Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002290

Experiment: PM with succinate and Sodium Formate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002285 and TX73_002290 are separated by 123 nucleotidesTX73_002290 and TX73_002295 are separated by 12 nucleotidesTX73_002295 and TX73_002300 are separated by 128 nucleotides TX73_002285: TX73_002285 - DUF2336 domain-containing protein, at 486,600 to 487,685 _002285 TX73_002290: TX73_002290 - phytanoyl-CoA dioxygenase family protein, at 487,809 to 488,657 _002290 TX73_002295: TX73_002295 - tRNA (guanine(46)-N(7))-methyltransferase TrmB, at 488,670 to 489,413 _002295 TX73_002300: TX73_002300 - helix-turn-helix domain-containing protein, at 489,542 to 489,961 _002300 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2 3at 486.870 kb on + strand, within TX73_002285at 486.870 kb on + strand, within TX73_002285at 486.884 kb on - strand, within TX73_002285at 486.891 kb on + strand, within TX73_002285at 486.907 kb on - strand, within TX73_002285at 486.909 kb on - strand, within TX73_002285at 486.918 kb on + strand, within TX73_002285at 486.945 kb on - strand, within TX73_002285at 486.946 kb on - strand, within TX73_002285at 486.951 kb on + strand, within TX73_002285at 486.981 kb on - strand, within TX73_002285at 486.983 kb on + strand, within TX73_002285at 486.986 kb on + strand, within TX73_002285at 486.989 kb on - strand, within TX73_002285at 486.991 kb on + strand, within TX73_002285at 486.991 kb on - strand, within TX73_002285at 486.994 kb on - strand, within TX73_002285at 487.019 kb on + strand, within TX73_002285at 487.033 kb on - strand, within TX73_002285at 487.038 kb on + strand, within TX73_002285at 487.058 kb on + strand, within TX73_002285at 487.064 kb on - strand, within TX73_002285at 487.113 kb on + strand, within TX73_002285at 487.116 kb on - strand, within TX73_002285at 487.118 kb on + strand, within TX73_002285at 487.118 kb on + strand, within TX73_002285at 487.121 kb on - strand, within TX73_002285at 487.121 kb on - strand, within TX73_002285at 487.126 kb on - strand, within TX73_002285at 487.128 kb on - strand, within TX73_002285at 487.131 kb on - strand, within TX73_002285at 487.133 kb on - strand, within TX73_002285at 487.133 kb on - strand, within TX73_002285at 487.156 kb on + strand, within TX73_002285at 487.159 kb on - strand, within TX73_002285at 487.187 kb on - strand, within TX73_002285at 487.190 kb on + strand, within TX73_002285at 487.190 kb on - strand, within TX73_002285at 487.198 kb on - strand, within TX73_002285at 487.200 kb on + strand, within TX73_002285at 487.220 kb on + strand, within TX73_002285at 487.228 kb on - strand, within TX73_002285at 487.247 kb on + strand, within TX73_002285at 487.297 kb on + strand, within TX73_002285at 487.305 kb on - strand, within TX73_002285at 487.310 kb on - strand, within TX73_002285at 487.328 kb on + strand, within TX73_002285at 487.335 kb on + strand, within TX73_002285at 487.336 kb on - strand, within TX73_002285at 487.336 kb on - strand, within TX73_002285at 487.338 kb on - strand, within TX73_002285at 487.341 kb on - strand, within TX73_002285at 487.346 kb on + strand, within TX73_002285at 487.349 kb on + strand, within