Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002345 and TX73_002350 are separated by 136 nucleotides TX73_002350 and TX73_002355 are separated by 145 nucleotides TX73_002355 and TX73_002360 are separated by 245 nucleotides
TX73_002345: TX73_002345 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 497,810 to 498,505
_002345
TX73_002350: TX73_002350 - NifU family protein, at 498,642 to 499,208
_002350
TX73_002355: TX73_002355 - universal stress protein, at 499,354 to 499,848
_002355
TX73_002360: TX73_002360 - tryptophan--tRNA ligase, at 500,094 to 501,146
_002360
Position (kb) 499
500 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 498.514 kb on + strand at 498.537 kb on + strand at 498.555 kb on - strand at 498.558 kb on + strand at 498.566 kb on + strand at 498.566 kb on - strand at 498.568 kb on + strand at 498.576 kb on - strand at 498.581 kb on + strand at 498.586 kb on + strand at 498.586 kb on + strand at 498.594 kb on - strand at 498.639 kb on + strand at 498.668 kb on + strand at 498.693 kb on + strand at 498.693 kb on + strand at 498.701 kb on - strand, within TX73_002350 at 498.701 kb on - strand, within TX73_002350 at 498.755 kb on + strand, within TX73_002350 at 498.776 kb on + strand, within TX73_002350 at 498.776 kb on + strand, within TX73_002350 at 498.776 kb on + strand, within TX73_002350 at 498.776 kb on + strand, within TX73_002350 at 498.777 kb on - strand, within TX73_002350 at 498.781 kb on + strand, within TX73_002350 at 498.784 kb on - strand, within TX73_002350 at 498.784 kb on - strand, within TX73_002350 at 498.789 kb on + strand, within TX73_002350 at 498.801 kb on - strand, within TX73_002350 at 498.830 kb on + strand, within TX73_002350 at 498.830 kb on + strand, within TX73_002350 at 498.838 kb on - strand, within TX73_002350 at 498.845 kb on + strand, within TX73_002350 at 498.883 kb on + strand, within TX73_002350 at 498.883 kb on + strand, within TX73_002350 at 498.891 kb on - strand, within TX73_002350 at 498.891 kb on - strand, within TX73_002350 at 498.891 kb on - strand, within TX73_002350 at 498.906 kb on - strand, within TX73_002350 at 498.913 kb on + strand, within TX73_002350 at 498.915 kb on - strand, within TX73_002350 at 498.935 kb on + strand, within TX73_002350 at 498.935 kb on + strand, within TX73_002350 at 498.954 kb on + strand, within TX73_002350 at 498.960 kb on - strand, within TX73_002350 at 498.978 kb on - strand, within TX73_002350 at 498.985 kb on + strand, within TX73_002350 at 498.993 kb on - strand, within TX73_002350 at 498.993 kb on - strand, within TX73_002350 at 498.993 kb on - strand, within TX73_002350 at 499.006 kb on + strand, within TX73_002350 at 499.006 kb on + strand, within TX73_002350 at 499.010 kb on + strand, within TX73_002350 at 499.014 kb on - strand, within TX73_002350 at 499.014 kb on - strand, within TX73_002350 at 499.014 kb on - strand, within TX73_002350 at 499.039 kb on + strand, within TX73_002350 at 499.041 kb on + strand, within TX73_002350 at 499.047 kb on - strand, within TX73_002350 at 499.049 kb on - strand, within TX73_002350 at 499.049 kb on - strand, within TX73_002350 at 499.074 kb on - strand, within TX73_002350 at 499.082 kb on - strand, within TX73_002350 at 499.084 kb on - strand, within TX73_002350 at 499.097 kb on - strand, within TX73_002350 at 499.121 kb on + strand, within TX73_002350 at 499.129 kb on - strand, within TX73_002350 at 499.145 kb on - strand, within TX73_002350 at 499.153 kb on - strand at 499.164 kb on - strand at 499.172 kb on - strand at 499.178 kb on + strand at 499.186 kb on - strand at 499.203 kb on - strand at 499.206 kb on + strand at 499.230 