Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003140 and TX73_003145 are separated by 451 nucleotides TX73_003145 and TX73_003150 are separated by 102 nucleotides
TX73_003140: TX73_003140 - peptide chain release factor N(5)-glutamine methyltransferase, at 675,499 to 676,368
_003140
TX73_003145: TX73_003145 - DUF4167 domain-containing protein, at 676,820 to 677,515
_003145
TX73_003150: TX73_003150 - class I SAM-dependent methyltransferase, at 677,618 to 678,388
_003150
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 676.338 kb on + strand at 676.362 kb on + strand at 676.370 kb on - strand at 676.460 kb on + strand at 676.473 kb on - strand at 676.550 kb on + strand at 676.558 kb on + strand at 676.558 kb on - strand at 676.566 kb on - strand at 676.596 kb on + strand at 676.619 kb on + strand at 676.621 kb on + strand at 676.651 kb on - strand at 676.673 kb on - strand at 676.703 kb on - strand at 676.703 kb on - strand at 676.736 kb on + strand at 676.744 kb on + strand at 676.753 kb on + strand at 676.758 kb on + strand at 676.761 kb on - strand at 676.761 kb on - strand at 676.761 kb on - strand at 676.766 kb on - strand at 676.766 kb on - strand at 676.816 kb on + strand at 676.820 kb on - strand at 677.075 kb on + strand, within TX73_003145 at 677.184 kb on + strand, within TX73_003145 at 677.203 kb on + strand, within TX73_003145 at 677.221 kb on + strand, within TX73_003145 at 677.230 kb on + strand, within TX73_003145 at 677.238 kb on + strand, within TX73_003145 at 677.238 kb on + strand, within TX73_003145 at 677.284 kb on + strand, within TX73_003145 at 677.347 kb on + strand, within TX73_003145 at 677.376 kb on + strand, within TX73_003145 at 677.384 kb on - strand, within TX73_003145 at 677.384 kb on - strand, within TX73_003145 at 677.433 kb on + strand, within TX73_003145 at 677.441 kb on - strand, within TX73_003145 at 677.518 kb on - strand at 677.524 kb on - strand at 677.547 kb on + strand at 677.547 kb on + strand at 677.551 kb on + strand at 677.570 kb on + strand at 677.579 kb on - strand at 677.594 kb on + strand at 677.595 kb on + strand at 677.596 kb on + strand at 677.603 kb on - strand at 677.604 kb on - strand at 677.604 kb on - strand at 677.604 kb on - strand at 677.614 kb on - strand at 677.622 kb on - strand at 677.647 kb on + strand at 677.662 kb on + strand at 677.753 kb on + strand, within TX73_003150 at 677.754 kb on + strand, within TX73_003150 at 677.773 kb on - strand, within TX73_003150 at 677.790 kb on - strand, within TX73_003150 at 677.790 kb on - strand, within TX73_003150 at 677.790 kb on - strand, within TX73_003150 at 677.813 kb on + strand, within TX73_003150 at 677.840 kb on - strand, within TX73_003150 at 677.842 kb on + strand, within TX73_003150 at 677.843 kb on + strand, within TX73_003150 at 677.843 kb on + strand, within TX73_003150 at 677.845 kb on + strand, within TX73_003150 at 677.861 kb on - strand, within