TX73_002285at 487.354 kb on + strand, within TX73_002285at 487.354 kb on + strand, within TX73_002285at 487.406 kb on - strand, within TX73_002285at 487.406 kb on - strand, within TX73_002285at 487.450 kb on + strand, within TX73_002285at 487.460 kb on + strand, within TX73_002285at 487.466 kb on + strand, within TX73_002285at 487.497 kb on - strand, within TX73_002285at 487.497 kb on - strand, within TX73_002285at 487.497 kb on - strand, within TX73_002285at 487.499 kb on + strand, within TX73_002285at 487.502 kb on - strand, within TX73_002285at 487.502 kb on - strand, within TX73_002285at 487.502 kb on - strand, within TX73_002285at 487.520 kb on - strand, within TX73_002285at 487.533 kb on + strand, within TX73_002285at 487.533 kb on + strand, within TX73_002285at 487.544 kb on - strand, within TX73_002285at 487.581 kb on - strandat 487.588 kb on - strandat 487.607 kb on + strandat 487.621 kb on + strandat 487.631 kb on + strandat 487.631 kb on + strandat 487.639 kb on - strandat 487.639 kb on - strandat 487.646 kb on - strandat 487.679 kb on + strandat 487.679 kb on + strandat 487.679 kb on + strandat 487.679 kb on + strandat 487.679 kb on + strandat 487.687 kb on - strandat 487.687 kb on - strandat 487.698 kb on + strandat 487.725 kb on + strandat 487.768 kb on + strandat 487.768 kb on + strandat 487.859 kb on + strandat 487.868 kb on - strandat 487.869 kb on - strandat 487.905 kb on + strand, within TX73_002290at 487.910 kb on + strand, within TX73_002290at 487.928 kb on + strand, within TX73_002290at 487.928 kb on + strand, within TX73_002290at 487.963 kb on - strand, within TX73_002290at 487.975 kb on + strand, within TX73_002290at 488.021 kb on + strand, within TX73_002290at 488.021 kb on + strand, within TX73_002290at 488.037 kb on + strand, within TX73_002290at 488.114 kb on + strand, within TX73_002290at 488.278 kb on - strand, within TX73_002290at 488.308 kb on - strand, within TX73_002290at 488.368 kb on + strand, within TX73_002290at 488.374 kb on + strand, within TX73_002290at 488.381 kb on - strand, within TX73_002290at 488.408 kb on + strand, within TX73_002290at 488.456 kb on + strand, within TX73_002290at 488.606 kb on + strandat 488.668 kb on + strandat 488.668 kb on + strandat 488.668 kb on + strandat 488.676 kb on - strandat 488.676 kb on - strandat 488.676 kb on - strandat 488.791 kb on - strand, within TX73_002295at 488.792 kb on + strand, within TX73_002295at 488.813 kb on + strand, within TX73_002295at 488.826 kb on + strand, within TX73_002295at 488.826 kb on + strand, within TX73_002295at 488.834 kb on - strand, within TX73_002295at 488.844 kb on - strand, within TX73_002295at 488.844 kb on - strand, within TX73_002295at 488.844 kb on - strand, within TX73_002295at 488.844 kb on - strand, within TX73_002295at 488.879 kb on + strand, within TX73_002295at 488.918 kb on - strand, within TX73_002295at 488.921 kb on - strand, within TX73_002295at 488.931 kb on - strand, within TX73_002295at 488.962 kb on + strand, within TX73_002295at 488.962 kb on + strand, within TX73_002295at 488.974 kb on - strand, within TX73_002295at 488.984 kb on + strand, within TX73_002295at 488.984 kb on + strand, within TX73_002295at 488.994 kb