Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000875 and TX73_000880 overlap by 4 nucleotides TX73_000880 and TX73_000885 are separated by 150 nucleotides
TX73_000875: TX73_000875 - peptidoglycan DD-metalloendopeptidase family protein, at 186,427 to 187,818
_000875
TX73_000880: TX73_000880 - S41 family peptidase, at 187,815 to 189,191
_000880
TX73_000885: TX73_000885 - divergent polysaccharide deacetylase family protein, at 189,342 to 190,580
_000885
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -1
0
1
2
3 at 187.789 kb on + strand at 187.800 kb on - strand at 187.807 kb on - strand at 189.074 kb on - strand at 189.087 kb on + strand at 189.097 kb on + strand at 189.097 kb on + strand at 189.097 kb on + strand at 189.105 kb on - strand at 189.166 kb on - strand at 189.188 kb on + strand at 189.199 kb on + strand at 189.244 kb on + strand at 189.244 kb on + strand at 189.262 kb on - strand at 189.267 kb on - strand at 189.268 kb on - strand at 189.287 kb on + strand at 189.287 kb on + strand at 189.287 kb on + strand at 189.295 kb on - strand at 189.307 kb on - strand at 189.429 kb on + strand at 189.432 kb on - strand at 189.432 kb on - strand at 189.442 kb on + strand at 189.448 kb on + strand at 189.471 kb on + strand, within TX73_000885 at 189.479 kb on - strand, within TX73_000885 at 189.486 kb on - strand, within TX73_000885 at 189.486 kb on - strand, within TX73_000885 at 189.488 kb on + strand, within TX73_000885 at 189.488 kb on + strand, within TX73_000885 at 189.493 kb on + strand, within TX73_000885 at 189.508 kb on + strand, within TX73_000885 at 189.533 kb on + strand, within TX73_000885 at 189.533 kb on + strand, within TX73_000885 at 189.533 kb on + strand, within TX73_000885 at 189.535 kb on - strand, within TX73_000885 at 189.541 kb on - strand, within TX73_000885 at 189.544 kb on + strand, within TX73_000885 at 189.544 kb on + strand, within TX73_000885 at 189.552 kb on - strand, within TX73_000885 at 189.584 kb on + strand, within TX73_000885 at 189.585 kb on + strand, within TX73_000885 at 189.593 kb on - strand, within TX73_000885 at 189.600 kb on + strand, within TX73_000885 at 189.600 kb on + strand, within TX73_000885 at 189.600 kb on + strand, within TX73_000885 at 189.608 kb on - strand, within TX73_000885 at 189.608 kb on - strand, within TX73_000885 at 189.635 kb on - strand, within TX73_000885 at 189.642 kb on + strand, within TX73_000885 at 189.650 kb on - strand, within TX73_000885 at 189.664 kb on + strand, within TX73_000885 at 189.691 kb on + strand, within TX73_000885 at 189.691 kb on + strand, within TX73_000885 at 189.699 kb on - strand, within TX73_000885 at 189.699 kb on - strand, within TX73_000885 at 189.699 kb on - strand, within TX73_000885 at 189.702 kb on - strand, within TX73_000885 at 189.705 kb on + strand, within TX73_000885 at 189.719 kb on + strand, within TX73_000885 at 189.741 kb on - strand, within TX73_000885 at 189.741 kb on - strand, within