TX73_014795	0.36	+0.1
3,233,051	+		TX73_014795	0.36	+0.2
3,233,054	+		TX73_014795	0.37	+0.1
3,233,180	-		TX73_014795	0.49	+0.2
3,233,185	-		TX73_014795	0.50	-1.0
3,233,190	+		TX73_014795	0.50	+0.1
3,233,198	+		TX73_014795	0.51	+0.0
3,233,198	-		TX73_014795	0.51	+0.1
3,233,198	-		TX73_014795	0.51	-0.5
3,233,230	+		TX73_014795	0.54	+0.5
3,233,269	+		TX73_014795	0.58	+0.3
3,233,269	+		TX73_014795	0.58	+0.4
3,233,269	+		TX73_014795	0.58	+0.1
3,233,269	+		TX73_014795	0.58	-0.1
3,233,269	+		TX73_014795	0.58	-0.6
3,233,277	-		TX73_014795	0.59	+0.7
3,233,277	-		TX73_014795	0.59	-0.0
3,233,281	+		TX73_014795	0.59	-0.5
3,233,281	+		TX73_014795	0.59	-0.8
3,233,284	-		TX73_014795	0.59	-0.3
3,233,311	-		TX73_014795	0.62	+0.2
3,233,311	-		TX73_014795	0.62	-0.5
3,233,340	+		TX73_014795	0.65	+0.2
3,233,350	-		TX73_014795	0.66	-0.3
3,233,370	-		TX73_014795	0.68	-0.3
3,233,391	-		TX73_014795	0.70	+0.4
3,233,394	+		TX73_014795	0.70	+0.5
3,233,412	-		TX73_014795	0.72	-0.4
3,233,412	-		TX73_014795	0.72	-0.4
3,233,448	+		TX73_014795	0.76	+0.7
3,233,450	+		TX73_014795	0.76	+0.1
3,233,450	+		TX73_014795	0.76	+0.2