on + strand, within TX73_002295at 488.999 kb on + strand, within TX73_002295at 489.001 kb on + strand, within TX73_002295at 489.009 kb on + strand, within TX73_002295at 489.009 kb on - strand, within TX73_002295at 489.014 kb on + strand, within TX73_002295at 489.039 kb on - strand, within TX73_002295at 489.079 kb on + strand, within TX73_002295at 489.096 kb on + strand, within TX73_002295at 489.112 kb on - strand, within TX73_002295at 489.135 kb on + strand, within TX73_002295at 489.158 kb on - strand, within TX73_002295at 489.163 kb on - strand, within TX73_002295at 489.197 kb on + strand, within TX73_002295at 489.197 kb on - strand, within TX73_002295at 489.205 kb on + strand, within TX73_002295at 489.227 kb on + strand, within TX73_002295at 489.288 kb on + strand, within TX73_002295at 489.296 kb on - strand, within TX73_002295at 489.313 kb on + strand, within TX73_002295at 489.343 kb on - strandat 489.343 kb on - strandat 489.356 kb on - strandat 489.358 kb on + strandat 489.373 kb on + strandat 489.381 kb on - strandat 489.432 kb on + strandat 489.432 kb on + strandat 489.440 kb on - strandat 489.440 kb on - strandat 489.446 kb on + strandat 489.451 kb on + strandat 489.451 kb on + strandat 489.459 kb on - strandat 489.459 kb on - strandat 489.631 kb on + strand, within TX73_002300at 489.643 kb on + strand, within TX73_002300at 489.643 kb on + strand, within TX73_002300

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark
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486,870 + TX73_002285 0.25 -0.1
486,870 + TX73_002285 0.25 -0.3
486,884 - TX73_002285 0.26 -0.6
486,891 + TX73_002285 0.27 -0.3
486,907 - TX73_002285 0.28 -0.0
486,909 - TX73_002285 0.28 +0.2
486,918 + TX73_002285 0.29 -0.6
486,945 - TX73_002285 0.32 -0.0
486,946 - TX73_002285 0.32 -0.4
486,951 + TX73_002285 0.32 +0.4
486,981 - TX73_002285 0.35 -0.4
486,983 + TX73_002285 0.35 -1.0
486,986 + TX73_002285 0.36 -0.1
486,989 - TX73_002285 0.36 +0.2
486,991 + TX73_002285 0.36 -0.3
486,991 - TX73_002285 0.36 -0.2
486,994 - TX73_002285 0.36 +0.1
487,019 + TX73_002285 0.39 +0.2
487,033 - TX73_002285 0.40 -1.6
487,038 + TX73_002285 0.40 +0.9
487,058 + TX73_002285 0.42 +0.3
487,064 - TX73_002285 0.43 -0.5
487,113 + TX73_002285 0.47 -0.7
487,116 - TX73_002285 0.48 +0.0
487,118 + TX73_002285 0.48 +0.1
487,118 + TX73_002285 0.48 +0.0
487,121 - TX73_002285 0.48 +0.0
487,121 - TX73_002285 0.48 -0.1
487,126 - TX73_002285 0.48 +0.5
487,128 - TX73_002285 0.49 +0.6
487,131 - TX73_002285 0.49 -0.2
487,133 - TX73_002285 0.49 -0.3
487,133 - TX73_002285 0.49 -0.6
487,156 + TX73_002285 0.51 -0.5
487,159 - TX73_002285 0.51 +0.1
487,187 - TX73_002285 0.54 -0.3
487,190 + TX73_002285 0.54 +1.2
487,190 - TX73_002285 0.54 -0.4
487,198 - TX73_002285 0.55 -1.7
487,200 + TX73_002285 0.55 +0.8
487,220 + TX73_002285 0.57 -1.1
487,228 - TX73_002285 0.58 -0.2
487,247 + TX73_002285 0.60 -0.3
487,297 + TX73_002285 0.64 +1.0
487,305 - TX73_002285 0.65 +0.8
487,310 - TX73_002285 0.65 -0.0
487,328 + TX73_002285 0.67 -0.6
487,335 + TX73_002285 0.68 +0.8
487,336 - TX73_002285 0.68 +0.4
487,336 - TX73_002285 0.68 +0.5
487,338 - TX73_002285 0.68 -1.1
487,341 - TX73_002285 0.68 +0.0
487,346 + TX73_002285 0.69 +0.1