TX73_000885 at 189.741 kb on - strand, within TX73_000885 at 189.744 kb on + strand, within TX73_000885 at 189.758 kb on - strand, within TX73_000885 at 189.769 kb on + strand, within TX73_000885 at 189.777 kb on - strand, within TX73_000885 at 189.778 kb on + strand, within TX73_000885 at 189.819 kb on + strand, within TX73_000885 at 189.846 kb on - strand, within TX73_000885 at 189.846 kb on - strand, within TX73_000885 at 189.846 kb on - strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.884 kb on + strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.892 kb on - strand, within TX73_000885 at 189.899 kb on + strand, within TX73_000885 at 189.907 kb on - strand, within TX73_000885 at 189.918 kb on - strand, within TX73_000885 at 189.952 kb on + strand, within TX73_000885 at 189.960 kb on - strand, within TX73_000885 at 189.987 kb on + strand, within TX73_000885 at 190.009 kb on + strand, within TX73_000885 at 190.009 kb on + strand, within TX73_000885 at 190.014 kb on + strand, within TX73_000885 at 190.017 kb on - strand, within TX73_000885 at 190.022 kb on - strand, within TX73_000885 at 190.030 kb on + strand, within TX73_000885 at 190.040 kb on - strand, within TX73_000885 at 190.043 kb on + strand, within TX73_000885 at 190.051 kb on + strand, within TX73_000885 at 190.060 kb on - strand, within TX73_000885 at 190.078 kb on - strand, within TX73_000885 at 190.080 kb on - strand, within TX73_000885 at 190.105 kb on + strand, within TX73_000885 at 190.113 kb on - strand, within TX73_000885 at 190.121 kb on - strand, within TX73_000885 at 190.122 kb on + strand, within TX73_000885 at 190.130 kb on - strand, within TX73_000885 at 190.130 kb on - strand, within TX73_000885 at 190.130 kb on - strand, within TX73_000885 at 190.137 kb on - strand, within TX73_000885 at 190.137 kb on - strand, within TX73_000885 at 190.177 kb on + strand, within TX73_000885 at 190.182 kb on + strand, within TX73_000885 at 190.187 kb on + strand, within TX73_000885 at 190.189 kb on - strand, within TX73_000885 at 190.190 kb on - strand, within TX73_000885 at 190.190 kb on - strand, within TX73_000885
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 187,789 + +1.8 187,800 - +1.5 187,807 - +1.0 189,074 - +0.7 189,087 + +1.7 189,097 + -0.1 189,097 + -0.6 189,097 + +0.3 189,105 - +1.5 189,166 - -0.0 189,188 + +0.6 189,199 + +0.7 189,244 + -0.3 189,244 + -0.2 189,262 - -0.2 189,267 - -0.5 189,268 - -0.3 189,287 + +0.2 189,287 + -0.3 189,287 + -0.2 189,295 - +0.7 189,307 - +0.8 189,429 + +0.4 189,432 - +2.8 189,432 - +3.0 189,442 + +3.1 189,448 + +2.7 189,471 + TX73_000885 0.10 +2.8 189,479 - TX73_000885 0.11 +2.8 189,486 - TX73_000885 0.12 +3.3 189,486 - TX73_000885 0.12 +2.9 189,488 + TX73_000885 0.12 +2.9 189,488 + TX73_000885 0.12 +3.1 189,493 + TX73_000885 0.12 +3.4 189,508 + TX73_000885 0.13 +3.0 189,533 + TX73_000885 0.15 +2.9 189,533 + TX73_000885 0.15 +3.0 189,533 + TX73_000885 0.15 +3.1 189,535 - TX73_000885 