kb on + strand at 499.230 kb on + strand at 499.230 kb on + strand at 499.238 kb on - strand at 499.238 kb on - strand at 499.247 kb on + strand at 499.298 kb on + strand at 499.298 kb on + strand at 499.306 kb on - strand at 499.306 kb on - strand at 499.308 kb on - strand at 499.357 kb on + strand at 499.365 kb on - strand at 499.386 kb on + strand at 499.386 kb on + strand at 499.386 kb on + strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.420 kb on + strand, within TX73_002355 at 499.427 kb on + strand, within TX73_002355 at 499.437 kb on + strand, within TX73_002355 at 499.445 kb on - strand, within TX73_002355 at 499.445 kb on - strand, within TX73_002355 at 499.455 kb on + strand, within TX73_002355 at 499.463 kb on - strand, within TX73_002355 at 499.494 kb on + strand, within TX73_002355 at 499.512 kb on - strand, within TX73_002355 at 499.533 kb on + strand, within TX73_002355 at 499.543 kb on + strand, within TX73_002355 at 499.544 kb on + strand, within TX73_002355 at 499.551 kb on - strand, within TX73_002355 at 499.551 kb on - strand, within TX73_002355 at 499.566 kb on + strand, within TX73_002355 at 499.597 kb on - strand, within TX73_002355 at 499.597 kb on - strand, within TX73_002355 at 499.615 kb on - strand, within TX73_002355 at 499.704 kb on + strand, within TX73_002355 at 499.708 kb on + strand, within TX73_002355 at 499.712 kb on - strand, within TX73_002355 at 499.716 kb on - strand, within TX73_002355 at 499.716 kb on - strand, within TX73_002355 at 499.729 kb on + strand, within TX73_002355 at 499.739 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.751 kb on + strand, within TX73_002355 at 499.753 kb on + strand, within TX73_002355 at 499.753 kb on + strand, within TX73_002355 at 499.753 kb on + strand, within TX73_002355 at 499.753 kb on + strand, within TX73_002355 at 499.753 kb on + strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.759 kb on - strand, within TX73_002355 at 499.761 kb on - strand, within TX73_002355 at 499.771 kb on - strand, within TX73_002355 at 499.821 kb on + strand at 499.823 kb on + strand at 499.843 kb on + strand at 499.851 kb on - strand at 499.855 kb on + strand at 499.868 kb on - strand at 499.898 kb on + strand at 499.898 kb on + strand at 499.898 kb on + strand at 499.906 kb on - strand at 499.917 kb on + strand at 499.925 kb on - strand at 499.929 kb on + strand at 499.939 kb on - strand at 499.941 kb on + strand at 499.943 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.954 kb on + strand at 499.962 kb on - strand at 499.962 kb on - strand at 499.962 kb on - strand at 499.966 kb on + strand at 499.993 kb on + strand at 499.993 kb on + strand at 500.017 kb on - strand at 500.037 kb on + strand at 500.037 kb on + strand at 500.045 kb on - strand at 500.048 kb on + strand at 500.056 kb on - strand at 500.067 kb on + strand at 500.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 498,514 + -0.1 498,537 + +0.8 498,555 - -0.1 498,558 + -0.5 498,566 + -0.4 498,566 - -0.6 498,568 + -0.5 498,576 - -0.4 498,581 + -0.7 498,586 + -0.8 498,586 + +0.3 498,594 - +0.0 498,639 + -0.3 498,668 + -2.3 498,693 + -3.6 498,693 + -3.2 498,701 - TX73_002350 0.10 -3.8 498,701 - TX73_002350 0.10 -4.2 498,755 + TX73_002350 0.20 -2.0 498,776 + TX73_002350 0.24 -2.5 498,776 + TX73_002350 0.24 -3.3 498,776 + TX73_002350 0.24 -2.5 498,776 + TX73_002350 0.24 -3.4 498,777 - TX73_002350 0.24 -2.6 498,781 + TX73_002350 0.25 -4.3 498,784 - TX73_002350 0.25 -2.4 498,784 - TX73_002350 0.25 -2.6 498,789 + TX73_002350 0.26 -2.7 498,801 - TX73_002350 0.28 -2.9 498,830 + TX73_002350 0.33 -1.0 498,830 + TX73_002350 0.33 -1.5 498,838 - TX73_002350 