Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003715 and TX73_003720 overlap by 28 nucleotides TX73_003720 and TX73_003725 are separated by 1 nucleotides TX73_003725 and TX73_003730 are separated by 63 nucleotides
TX73_003715: TX73_003715 - cobyric acid synthase, at 791,278 to 792,762
_003715
TX73_003720: TX73_003720 - adenosylcobinamide-phosphate synthase CbiB, at 792,735 to 793,706
_003720
TX73_003725: TX73_003725 - ABC transporter substrate-binding protein, at 793,708 to 794,520
_003725
TX73_003730: TX73_003730 - threonine-phosphate decarboxylase CobD, at 794,584 to 795,573
_003730
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1
2 at 792.739 kb on - strand at 792.742 kb on + strand at 792.768 kb on + strand at 793.685 kb on - strand at 793.731 kb on - strand at 793.744 kb on + strand at 793.828 kb on + strand, within TX73_003725 at 793.835 kb on + strand, within TX73_003725 at 793.840 kb on + strand, within TX73_003725 at 793.841 kb on - strand, within TX73_003725 at 793.845 kb on + strand, within TX73_003725 at 793.848 kb on - strand, within TX73_003725 at 793.852 kb on + strand, within TX73_003725 at 793.853 kb on - strand, within TX73_003725 at 793.853 kb on - strand, within TX73_003725 at 793.853 kb on - strand, within TX73_003725 at 793.934 kb on - strand, within TX73_003725 at 793.956 kb on + strand, within TX73_003725 at 793.973 kb on + strand, within TX73_003725 at 793.975 kb on - strand, within TX73_003725 at 793.994 kb on - strand, within TX73_003725 at 793.999 kb on - strand, within TX73_003725 at 793.999 kb on - strand, within TX73_003725 at 794.001 kb on - strand, within TX73_003725 at 794.001 kb on - strand, within TX73_003725 at 794.008 kb on + strand, within TX73_003725 at 794.008 kb on + strand, within TX73_003725 at 794.008 kb on + strand, within TX73_003725 at 794.008 kb on + strand, within TX73_003725 at 794.011 kb on - strand, within TX73_003725 at 794.016 kb on - strand, within TX73_003725 at 794.031 kb on - strand, within TX73_003725 at 794.031 kb on - strand, within TX73_003725 at 794.103 kb on - strand, within TX73_003725 at 794.105 kb on + strand, within TX73_003725 at 794.154 kb on - strand, within TX73_003725 at 794.276 kb on - strand, within TX73_003725 at 794.309 kb on + strand, within TX73_003725 at 794.318 kb on - strand, within TX73_003725 at 794.318 kb on - strand, within TX73_003725 at 794.321 kb on + strand, within TX73_003725 at 794.354 kb on - strand, within TX73_003725 at 794.388 kb on + strand, within TX73_003725 at 794.402 kb on - strand, within TX73_003725 at 794.439 kb on - strand at 794.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 792,739 - -0.5 792,742 + -0.8 792,768 + +1.9 793,685 - -0.1 793,731 - +0.7 793,744 + +0.6 793,828 + TX73_003725 0.15 +0.4 793,835 + TX73_003725 0.16 +0.4 793,840 + TX73_003725 0.16 +0.2 793,841 - TX73_003725 0.16 +0.2 793,845 + TX73_003725 0.17 -0.1 793,848 - TX73_003725 0.17 +0.5 793,852 + TX73_003725 0.18 +0.5 793,853 - TX73_003725 0.18 -0.9 793,853 - TX73_003725 0.18 +0.1 793,853 - TX73_003725 0.18 +0.1 793,934 - TX73_003725 0.28 +0.9 793,956 + TX73_003725 0.31 +0.2 793,973 + TX73_003725 0.33 +1.2 793,975 - TX73_003725 0.33 +0.4 793,994 - TX73_003725 0.35 +0.8 793,999 - TX73_003725 0.36 -0.9 793,999 - TX73_003725 0.36 +1.0 794,001 - TX73_003725 0.36 +0.1 794,001 - TX73_003725 0.36 +0.2 794,008 + TX73_003725 0.37 +1.5 794,008 + TX73_003725 0.37 -0.1 794,008 + TX73_003725 0.37 +0.1 794,008 + TX73_003725 0.37 +0.1 794,011 - TX73_003725 0.37 -1.0 794,016 - TX73_003725 0.38 +1.2 794,031 - TX73_003725 0.40 -0.2 794,031 - TX73_003725 0.40 +0.8 794,103 - TX73_003725 0.49 -0.3 794,105 + TX73_003725 0.49 +0.2 794,154 - TX73_003725 0.55 +0.4 794,276 - TX73_003725 0.70 +0.5 794,309 + TX73_003725 0.74 +0.4 794,318 - TX73_003725 0.75 +0.5 794,318 - TX73_003725 0.75 +0.7 794,321 + TX73_003725 0.75 +0.0 794,354 - TX73_003725 0.79 +0.1 794,388 + TX73_003725 0.84 +0.1 794,402 - TX73_003725 0.85 -0.2 794,439 - -0.0 794,447 + +0.2
Or see this region's nucleotide sequence