0.16 +3.0 189,541 - TX73_000885 0.16 +3.0 189,544 + TX73_000885 0.16 +2.9 189,544 + TX73_000885 0.16 +3.3 189,552 - TX73_000885 0.17 +3.3 189,584 + TX73_000885 0.20 +3.1 189,585 + TX73_000885 0.20 +3.0 189,593 - TX73_000885 0.20 +3.4 189,600 + TX73_000885 0.21 +2.9 189,600 + TX73_000885 0.21 +3.0 189,600 + TX73_000885 0.21 +3.0 189,608 - TX73_000885 0.21 +3.1 189,608 - TX73_000885 0.21 +2.8 189,635 - TX73_000885 0.24 +3.1 189,642 + TX73_000885 0.24 +3.2 189,650 - TX73_000885 0.25 +2.8 189,664 + TX73_000885 0.26 +2.9 189,691 + TX73_000885 0.28 +3.2 189,691 + TX73_000885 0.28 +3.3 189,699 - TX73_000885 0.29 +2.9 189,699 - TX73_000885 0.29 +2.9 189,699 - TX73_000885 0.29 +2.9 189,702 - TX73_000885 0.29 +3.2 189,705 + TX73_000885 0.29 +3.4 189,719 + TX73_000885 0.30 +3.2 189,741 - TX73_000885 0.32 +3.3 189,741 - TX73_000885 0.32 +3.1 189,741 - TX73_000885 0.32 +3.0 189,744 + TX73_000885 0.32 +3.2 189,758 - TX73_000885 0.34 +2.9 189,769 + TX73_000885 0.34 +2.7 189,777 - TX73_000885 0.35 +3.2 189,778 + TX73_000885 0.35 +3.1 189,819 + TX73_000885 0.38 +2.9 189,846 - TX73_000885 0.41 +2.9 189,846 - TX73_000885 0.41 +2.8 189,846 - TX73_000885 0.41 +3.0 189,884 + TX73_000885 0.44 +3.0 189,884 + TX73_000885 0.44 +2.8 189,884 + TX73_000885 0.44 +3.0 189,884 + TX73_000885 0.44 +2.9 189,884 + TX73_000885 0.44 +2.9 189,884 + TX73_000885 0.44 +2.8 189,884 + TX73_000885 0.44 +2.8 189,884 + TX73_000885 0.44 +2.9 189,892 - TX73_000885 0.44 +2.3 189,892 - TX73_000885 0.44 +3.0 189,892 - TX73_000885 0.44 +3.2 189,892 - TX73_000885 0.44 +3.1 189,892 - TX73_000885 0.44 +2.9 189,892 - TX73_000885 0.44 +2.6 189,892 - TX73_000885 0.44 +3.2 189,892 - TX73_000885 0.44 +3.3 189,892 - TX73_000885 0.44 +2.9 189,892 - TX73_000885 0.44 +3.0 189,892 - TX73_000885 0.44 +2.8 189,892 - TX73_000885 0.44 +3.1 189,892 - TX73_000885 0.44 +3.1 189,892 - TX73_000885 0.44 +2.5 189,899 + TX73_000885 0.45 +3.3 189,907 - TX73_000885 0.46 +3.3 189,918 - TX73_000885 0.46 +3.0 189,952 + TX73_000885 0.49 +3.3 189,960 - TX73_000885 0.50 +3.1 189,987 + TX73_000885 0.52 +3.2 190,009 + TX73_000885 0.54 +2.9 190,009 + TX73_000885 0.54 +2.8 190,014 + TX73_000885 0.54 +3.2 190,017 - TX73_000885 0.54 +2.9 190,022 - TX73_000885 0.55 +3.1 190,030 + TX73_000885 0.56 +3.1 190,040 - TX73_000885 0.56 +3.1 190,043 + TX73_000885 0.57 +2.7 190,051 + TX73_000885 0.57 +2.8 190,060 - TX73_000885 0.58 +2.6 190,078 - TX73_000885 0.59 +3.2 190,080 - TX73_000885 0.60 +3.4 190,105 + TX73_000885 0.62 +3.3 190,113 - TX73_000885 0.62 +3.0 190,121 - TX73_000885 0.63 +3.1 190,122 + TX73_000885 0.63 +3.3 190,130 - TX73_000885 0.64 +2.7 190,130 - TX73_000885 0.64 +3.1 190,130 - TX73_000885 0.64 +3.2 190,137 - TX73_000885 0.64 +2.8 190,137 - TX73_000885 0.64 +3.0 190,177 + TX73_000885 0.67 +3.1 190,182 + TX73_000885 0.68 +3.2 190,187 + TX73_000885 0.68 +3.1 190,189 - TX73_000885 0.68 +2.9 190,190 - TX73_000885 0.68 +3.2 190,190 - TX73_000885 0.68 +3.5
Or see this region's nucleotide sequence