Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002125

Experiment: PM with succinate and Sodium Formate aerobic in dark

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002120 and TX73_002125 are separated by 109 nucleotidesTX73_002125 and TX73_002130 are separated by 175 nucleotidesTX73_002130 and TX73_002135 are separated by 76 nucleotides TX73_002120: TX73_002120 - translational GTPase TypA, at 450,315 to 452,138 _002120 TX73_002125: TX73_002125 - NAD(P)/FAD-dependent oxidoreductase, at 452,248 to 453,516 _002125 TX73_002130: TX73_002130 - GNAT family N-acetyltransferase, at 453,692 to 454,201 _002130 TX73_002135: TX73_002135 - inorganic diphosphatase, at 454,278 to 454,814 _002135 Position (kb) 452 453 454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 451.256 kb on - strand, within TX73_002120at 451.273 kb on - strand, within TX73_002120at 451.296 kb on + strand, within TX73_002120at 451.321 kb on + strand, within TX73_002120at 451.331 kb on + strand, within TX73_002120at 451.336 kb on + strand, within TX73_002120at 451.362 kb on + strand, within TX73_002120at 451.383 kb on + strand, within TX73_002120at 451.440 kb on + strand, within TX73_002120at 451.453 kb on + strand, within TX73_002120at 451.473 kb on + strand, within TX73_002120at 451.502 kb on + strand, within TX73_002120at 451.502 kb on + strand, within TX73_002120at 451.519 kb on - strand, within TX73_002120at 451.529 kb on - strand, within TX73_002120at 451.529 kb on - strand, within TX73_002120at 451.701 kb on + strand, within TX73_002120at 451.702 kb on - strand, within TX73_002120at 451.749 kb on + strand, within TX73_002120at 451.756 kb on - strand, within TX73_002120at 451.770 kb on + strand, within TX73_002120at 451.780 kb on + strand, within TX73_002120at 451.790 kb on + strand, within TX73_002120at 451.842 kb on - strand, within TX73_002120at 451.843 kb on + strand, within TX73_002120at 451.862 kb on + strand, within TX73_002120at 451.871 kb on - strand, within TX73_002120at 451.879 kb on - strand, within TX73_002120at 451.972 kb on - strandat 451.984 kb on - strandat 452.041 kb on - strandat 452.051 kb on - strandat 452.061 kb on - strandat 452.078 kb on + strandat 452.089 kb on + strandat 452.140 kb on - strandat 452.145 kb on + strandat 452.153 kb on - strandat 452.167 kb on + strandat 452.195 kb on + strandat 452.242 kb on - strandat 452.259 kb on - strandat 452.302 kb on - strandat 452.309 kb on + strandat 452.322 kb on + strandat 452.328 kb on - strandat 452.336 kb on + strandat 452.342 kb on + strandat 452.346 kb on + strandat 452.346 kb on + strandat 452.349 kb on - strandat 452.354 kb on - strandat 452.455 kb on + strand, within TX73_002125at 452.463 kb on - strand, within TX73_002125at 452.477 kb on + strand, within TX73_002125at 452.487 kb on + strand, within TX73_002125at 452.500 kb on - strand, within TX73_002125at 452.505 kb on - strand, within TX73_002125at 452.510 kb on - strand, within TX73_002125at 452.543 kb on - strand, within TX73_002125at 452.569 kb on + strand, within TX73_002125at 452.577 kb on - strand, within TX73_002125at 452.603 kb on - strand, within TX73_002125at 452.604 kb on + strand, within TX73_002125at 452.604 kb on + strand, within TX73_002125at 452.609 kb on + strand, within TX73_002125at 452.612 kb on - strand, within TX73_002125at 452.612 kb on - strand, within TX73_002125at 452.612 kb on - strand, within TX73_002125at 452.612 kb on - strand, within TX73_002125at 452.612 kb on - strand, within TX73_002125at 452.652 kb on + strand, within TX73_002125at 452.698 