TX73_003150 at 677.861 kb on - strand, within TX73_003150 at 677.866 kb on - strand, within TX73_003150 at 677.870 kb on + strand, within TX73_003150 at 677.870 kb on + strand, within TX73_003150 at 677.878 kb on - strand, within TX73_003150 at 677.878 kb on - strand, within TX73_003150 at 677.884 kb on + strand, within TX73_003150 at 677.886 kb on - strand, within TX73_003150 at 677.887 kb on - strand, within TX73_003150 at 677.896 kb on - strand, within TX73_003150 at 677.898 kb on + strand, within TX73_003150 at 677.898 kb on + strand, within TX73_003150 at 677.906 kb on - strand, within TX73_003150 at 677.916 kb on - strand, within TX73_003150 at 677.916 kb on - strand, within TX73_003150 at 677.916 kb on - strand, within TX73_003150 at 677.949 kb on + strand, within TX73_003150 at 677.958 kb on + strand, within TX73_003150 at 677.963 kb on - strand, within TX73_003150 at 677.968 kb on - strand, within TX73_003150 at 677.994 kb on - strand, within TX73_003150 at 677.997 kb on + strand, within TX73_003150 at 677.997 kb on + strand, within TX73_003150 at 678.004 kb on + strand, within TX73_003150 at 678.028 kb on - strand, within TX73_003150 at 678.037 kb on - strand, within TX73_003150 at 678.038 kb on - strand, within TX73_003150 at 678.060 kb on - strand, within TX73_003150 at 678.060 kb on - strand, within TX73_003150 at 678.060 kb on - strand, within TX73_003150 at 678.076 kb on - strand, within TX73_003150 at 678.077 kb on + strand, within TX73_003150 at 678.083 kb on + strand, within TX73_003150 at 678.087 kb on + strand, within TX73_003150 at 678.091 kb on - strand, within TX73_003150 at 678.108 kb on + strand, within TX73_003150 at 678.110 kb on + strand, within TX73_003150 at 678.150 kb on + strand, within TX73_003150 at 678.182 kb on + strand, within TX73_003150 at 678.183 kb on + strand, within TX73_003150 at 678.190 kb on - strand, within TX73_003150 at 678.230 kb on + strand, within TX73_003150 at 678.235 kb on + strand, within TX73_003150 at 678.260 kb on - strand, within TX73_003150 at 678.351 kb on + strand at 678.359 kb on - strand at 678.359 kb on - strand at 678.394 kb on + strand at 678.402 kb on - strand at 678.406 kb on + strand at 678.423 kb on - strand at 678.426 kb on + strand at 678.426 kb on + strand at 678.426 kb on + strand at 678.433 kb on - strand at 678.434 kb on - strand at 678.434 kb on - strand at 678.434 kb on - strand at 678.434 kb on - strand at 678.441 kb on + strand at 678.450 kb on + strand at 678.458 kb on - strand at 678.485 kb on + strand at 678.