0.35 -1.8 498,845 + TX73_002350 0.36 -2.7 498,883 + TX73_002350 0.43 -2.2 498,883 + TX73_002350 0.43 -4.1 498,891 - TX73_002350 0.44 -3.8 498,891 - TX73_002350 0.44 -3.9 498,891 - TX73_002350 0.44 -2.3 498,906 - TX73_002350 0.47 -1.3 498,913 + TX73_002350 0.48 -2.9 498,915 - TX73_002350 0.48 -3.2 498,935 + TX73_002350 0.52 -2.4 498,935 + TX73_002350 0.52 -0.4 498,954 + TX73_002350 0.55 -2.9 498,960 - TX73_002350 0.56 -2.4 498,978 - TX73_002350 0.59 -3.9 498,985 + TX73_002350 0.60 -1.1 498,993 - TX73_002350 0.62 -2.9 498,993 - TX73_002350 0.62 -3.4 498,993 - TX73_002350 0.62 -3.0 499,006 + TX73_002350 0.64 -3.6 499,006 + TX73_002350 0.64 -3.1 499,010 + TX73_002350 0.65 -2.7 499,014 - TX73_002350 0.66 -1.7 499,014 - TX73_002350 0.66 -2.7 499,014 - TX73_002350 0.66 -4.1 499,039 + TX73_002350 0.70 -3.1 499,041 + TX73_002350 0.70 -4.0 499,047 - TX73_002350 0.71 -4.3 499,049 - TX73_002350 0.72 -2.9 499,049 - TX73_002350 0.72 -4.4 499,074 - TX73_002350 0.76 -3.3 499,082 - TX73_002350 0.78 -3.0 499,084 - TX73_002350 0.78 -2.9 499,097 - TX73_002350 0.80 +0.3 499,121 + TX73_002350 0.84 -2.9 499,129 - TX73_002350 0.86 -3.6 499,145 - TX73_002350 0.89 -4.2 499,153 - -2.0 499,164 - -1.4 499,172 - -2.8 499,178 + -2.2 499,186 - -2.6 499,203 - -1.5 499,206 + -0.8 499,230 + -0.4 499,230 + -0.5 499,230 + +0.1 499,238 - +0.1 499,238 - +0.2 499,247 + -0.9 499,298 + +0.1 499,298 + +0.1 499,306 - +0.7 499,306 - +0.7 499,308 - -0.5 499,357 + -0.5 499,365 - -0.7 499,386 + -1.3 499,386 + -0.4 499,386 + -0.2 499,394 - -0.6 499,394 - -0.4 499,394 - +0.1 499,394 - -0.3 499,394 - -0.1 499,420 + TX73_002355 0.13 -0.5 499,427 + TX73_002355 0.15 +1.0 499,437 + TX73_002355 0.17 -0.3 499,445 - TX73_002355 0.18 -0.2 499,445 - TX73_002355 0.18 -0.6 499,455 + TX73_002355 0.20 -0.3 499,463 - TX73_002355 0.22 -0.7 499,494 + TX73_002355 0.28 -0.1 499,512 - TX73_002355 0.32 +0.1 499,533 + TX73_002355 0.36 +0.7 499,543 + TX73_002355 0.38 +0.1 499,544 + TX73_002355 0.38 +0.5 499,551 - TX73_002355 0.40 -0.3 499,551 - TX73_002355 0.40 +1.0 499,566 + TX73_002355 0.43 +2.3 499,597 - TX73_002355 0.49 -0.1 499,597 - TX73_002355 0.49 -0.3 499,615 - TX73_002355 0.53 -0.9 499,704 + TX73_002355 0.71 -0.7 499,708 + TX73_002355 0.72 +1.1 499,712 - TX73_002355 0.72 -0.1 499,716 - TX73_002355 0.73 -0.1 499,716 - TX73_002355 0.73 -0.9 499,729 + TX73_002355 0.76 -1.5 499,739 + TX73_002355 0.78 -1.5 499,751 + TX73_002355 0.80 +1.7 499,751 + TX73_002355 0.80 -0.7 499,751 + TX73_002355 0.80 -0.6 499,751 + TX73_002355 0.80 -0.9 499,751 + TX73_002355 0.80 +0.6 499,751 + TX73_002355 0.80 +0.0 499,751 + TX73_002355 0.80 -0.6 499,753 + TX73_002355 0.81 -0.4 499,753 + TX73_002355 0.81 -1.5 499,753 + TX73_002355 0.81 -0.2 499,753 + TX73_002355 0.81 +0.8 499,753 + TX73_002355 0.81 -1.0 499,759 - TX73_002355 0.82 -0.5 499,759 - TX73_002355 0.82 +0.3 499,759 - TX73_002355 0.82 -1.3 499,759 - TX73_002355 0.82 -0.8 499,759 - TX73_002355 0.82 -0.2 499,759 - TX73_002355 0.82 +0.1 499,759 - TX73_002355 0.82 -1.7 499,761 - TX73_002355 0.82 -0.1 499,771 - TX73_002355 0.84 -0.1 499,821 + +0.3 499,823 + -1.8 499,843 + +0.1 499,851 - -0.9 499,855 + +0.2 499,868 - +0.7 499,898 + +0.5 499,898 + -1.0 499,898 + -0.1 499,906 - -0.6 499,917 + +0.2 499,925 - +0.1 499,929 + +0.2 499,939 - -0.1 499,941 + -0.8 499,943 + -0.5 499,954 + +0.3 499,954 + +0.5 499,954 + +0.1 499,954 + -0.6 499,954 + -0.4 499,954 + -0.1 499,954 + -0.5 499,962 - +0.2 499,962 - -0.1 499,962 - +0.3 499,966 + +0.1 499,993 + +0.3 499,993 + +0.2 500,017 - -1.7 500,037 + +0.6 500,037 + +0.0 500,045 - +0.7 500,048 + -0.7 500,056 - -0.4 500,067 + +0.2 500,109 - -0.3
Or see this region's nucleotide sequence