Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013910

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
3,056,691	+				-0.3
3,056,696	+				+0.4
3,056,696	+				-0.3
3,056,696	+				-0.8
3,056,704	-				-0.0
3,056,704	-				-1.0
3,056,709	-				-0.7
3,056,733	-				+0.9
3,056,747	+				-0.3
3,056,750	-				+0.0
3,056,755	-				-1.2
3,056,808	+				-1.1
3,056,849	-		TX73_013905	0.15	+0.1
3,056,905	+		TX73_013905	0.23	+0.7
3,056,924	+		TX73_013905	0.26	-0.3
3,056,932	-		TX73_013905	0.27	+0.0
3,056,947	+		TX73_013905	0.29	-0.5
3,056,976	+		TX73_013905	0.33	-0.3
3,057,017	+		TX73_013905	0.38	+0.6
3,057,017	+		TX73_013905	0.38	-0.5
3,057,052	+		TX73_013905	0.43	+0.8
3,057,052	+		TX73_013905	0.43	+1.6
3,057,117	-		TX73_013905	0.52	-0.7
3,057,122	+		TX73_013905	0.53	+1.2
3,057,130	-		TX73_013905	0.54	-0.6
3,057,141	-		TX73_013905	0.55	+0.2
3,057,150	-		TX73_013905	0.57	-1.5
3,057,225	-		TX73_013905	0.67	-0.4
3,057,237	+		TX73_013905	0.68	+0.3
3,057,237	+		TX73_013905	0.68	+1.9
3,057,245	-		TX73_013905	0.70	-0.2
3,057,246	-		TX73_013905	0.70	-0.7
3,057,267	-		TX73_013905	0.73	-0.1
3,057,326	-		TX73_013905	0.81	+0.3
3,057,447	-				+0.0
3,057,447	-				+0.2
3,057,451	+				+0.1
3,057,462	-				-0.3
3,057,526	-				+0.3
3,057,615	+				-0.5
3,057,621	-				-1.1
3,057,671	+				-0.6
3,057,677	-				-0.3
3,057,683	+				+0.1
3,057,689	-				+0.5
3,057,689	-				-1.6
3,057,691	+				-0.4
3,057,705	-				+0.1
3,057,750	-				-1.7
3,057,753	-				-0.2
3,057,755	+				+0.1
3,057,760	+		TX73_013910	0.10	+0.0
3,057,763	-		TX73_013910	0.11	-0.8
3,057,763	-		TX73_013910	0.11	-0.5
3,057,765	+		TX73_013910	0.11	+0.0
3,057,790	+		TX73_013910	0.14	-0.3
3,057,875	-		TX73_013910	0.26	-0.2
3,057,884	+		TX73_013910	0.28	-0.3
3,057,884	+		TX73_013910	0.28	-0.2
3,057,884	+		TX73_013910	0.28	-0.4
3,057,884	+		TX73_013910	0.28	-0.4
3,057,884	+		TX73_013910	0.28	-0.3
3,057,887	-		TX73_013910	0.28	-0.0
3,057,908	-		TX73_013910	0.31	-1.9
3,057,938	-		TX73_013910	0.35	+0.3
3,057,950	+		TX73_013910	0.37	+0.2
3,057,963	-		TX73_013910	0.39	-1.2
3,057,998	+		TX73_013910	0.44	-0.2
3,058,019	-		TX73_013910	0.46	-0.1
3,058,029	-		TX73_013910	0.48	-0.2
3,058,068	+		TX73_013910	0.53	-0.1
3,058,068	+		TX73_013910	0.53	+0.1
3,058,068	+		TX73_013910	0.53	-0.3
3,058,075	+		TX73_013910	0.54	+0.1
3,058,076	-		TX73_013910	0.54	-0.6
3,058,076	-		TX73_013910	0.54	-0.2
3,058,078	-		TX73_013910	0.55	+0.2
3,058,102	-		TX73_013910	0.58	+0.2
3,058,136	-		TX73_013910	0.63	+0.4
3,058,136	-		TX73_013910	0.63	+0.7
3,058,152	-		TX73_013910	0.65	+0.6
3,058,176	-		TX73_013910	0.68	-0.3
3,058,181	+		TX73_013910	0.69	-0.9
3,058,183	+		TX73_013910	0.69	-1.0
3,058,206	+		TX73_013910	0.73	+0.6
3,058,206	+		TX73_013910	0.73	-0.1
3,058,206	+		TX73_013910	0.73	-0.7
3,058,211	+		TX73_013910	0.73	-0.4
3,058,214	-		TX73_013910	0.74	+0.3
3,058,214	-		TX73_013910	0.74	+0.0
3,058,219	-		TX73_013910	0.75	-0.1
3,058,229	-		TX73_013910	0.76	+0.8
3,058,239	+		TX73_013910	0.77	-0.7
3,058,241	+		TX73_013910	0.78	+0.3
3,058,246	+		TX73_013910	0.78	-0.6
3,058,246	+		TX73_013910	0.78	-0.7
3,058,246	+		TX73_013910	0.78	+0.5
3,058,247	-		TX73_013910	0.78	+0.8
3,058,249	-		TX73_013910	0.79	-0.1