487,349 + TX73_002285 0.69 +1.0
487,354 + TX73_002285 0.69 -0.7
487,354 + TX73_002285 0.69 -0.6
487,406 - TX73_002285 0.74 +0.8
487,406 - TX73_002285 0.74 -0.5
487,450 + TX73_002285 0.78 -0.1
487,460 + TX73_002285 0.79 -0.2
487,466 + TX73_002285 0.80 +0.2
487,497 - TX73_002285 0.83 +0.3
487,497 - TX73_002285 0.83 +0.3
487,497 - TX73_002285 0.83 -0.5
487,499 + TX73_002285 0.83 +0.1
487,502 - TX73_002285 0.83 -1.9
487,502 - TX73_002285 0.83 -0.6
487,502 - TX73_002285 0.83 +0.9
487,520 - TX73_002285 0.85 +2.0
487,533 + TX73_002285 0.86 -0.2
487,533 + TX73_002285 0.86 +0.6
487,544 - TX73_002285 0.87 -0.3
487,581 - -0.5
487,588 - +1.3
487,607 + +0.1
487,621 + -0.5
487,631 + +0.5
487,631 + +0.8
487,639 - +0.3
487,639 - -0.4
487,646 - +0.2
487,679 + -0.3
487,679 + +0.3
487,679 + -0.1
487,679 + +0.5
487,679 + -0.9
487,687 - +0.8
487,687 - +0.6
487,698 + +0.6
487,725 + +0.1
487,768 + -0.1
487,768 + -0.3
487,859 + -0.2
487,868 - -0.3
487,869 - +0.4
487,905 + TX73_002290 0.11 +0.3
487,910 + TX73_002290 0.12 -0.3
487,928 + TX73_002290 0.14 -0.1
487,928 + TX73_002290 0.14 +0.6
487,963 - TX73_002290 0.18 -0.3
487,975 + TX73_002290 0.20 +0.6
488,021 + TX73_002290 0.25 +0.5
488,021 + TX73_002290 0.25 -0.7
488,037 + TX73_002290 0.27 -0.2
488,114 + TX73_002290 0.36 -0.1
488,278 - TX73_002290 0.55 -1.1
488,308 - TX73_002290 0.59 -0.4
488,368 + TX73_002290 0.66 +0.3
488,374 + TX73_002290 0.67 -0.2
488,381 - TX73_002290 0.67 -0.5
488,408 + TX73_002290 0.71 -0.4
488,456 + TX73_002290 0.76 -0.2
488,606 + -0.0
488,668 + -1.4
488,668 + +1.6
488,668 + -0.2
488,676 - -0.5
488,676 - -0.9
488,676 - +1.5
488,791 - TX73_002295 0.16 +0.2
488,792 + TX73_002295 0.16 +1.1
488,813 + TX73_002295 0.19 +0.4
488,826 + TX73_002295 0.21 -0.7
488,826 + TX73_002295 0.21 +1.0
488,834 - TX73_002295 0.22 -0.8
488,844 - TX73_002295 0.23 -1.1
488,844 - TX73_002295 0.23 +0.2
488,844 - TX73_002295 0.23 +0.1
488,844 - TX73_002295 0.23 +1.5
488,879 + TX73_002295 0.28 +1.0
488,918 - TX73_002295 0.33 -0.0
488,921 - TX73_002295 0.34 -0.1
488,931 - TX73_002295 0.35 +0.5
488,962 + TX73_002295 0.39 +0.5
488,962 + TX73_002295 0.39 +0.1
488,974 - TX73_002295 0.41 -0.1
488,984 + TX73_002295 0.42 +0.4
488,984 + TX73_002295 0.42 +0.5
488,994 + TX73_002295 0.44 +0.9
488,999 + TX73_002295 0.44 -0.3
489,001 + TX73_002295 0.44 +0.0
489,009 + TX73_002295 0.46 +0.5
489,009 - TX73_002295 0.46 -0.2
489,014 + TX73_002295 0.46 -0.7
489,039 - TX73_002295 0.50 -1.3
489,079 + TX73_002295 0.55 -0.0
489,096 + TX73_002295 0.57 -0.4
489,112 - TX73_002295 0.59 +0.2
489,135 + TX73_002295 0.62 +0.7
489,158 - TX73_002295 0.66 +0.2
489,163 - TX73_002295 0.66 -0.0
489,197 + TX73_002295 0.71 -1.0
489,197 - TX73_002295 0.71 +0.8
489,205 + TX73_002295 0.72 -1.8
489,227 + TX73_002295 0.75 -1.0
489,288 + TX73_002295 0.83 +0.5
489,296 - TX73_002295 0.84 +0.3
489,313 + TX73_002295 0.86 -0.4
489,343 - -0.3
489,343 - -1.8
489,356 - -1.6
489,358 + +0.0
489,373 + +0.5
489,381 - -0.1
489,432 + -0.2
489,432 + +0.1
489,440 - -0.2
489,440 - +0.7
489,446 + +0.7
489,451 + +0.3
489,451 + -0.2
489,459 - +0.1
489,459 - +0.2
489,631 + TX73_002300 0.21 +3.3
489,643 + TX73_002300 0.24 +0.3
489,643 + TX73_002300 0.24 -0.6

Or see this region's nucleotide sequence