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 676,338 + -0.5 676,362 + -0.2 676,370 - +0.0 676,460 + +0.2 676,473 - +1.4 676,550 + -0.4 676,558 + +0.7 676,558 - +0.8 676,566 - +1.9 676,596 + +0.3 676,619 + +0.2 676,621 + -0.6 676,651 - +1.4 676,673 - +0.4 676,703 - +1.6 676,703 - +0.6 676,736 + -0.9 676,744 + -1.3 676,753 + -0.3 676,758 + -2.4 676,761 - +1.2 676,761 - +0.4 676,761 - +0.4 676,766 - +1.0 676,766 - +1.4 676,816 + +0.8 676,820 - +1.5 677,075 + TX73_003145 0.37 +4.7 677,184 + TX73_003145 0.52 +1.7 677,203 + TX73_003145 0.55 +3.6 677,221 + TX73_003145 0.58 +4.7 677,230 + TX73_003145 0.59 +3.4 677,238 + TX73_003145 0.60 +1.2 677,238 + TX73_003145 0.60 +1.1 677,284 + TX73_003145 0.67 +4.2 677,347 + TX73_003145 0.76 +3.9 677,376 + TX73_003145 0.80 +0.8 677,384 - TX73_003145 0.81 +1.9 677,384 - TX73_003145 0.81 +1.5 677,433 + TX73_003145 0.88 +1.4 677,441 - TX73_003145 0.89 +5.2 677,518 - +0.3 677,524 - +1.0 677,547 + -0.0 677,547 + -0.2 677,551 + +0.8 677,570 + -0.2 677,579 - +0.7 677,594 + +0.1 677,595 + -0.1 677,596 + -0.4 677,603 - -0.8 677,604 - +0.4 677,604 - +0.3 677,604 - +0.3 677,614 - +0.3 677,622 - -0.5 677,647 + -0.1 677,662 + +0.1 677,753 + TX73_003150 0.18 -1.3 677,754 + TX73_003150 0.18 +0.6 677,773 - TX73_003150 0.20 -0.9 677,790 - TX73_003150 0.22 -0.9 677,790 - TX73_003150 0.22 -2.2 677,790 - TX73_003150 0.22 -0.1 677,813 + TX73_003150 0.25 -2.4 677,840 - TX73_003150 0.29 -0.8 677,842 + TX73_003150 0.29 -0.1 677,843 + TX73_003150 0.29 -1.3 677,843 + TX73_003150 0.29 -0.7 677,845 + TX73_003150 0.29 -0.7 677,861 - TX73_003150 0.32 -0.5 677,861 - TX73_003150 0.32 -1.0 677,866 - TX73_003150 0.32 +0.6 677,870 + TX73_003150 0.33 -1.5 677,870 + TX73_003150 0.33 -1.1 677,878 - TX73_003150 0.34 +0.4 677,878 - TX73_003150 0.34 +1.0 677,884 + TX73_003150 0.35 -2.6 677,886 - TX73_003150 0.35 -1.3 677,887 - TX73_003150 0.35 -0.9 677,896 - TX73_003150 0.36 -1.3 677,898 + TX73_003150 0.36 +0.7 677,898 + TX73_003150 0.36 -2.0 677,906 - TX73_003150 0.37 -2.4 677,916 - TX73_003150 0.39 +0.3 677,916 - TX73_003150 0.39 -1.4 677,916 - TX73_003150 0.39 +0.3 677,949 + TX73_003150 0.43 -1.9 677,958 + TX73_003150 0.44 -1.3 677,963 - TX73_003150 0.45 -0.9 677,968 - TX73_003150 0.45 +0.6 677,994 - TX73_003150 0.49 -0.5 677,997 + TX73_003150 0.49 -1.0 677,997 + TX73_003150 0.49 -1.9 678,004 + TX73_003150 0.50 -0.1 678,028 - TX73_003150 0.53 -1.5 678,037 - TX73_003150 0.54 -1.0 678,038 - TX73_003150 0.54 +0.1 678,060 - TX73_003150 0.57 -0.5 678,060 - TX73_003150 0.57 -1.1 678,060 - TX73_003150 0.57 -0.5 678,076 - TX73_003150 0.59 -0.9 678,077 + TX73_003150 0.60 -2.3 678,083 + TX73_003150 0.60 +0.3 678,087 + TX73_003150 0.61 -1.9 678,091 - TX73_003150 0.61 -1.0 678,108 + TX73_003150 0.64 +1.0 678,110 + TX73_003150 0.64 -1.3 678,150 + TX73_003150 0.69 -0.3 678,182 + TX73_003150 0.73 -0.2 678,183 + TX73_003150 0.73 +0.5 678,190 - TX73_003150 0.74 -0.4 678,230 + TX73_003150 0.79 +1.8 678,235 + TX73_003150 0.80 -0.6 678,260 - TX73_003150 0.83 -0.4 678,351 + +0.2 678,359 - -1.1 678,359 - -1.7 678,394 + +0.7 678,402 - +0.1 678,406 + +2.1 678,423 - +0.7 678,426 + +0.2 678,426 + -0.1 678,426 + -0.5 678,433 - -0.2 678,434 - +0.3 678,434 - +0.0 678,434 - -0.2 678,434 - +0.7 678,441 + -0.5 678,450 + +0.2 678,458 - -0.3 678,485 + -0.4 678,493 - +0.7
Or see this region's nucleotide sequence