kb on + strand, within TX73_002125at 452.700 kb on - strand, within TX73_002125at 452.711 kb on + strand, within TX73_002125at 452.742 kb on - strand, within TX73_002125at 452.771 kb on + strand, within TX73_002125at 452.771 kb on + strand, within TX73_002125at 452.796 kb on - strand, within TX73_002125at 452.796 kb on - strand, within TX73_002125at 452.796 kb on - strand, within TX73_002125at 452.833 kb on + strand, within TX73_002125at 452.833 kb on + strand, within TX73_002125at 452.833 kb on + strand, within TX73_002125at 452.841 kb on - strand, within TX73_002125at 452.841 kb on - strand, within TX73_002125at 452.841 kb on - strand, within TX73_002125at 452.841 kb on - strand, within TX73_002125at 452.843 kb on - strand, within TX73_002125at 452.846 kb on - strand, within TX73_002125at 452.851 kb on - strand, within TX73_002125at 452.877 kb on + strand, within TX73_002125at 452.891 kb on - strand, within TX73_002125at 452.922 kb on - strand, within TX73_002125at 452.927 kb on + strand, within TX73_002125at 452.932 kb on + strand, within TX73_002125at 452.936 kb on + strand, within TX73_002125at 452.971 kb on + strand, within TX73_002125at 452.991 kb on + strand, within TX73_002125at 452.999 kb on - strand, within TX73_002125at 453.038 kb on + strand, within TX73_002125at 453.046 kb on - strand, within TX73_002125at 453.081 kb on + strand, within TX73_002125at 453.116 kb on + strand, within TX73_002125at 453.116 kb on + strand, within TX73_002125at 453.116 kb on + strand, within TX73_002125at 453.124 kb on - strand, within TX73_002125at 453.124 kb on - strand, within TX73_002125at 453.145 kb on - strand, within TX73_002125at 453.182 kb on + strand, within TX73_002125at 453.182 kb on + strand, within TX73_002125at 453.190 kb on - strand, within TX73_002125at 453.190 kb on - strand, within TX73_002125at 453.231 kb on - strand, within TX73_002125at 453.268 kb on - strand, within TX73_002125at 453.293 kb on + strand, within TX73_002125at 453.326 kb on + strand, within TX73_002125at 453.349 kb on - strand, within TX73_002125at 453.415 kb on + strandat 453.418 kb on - strandat 453.423 kb on + strandat 453.423 kb on + strandat 453.458 kb on + strandat 453.458 kb on + strandat 453.510 kb on + strandat 453.525 kb on - strandat 453.546 kb on + strandat 453.549 kb on - strandat 453.555 kb on + strandat 453.588 kb on + strandat 453.598 kb on + strandat 453.598 kb on + strandat 453.598 kb on + strandat 453.598 kb on + strandat 453.598 kb on + strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.606 kb on - strandat 453.654 kb on + strandat 453.672 kb on + strandat 453.677 kb on + strandat 453.677 kb on + strandat 453.682 kb on + strandat 453.685 kb on - strandat 453.696 kb on + strandat 453.701 kb on + strandat 453.704 kb on - strandat 453.706 kb on + strandat 453.711 kb on + strandat 453.718 kb on + strandat 453.721 kb on + strandat 453.739 kb on + strandat 453.739 kb on - strandat 453.745 kb on + strand, within TX73_002130at 453.755 kb on + strand, within TX73_002130at 453.764 kb on - strand, within TX73_002130at 453.785 kb on - strand, within TX73_002130at 453.789 kb on + strand, within TX73_002130at 453.790 kb on - strand, within TX73_002130at 453.859 kb on + strand, within TX73_002130at 453.894 kb on - strand, within TX73_002130at 453.901 kb on - strand, within TX73_002130at 453.902 kb on + strand, within TX73_002130at 453.914 kb on + strand, within TX73_002130at 453.914 kb on + strand, within TX73_002130at 453.919 kb on + strand, within TX73_002130at 453.957 kb on - strand, within