Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008535

Experiment: PM with succinate and Sodium Formate aerobic in dark

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate aerobic in dark
1,843,435	-		TX73_008525	0.50	-2.5
1,843,453	+		TX73_008525	0.55	+1.2
1,843,454	+		TX73_008525	0.55	+0.6
1,843,471	-		TX73_008525	0.60	+0.9
1,843,473	+		TX73_008525	0.60	-1.0
1,843,480	+		TX73_008525	0.62	-0.7
1,843,511	-		TX73_008525	0.71	+0.6
1,843,551	+		TX73_008525	0.82	-1.8
1,843,551	+		TX73_008525	0.82	-0.9
1,843,551	+		TX73_008525	0.82	-0.7
1,843,559	-		TX73_008525	0.84	+0.0
1,843,575	-		TX73_008525	0.88	+0.2
1,843,626	-				+1.3
1,843,637	-				+0.9
1,843,637	-				-1.0
1,843,647	-				-0.2
1,843,652	-				+0.3
1,843,654	+				-0.1
1,843,657	-				-0.4
1,843,664	+				+0.3
1,843,672	-				+0.2
1,843,685	-				+0.8
1,843,687	+				+0.4
1,843,731	-				+0.4
1,843,743	+		TX73_008530	0.10	+1.1
1,843,751	+		TX73_008530	0.11	+0.7
1,843,820	+		TX73_008530	0.23	+0.3
1,843,826	+		TX73_008530	0.24	-1.9
1,843,839	+		TX73_008530	0.26	-0.2
1,843,847	-		TX73_008530	0.28	+0.3
1,843,865	+		TX73_008530	0.31	+1.3
1,843,873	+		TX73_008530	0.32	-1.0
1,843,876	-		TX73_008530	0.32	-0.6
1,843,893	+		TX73_008530	0.35	+0.4
1,843,924	+		TX73_008530	0.41	-0.7
1,843,942	+		TX73_008530	0.44	-0.4
1,843,978	+		TX73_008530	0.50	+0.7
1,843,978	+		TX73_008530	0.50	-1.1
1,843,978	+		TX73_008530	0.50	+0.6
1,843,987	-		TX73_008530	0.51	-0.7
1,844,038	+		TX73_008530	0.60	-0.4
1,844,073	+		TX73_008530	0.66	+0.8
1,844,081	-		TX73_008530	0.67	+0.0
1,844,081	-		TX73_008530	0.67	+1.9
1,844,107	-		TX73_008530	0.72	-1.4
1,844,114	-		TX73_008530	0.73	+0.3
1,844,138	-		TX73_008530	0.77	-1.2
1,844,226	-				-0.7
1,844,275	+				-0.9
1,844,374	-				+0.1
1,844,413	-				+0.1
1,844,421	+				+0.1
1,844,442	+				-4.4
1,844,464	-				-2.3
1,844,651	+				-2.8
1,844,651	+				-3.3
1,844,651	+				-2.2
1,844,651	+				-2.3
1,844,651	+				-1.1
1,844,651	+				-1.9
1,844,651	+				-4.0
1,844,651	+				-0.3
1,844,651	+				-1.8
1,844,659	-				-1.9
1,844,659	-				-2.2
1,844,659	-				-2.1
1,844,659	-				-1.1
1,844,659	-				-3.1
1,844,659	-				-1.1
1,844,659	-				-1.5
1,844,659	-				-1.3
1,844,659	-				-1.7
1,844,659	-				-2.1
1,844,659	-				-2.0
1,844,669	-				-1.1
1,844,669	-				-0.9
1,844,672	+				-1.6
1,844,723	+		TX73_008535	0.11	-1.9
1,844,723	+		TX73_008535	0.11	-3.9
1,844,795	+		TX73_008535	0.13	-2.2
1,844,820	-		TX73_008535	0.14	-1.5
1,844,836	-		TX73_008535	0.14	-3.6