3,058,254	-		TX73_013910	0.79	+0.4
3,058,254	-		TX73_013910	0.79	-0.5
3,058,254	-		TX73_013910	0.79	-1.4
3,058,304	+		TX73_013910	0.86	-0.2
3,058,304	+		TX73_013910	0.86	-0.0
3,058,304	+		TX73_013910	0.86	+0.1
3,058,312	-		TX73_013910	0.88	+0.2
3,058,312	-		TX73_013910	0.88	-0.0
3,058,313	-		TX73_013910	0.88	-0.1
3,058,318	-		TX73_013910	0.88	-0.7
3,058,325	+		TX73_013910	0.89	+0.2
3,058,328	-		TX73_013910	0.90	-1.1
3,058,328	-		TX73_013910	0.90	-0.2
3,058,328	-		TX73_013910	0.90	-0.7
3,058,330	+				+0.2
3,058,338	-				+0.4
3,058,343	-				-0.9
3,058,346	+				+0.6
3,058,361	+				+0.7
3,058,379	+				+0.1
3,058,380	-				+0.2
3,058,394	+				+0.3
3,058,402	-				-1.2
3,058,443	+				-0.7
3,058,445	-				+0.7
3,058,451	-				+0.4
3,058,455	+		TX73_013915	0.10	+0.9
3,058,463	-		TX73_013915	0.12	-0.9
3,058,473	+		TX73_013915	0.15	+0.2
3,058,479	+		TX73_013915	0.16	-0.1
3,058,487	-		TX73_013915	0.18	+0.6
3,058,495	-		TX73_013915	0.20	-1.1
3,058,546	+		TX73_013915	0.33	-1.7
3,058,570	+		TX73_013915	0.38	-0.2
3,058,578	-		TX73_013915	0.40	+0.2
3,058,583	+		TX73_013915	0.42	+0.0
3,058,593	+		TX73_013915	0.44	-0.6
3,058,593	+		TX73_013915	0.44	+0.1
3,058,625	+		TX73_013915	0.52	-0.9
3,058,628	-		TX73_013915	0.53	-1.1
3,058,634	-		TX73_013915	0.54	-1.0
3,058,644	+		TX73_013915	0.57	-0.1
3,058,662	+		TX73_013915	0.61	+1.7
3,058,667	+		TX73_013915	0.62	-0.2
3,058,684	+		TX73_013915	0.66	-0.2
3,058,702	+		TX73_013915	0.71	-0.4
3,058,702	+		TX73_013915	0.71	-0.3
3,058,702	+		TX73_013915	0.71	-0.6
3,058,702	+		TX73_013915	0.71	-1.0
3,058,710	-		TX73_013915	0.73	-0.7
3,058,710	-		TX73_013915	0.73	+0.6
3,058,718	+		TX73_013915	0.75	+0.2
3,058,727	+		TX73_013915	0.77	-0.1
3,058,740	-		TX73_013915	0.80	-0.0
3,058,742	+		TX73_013915	0.81	-0.0
3,058,755	-		TX73_013915	0.84	-0.3
3,058,776	+		TX73_013915	0.89	-0.4
3,058,779	-		TX73_013915	0.90	-0.1
3,058,779	-		TX73_013915	0.90	+0.0
3,058,781	+				+0.3
3,058,784	-				+0.3
3,058,811	+				+0.2
3,058,872	+				-0.0
3,058,873	+				+0.9
3,058,892	+				-0.5
3,058,892	+				-0.1
3,058,892	+				-1.0
3,058,936	-				+0.4
3,058,940	+				-0.3
3,058,943	-				+0.2
3,058,945	+				+0.1
3,058,993	+				-0.3
3,059,040	+				-0.2
3,059,070	+		TX73_013920	0.13	+0.7
3,059,070	+		TX73_013920	0.13	-0.7
3,059,075	-		TX73_013920	0.14	+0.2
3,059,078	-		TX73_013920	0.14	-0.5
3,059,087	+		TX73_013920	0.15	+0.6
3,059,094	+		TX73_013920	0.16	-0.7
3,059,111	+		TX73_013920	0.18	+0.9
3,059,114	-		TX73_013920	0.18	-1.3
3,059,118	+		TX73_013920	0.19	-0.8
3,059,138	+		TX73_013920	0.21	-0.5
3,059,138	+		TX73_013920	0.21	-1.1
3,059,138	+		TX73_013920	0.21	+0.3
3,059,138	+		TX73_013920	0.21	+0.9
3,059,154	-		TX73_013920	0.23	-0.9
3,059,161	+		TX73_013920	0.23	-0.3
3,059,162	+		TX73_013920	0.24	-0.3
3,059,169	-		TX73_013920	0.24	+1.4
3,059,170	-		TX73_013920	0.24	+0.3
3,059,201	+		TX73_013920	0.28	+0.3
3,059,216	+		TX73_013920	0.30	-0.7
3,059,261	+		TX73_013920	0.35	-0.8
3,059,274	-		TX73_013920	0.36	+0.6
3,059,317	+		TX73_013920	0.41	+1.9
3,059,324	+		TX73_013920	0.42	-0.2
3,059,325	-		TX73_013920	0.42	-1.2
3,059,325	-		TX73_013920	0.42	+0.5
3,059,357	+		TX73_013920	0.45	-0.1
3,059,361	+		TX73_013920	0.46	-0.0