TX73_002130at 453.957 kb on - strand, within TX73_002130at 453.969 kb on + strand, within TX73_002130at 453.970 kb on + strand, within TX73_002130at 453.971 kb on + strand, within TX73_002130at 453.971 kb on + strand, within TX73_002130at 453.977 kb on - strand, within TX73_002130at 453.979 kb on - strand, within TX73_002130at 453.991 kb on + strand, within TX73_002130at 454.038 kb on + strand, within TX73_002130at 454.038 kb on + strand, within TX73_002130at 454.051 kb on - strand, within TX73_002130at 454.051 kb on - strand, within TX73_002130at 454.052 kb on + strand, within TX73_002130at 454.060 kb on + strand, within TX73_002130at 454.060 kb on - strand, within TX73_002130at 454.060 kb on - strand, within TX73_002130at 454.060 kb on - strand, within TX73_002130at 454.061 kb on - strand, within TX73_002130at 454.069 kb on + strand, within TX73_002130at 454.069 kb on + strand, within TX73_002130at 454.070 kb on - strand, within TX73_002130at 454.077 kb on - strand, within TX73_002130at 454.077 kb on - strand, within TX73_002130at 454.081 kb on + strand, within TX73_002130at 454.087 kb on - strand, within TX73_002130at 454.105 kb on + strand, within TX73_002130at 454.143 kb on + strand, within TX73_002130at 454.143 kb on + strand, within TX73_002130at 454.145 kb on + strand, within TX73_002130at 454.148 kb on + strand, within TX73_002130at 454.161 kb on - strandat 454.166 kb on - strandat 454.166 kb on - strandat 454.181 kb on + strandat 454.235 kb on + strandat 454.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark
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451,256 - TX73_002120 0.52 -0.2
451,273 - TX73_002120 0.53 +0.0
451,296 + TX73_002120 0.54 -0.8
451,321 + TX73_002120 0.55 +0.6
451,331 + TX73_002120 0.56 +2.3
451,336 + TX73_002120 0.56 -0.1
451,362 + TX73_002120 0.57 -0.5
451,383 + TX73_002120 0.59 +1.2
451,440 + TX73_002120 0.62 -0.3
451,453 + TX73_002120 0.62 -1.3
451,473 + TX73_002120 0.63 -1.8
451,502 + TX73_002120 0.65 -0.5
451,502 + TX73_002120 0.65 -0.4
451,519 - TX73_002120 0.66 -0.7
451,529 - TX73_002120 0.67 +0.5
451,529 - TX73_002120 0.67 -0.4
451,701 + TX73_002120 0.76 -0.7
451,702 - TX73_002120 0.76 +0.3
451,749 + TX73_002120 0.79 +1.8
451,756 - TX73_002120 0.79 -1.4
451,770 + TX73_002120 0.80 -0.2
451,780 + TX73_002120 0.80 -0.6
451,790 + TX73_002120 0.81 +0.8
451,842 - TX73_002120 0.84 -0.3
451,843 + TX73_002120 0.84 +0.4
451,862 + TX73_002120 0.85 -0.1
451,871 - TX73_002120 0.85 -0.4
451,879 - TX73_002120 0.86 +0.8
451,972 - -0.2
451,984 - -0.5
452,041 - +0.6
452,051 - +0.3
452,061 - -0.7
452,078 + -0.7
452,089 + -0.7
452,140 - +0.4
452,145 + -0.0
452,153 - -0.7
452,167 + +0.8
452,195 + +0.7
452,242 - -1.7
452,259 - +0.7
452,302 - -1.0
452,309 + -0.2
452,322 + +0.2
452,328 - +0.4
452,336 + +0.1
452,342 + -0.1
452,346 + -0.6
452,346 + -0.7
452,349 - +0.1
452,354 - +0.7
452,455 + TX73_002125 0.16 +0.9
452,463 - TX73_002125 0.17 -0.3
452,477 + TX73_002125 0.18 +0.0
452,487 + TX73_002125 0.19 -0.1
452,500 - TX73_002125 0.20 -0.1
452,505 - TX73_002125 0.20 +0.1
452,510 - TX73_002125 0.21 +0.5
452,543 - TX73_002125 0.23 -0.2
452,569 + TX73_002125 0.25 +0.5
452,577 - TX73_002125 0.26 +0.3
452,603 - TX73_002125 0.28 -0.6
452,604 + TX73_002125 0.28 -0.2
452,604 + TX73_002125 0.28 +1.3
452,609 + TX73_002125 0.28 -0.2
452,612 - TX73_002125 0.29 +0.3
452,612 - TX73_002125 0.29 -0.3
452,612 - TX73_002125 0.29 -1.0
452,612 - TX73_002125 0.29 +0.2
452,612 - TX73_002125 0.29 +0.6
452,652 + TX73_002125 0.32 -0.8
452,698 + TX73_002125 0.35 -0.4