1,844,842	-		TX73_008535	0.15	-2.0
1,844,856	+		TX73_008535	0.15	-2.8
1,844,904	-		TX73_008535	0.17	-2.2
1,844,905	+		TX73_008535	0.17	-1.5
1,844,918	-		TX73_008535	0.17	-2.2
1,845,013	-		TX73_008535	0.20	-1.0
1,845,023	-		TX73_008535	0.21	-1.4
1,845,058	-		TX73_008535	0.22	-1.4
1,845,066	+		TX73_008535	0.22	-1.5
1,845,114	+		TX73_008535	0.24	-2.3
1,845,114	+		TX73_008535	0.24	-1.6
1,845,131	+		TX73_008535	0.24	-2.8
1,845,191	+		TX73_008535	0.27	-1.6
1,845,224	-		TX73_008535	0.28	-2.0
1,845,372	-		TX73_008535	0.33	-5.1
1,845,379	-		TX73_008535	0.33	-3.2
1,845,414	-		TX73_008535	0.34	-2.9
1,845,421	-		TX73_008535	0.34	-2.0
1,845,426	-		TX73_008535	0.35	-2.1
1,845,458	+		TX73_008535	0.36	-2.5
1,845,476	-		TX73_008535	0.36	-1.9
1,845,487	+		TX73_008535	0.37	-2.3
1,845,519	+		TX73_008535	0.38	-2.5
1,845,527	-		TX73_008535	0.38	-0.5
1,845,527	-		TX73_008535	0.38	-2.0
1,845,539	-		TX73_008535	0.38	-2.8
1,845,545	-		TX73_008535	0.39	-2.0
1,845,545	-		TX73_008535	0.39	-1.0
1,845,545	-		TX73_008535	0.39	-2.1
1,845,554	+		TX73_008535	0.39	-1.1
1,845,561	-		TX73_008535	0.39	-2.7
1,845,583	+		TX73_008535	0.40	-2.8
1,845,591	-		TX73_008535	0.40	-1.9
1,845,591	-		TX73_008535	0.40	-2.3
1,845,668	-		TX73_008535	0.43	-2.4
1,845,682	+		TX73_008535	0.43	-2.8
1,845,685	-		TX73_008535	0.43	-2.1
1,845,685	-		TX73_008535	0.43	-2.3
1,845,685	-		TX73_008535	0.43	-1.8
1,845,690	-		TX73_008535	0.44	-2.8
1,845,698	+		TX73_008535	0.44	+0.3
1,845,706	-		TX73_008535	0.44	-3.3
1,845,720	+		TX73_008535	0.45	-1.9
1,845,720	+		TX73_008535	0.45	-1.1
1,845,728	+		TX73_008535	0.45	-2.9
1,845,742	-		TX73_008535	0.45	-3.8
1,845,767	-		TX73_008535	0.46	-2.2
1,845,771	+		TX73_008535	0.46	-2.1
1,845,858	+		TX73_008535	0.49	-1.3
1,845,859	-		TX73_008535	0.49	-2.2
1,845,870	+		TX73_008535	0.50	-1.3
1,845,882	+		TX73_008535	0.50	-1.6
1,845,884	+		TX73_008535	0.50	-2.0
1,845,893	+		TX73_008535	0.51	-1.6
1,845,955	+		TX73_008535	0.53	-1.9
1,845,973	-		TX73_008535	0.53	-2.0
1,845,977	+		TX73_008535	0.53	-2.5
1,846,014	+		TX73_008535	0.55	-2.5
1,846,077	+		TX73_008535	0.57	-1.6
1,846,082	+		TX73_008535	0.57	-0.1
1,846,082	+		TX73_008535	0.57	-0.9
1,846,090	-		TX73_008535	0.57	-1.9
1,846,106	+		TX73_008535	0.58	-1.2
1,846,114	-		TX73_008535	0.58	-1.1
1,846,114	-		TX73_008535	0.58	-0.7
1,846,114	-		TX73_008535	0.58	-1.0
1,846,141	+		TX73_008535	0.59	-1.7
1,846,147	+		TX73_008535	0.59	-1.7
1,846,148	-		TX73_008535	0.59	-1.8