452,700 - TX73_002125 0.36 -0.7
452,711 + TX73_002125 0.36 -0.5
452,742 - TX73_002125 0.39 -0.3
452,771 + TX73_002125 0.41 -0.6
452,771 + TX73_002125 0.41 +0.3
452,796 - TX73_002125 0.43 -0.7
452,796 - TX73_002125 0.43 -0.2
452,796 - TX73_002125 0.43 -0.1
452,833 + TX73_002125 0.46 +0.4
452,833 + TX73_002125 0.46 +0.2
452,833 + TX73_002125 0.46 +0.2
452,841 - TX73_002125 0.47 -0.2
452,841 - TX73_002125 0.47 -0.0
452,841 - TX73_002125 0.47 -0.4
452,841 - TX73_002125 0.47 -0.7
452,843 - TX73_002125 0.47 -0.0
452,846 - TX73_002125 0.47 -0.8
452,851 - TX73_002125 0.48 -0.8
452,877 + TX73_002125 0.50 -0.4
452,891 - TX73_002125 0.51 -0.2
452,922 - TX73_002125 0.53 -0.6
452,927 + TX73_002125 0.54 +1.3
452,932 + TX73_002125 0.54 +1.2
452,936 + TX73_002125 0.54 -0.5
452,971 + TX73_002125 0.57 -0.3
452,991 + TX73_002125 0.59 -0.5
452,999 - TX73_002125 0.59 -0.2
453,038 + TX73_002125 0.62 +0.1
453,046 - TX73_002125 0.63 +1.3
453,081 + TX73_002125 0.66 -0.4
453,116 + TX73_002125 0.68 -0.6
453,116 + TX73_002125 0.68 +0.3
453,116 + TX73_002125 0.68 -0.6
453,124 - TX73_002125 0.69 -0.5
453,124 - TX73_002125 0.69 -0.4
453,145 - TX73_002125 0.71 +0.8
453,182 + TX73_002125 0.74 -0.2
453,182 + TX73_002125 0.74 +0.4
453,190 - TX73_002125 0.74 +0.1
453,190 - TX73_002125 0.74 -0.5
453,231 - TX73_002125 0.77 +0.9
453,268 - TX73_002125 0.80 +0.1
453,293 + TX73_002125 0.82 +0.0
453,326 + TX73_002125 0.85 -0.5
453,349 - TX73_002125 0.87 -0.6
453,415 + -1.0
453,418 - +0.1
453,423 + -0.7
453,423 + +0.1
453,458 + +0.5
453,458 + -0.6
453,510 + +0.3
453,525 - +0.6
453,546 + +0.6
453,549 - -0.2
453,555 + +0.4
453,588 + +1.6
453,598 + -0.6
453,598 + +0.4
453,598 + +1.2
453,598 + +0.6
453,598 + +1.2
453,606 - +0.7
453,606 - +0.0
453,606 - +1.2
453,606 - +0.4
453,606 - +0.1
453,606 - +0.9
453,606 - +0.3
453,654 + +1.1
453,672 + +1.5
453,677 + +1.5
453,677 + +0.4
453,682 + +1.7
453,685 - +2.0
453,696 + +1.8
453,701 + +1.0
453,704 - +2.2
453,706 + +2.8
453,711 + +2.2
453,718 + +1.3
453,721 + +2.1
453,739 + +2.2
453,739 - +2.2
453,745 + TX73_002130 0.10 +1.7
453,755 + TX73_002130 0.12 +2.0
453,764 - TX73_002130 0.14 +1.6
453,785 - TX73_002130 0.18 +2.6
453,789 + TX73_002130 0.19 +2.9
453,790 - TX73_002130 0.19 +3.7
453,859 + TX73_002130 0.33 +2.6
453,894 - TX73_002130 0.40 +2.6
453,901 - TX73_002130 0.41 +1.8
453,902 + TX73_002130 0.41 +1.5
453,914 + TX73_002130 0.44 +2.4
453,914 + TX73_002130 0.44 +2.7
453,919 + TX73_002130 0.45 +2.8
453,957 - TX73_002130 0.52 +2.8
453,957 - TX73_002130 0.52 +2.8
453,969 + TX73_002130 0.54 +3.2
453,970 + TX73_002130 0.55 +3.0
453,971 + TX73_002130 0.55 +1.4
453,971 + TX73_002130 0.55 +2.1
453,977 - TX73_002130 0.56 +2.4
453,979 - TX73_002130 0.56 +3.0
453,991 + TX73_002130 0.59 +1.8
454,038 + TX73_002130 0.68 +3.2
454,038 + TX73_002130 0.68 +2.3
454,051 - TX73_002130 0.70 +2.8
454,051 - TX73_002130 0.70 +2.0
454,052 + TX73_002130 0.71 +2.1
454,060 + TX73_002130 0.72 +2.1
454,060 - TX73_002130 0.72 +3.6
454,060 - TX73_002130 0.72 +2.3
454,060 - TX73_002130 0.72 +2.1
454,061 - TX73_002130 0.72 +2.5
454,069 + TX73_002130 0.74 +2.5
454,069 + TX73_002130 0.74 +2.6
454,070 - TX73_002130 0.74 +3.3
454,077 - TX73_002130 0.75 +3.1
454,077 - TX73_002130 0.75 +2.4
454,081 + TX73_002130 0.76 +3.2
454,087 - TX73_002130 0.77 +2.8
454,105 + TX73_002130 0.81 +2.9
454,143 + TX73_002130 0.88 +2.3
454,143 + TX73_002130 0.88 +2.5
454,145 + TX73_002130 0.89 +3.2
454,148 + TX73_002130 0.89 +3.1
454,161 - +2.3
454,166 - +2.0
454,166 - +2.0
454,181 + +1.6
454,235 + -0.6
454,272 + +1.2

Or see this region's nucleotide sequence