1,846,150	-		TX73_008535	0.59	-2.8
1,846,150	-		TX73_008535	0.59	-1.7
1,846,150	-		TX73_008535	0.59	-1.3
1,846,150	-		TX73_008535	0.59	-1.4
1,846,160	+		TX73_008535	0.60	-2.5
1,846,186	-		TX73_008535	0.61	-1.1
1,846,187	-		TX73_008535	0.61	-1.4
1,846,187	-		TX73_008535	0.61	-2.1
1,846,262	-		TX73_008535	0.63	-1.9
1,846,283	+		TX73_008535	0.64	-1.1
1,846,293	+		TX73_008535	0.64	-1.9
1,846,293	+		TX73_008535	0.64	-1.7
1,846,365	+		TX73_008535	0.67	-1.0
1,846,365	+		TX73_008535	0.67	-2.9
1,846,373	-		TX73_008535	0.67	-1.1
1,846,376	+		TX73_008535	0.67	-4.0
1,846,376	+		TX73_008535	0.67	-1.3
1,846,376	+		TX73_008535	0.67	-2.3
1,846,384	-		TX73_008535	0.67	-2.2
1,846,477	+		TX73_008535	0.71	-3.8
1,846,513	+		TX73_008535	0.72	-1.1
1,846,513	+		TX73_008535	0.72	-0.5
1,846,513	+		TX73_008535	0.72	+0.5
1,846,513	+		TX73_008535	0.72	-1.5
1,846,521	-		TX73_008535	0.72	-0.6
1,846,521	-		TX73_008535	0.72	-2.3
1,846,521	-		TX73_008535	0.72	-2.0
1,846,553	+		TX73_008535	0.73	-0.9
1,846,553	+		TX73_008535	0.73	-1.6
1,846,553	+		TX73_008535	0.73	-0.6
1,846,554	+		TX73_008535	0.73	-2.1
1,846,746	+		TX73_008535	0.80	-2.0
1,846,901	+		TX73_008535	0.85	-0.4
1,846,909	-		TX73_008535	0.85	-0.3
1,846,963	+		TX73_008535	0.87	-0.4
1,847,144	+				+0.5
1,847,149	+				-0.8
1,847,149	+				-0.1
1,847,152	-				-0.8
1,847,157	-				-1.3
1,847,225	-				+0.2
1,847,399	-				+0.3
1,847,408	-				+0.9
1,847,457	+		TX73_008540	0.25	-1.0
1,847,473	-		TX73_008540	0.30	-0.7
1,847,473	-		TX73_008540	0.30	-0.0
1,847,505	+		TX73_008540	0.42	-2.2
1,847,505	+		TX73_008540	0.42	-1.4
1,847,515	-		TX73_008540	0.46	-0.1
1,847,622	-		TX73_008540	0.84	-0.0
1,847,686	+				-0.6
1,847,694	-				+0.1
1,847,711	-				-0.2
1,847,734	-				-0.6
1,847,734	-				-0.1
1,847,759	-				-0.2
1,847,768	+		TX73_008545	0.11	+0.3
1,847,877	-		TX73_008545	0.27	-0.6
1,847,913	+		TX73_008545	0.32	-1.2
1,847,913	+		TX73_008545	0.32	-0.7
1,847,921	-		TX73_008545	0.33	-0.0
1,847,942	-		TX73_008545	0.36	-0.2
1,848,000	-		TX73_008545	0.45	+0.3
1,848,056	+		TX73_008545	0.53	+0.3
1,848,056	+		TX73_008545	0.53	-0.5
1,848,056	+		TX73_008545	0.53	-0.3
1,848,089	-		TX73_008545	0.58	-0.3
1,848,099	-		TX73_008545	0.59	-0.1
1,848,197	-		TX73_008545	0.74	-0.2
1,848,204	-		TX73_008545	0.75	-1.0
1,848,209	+		TX73_008545	0.75	-0.7
1,848,217	-		TX73_008545	0.77	-0.6
1,848,217	-		TX73_008545	0.77	-1.4
1,848,238	-		TX73_008545	0.80	-0.3
1,848,284	+		TX73_008545	0.86	+1.0
1,848,302	-		TX73_008545	0.89	-0.3