Experiment: PM with succinate and Sodium Formate aerobic in dark
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000155 and TX73_000160 are separated by 152 nucleotides TX73_000160 and TX73_000165 are separated by 85 nucleotides TX73_000165 and TX73_000170 are separated by 3 nucleotides
TX73_000155: TX73_000155 - transcription antitermination factor NusB, at 35,820 to 37,172
_000155
TX73_000160: TX73_000160 - DUF1674 domain-containing protein, at 37,325 to 37,543
_000160
TX73_000165: TX73_000165 - thermonuclease family protein, at 37,629 to 38,204
_000165
TX73_000170: TX73_000170 - YiiX/YebB-like N1pC/P60 family cysteine hydrolase, at 38,208 to 39,092
_000170
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 36.638 kb on + strand, within TX73_000155 at 36.656 kb on - strand, within TX73_000155 at 36.665 kb on - strand, within TX73_000155 at 36.665 kb on - strand, within TX73_000155 at 36.727 kb on - strand, within TX73_000155 at 36.729 kb on - strand, within TX73_000155 at 36.742 kb on - strand, within TX73_000155 at 36.745 kb on - strand, within TX73_000155 at 36.751 kb on + strand, within TX73_000155 at 36.761 kb on - strand, within TX73_000155 at 36.764 kb on - strand, within TX73_000155 at 36.766 kb on + strand, within TX73_000155 at 36.771 kb on + strand, within TX73_000155 at 36.773 kb on - strand, within TX73_000155 at 36.774 kb on - strand, within TX73_000155 at 36.774 kb on - strand, within TX73_000155 at 36.774 kb on - strand, within TX73_000155 at 36.779 kb on - strand, within TX73_000155 at 36.805 kb on + strand, within TX73_000155 at 36.845 kb on - strand, within TX73_000155 at 36.859 kb on - strand, within TX73_000155 at 36.864 kb on + strand, within TX73_000155 at 36.872 kb on - strand, within TX73_000155 at 36.882 kb on - strand, within TX73_000155 at 36.882 kb on - strand, within TX73_000155 at 36.885 kb on - strand, within TX73_000155 at 36.887 kb on - strand, within TX73_000155 at 36.892 kb on + strand, within TX73_000155 at 36.900 kb on - strand, within TX73_000155 at 36.900 kb on - strand, within TX73_000155 at 36.900 kb on - strand, within TX73_000155 at 36.900 kb on - strand, within TX73_000155 at 36.900 kb on - strand, within TX73_000155 at 36.920 kb on - strand, within TX73_000155 at 36.920 kb on - strand, within TX73_000155 at 36.920 kb on - strand, within TX73_000155 at 36.928 kb on - strand, within TX73_000155 at 36.951 kb on + strand, within TX73_000155 at 37.012 kb on + strand, within TX73_000155 at 37.014 kb on + strand, within TX73_000155 at 37.024 kb on + strand, within TX73_000155 at 37.026 kb on + strand, within TX73_000155 at 37.026 kb on + strand, within TX73_000155 at 37.034 kb on - strand, within TX73_000155 at 37.059 kb on - strand at 37.083 kb on + strand at 37.095 kb on + strand at 37.095 kb on + strand at 37.095 kb on + strand at 37.101 kb on - strand at 37.103 kb on - strand at 37.103 kb on - strand at 37.104 kb on + strand at 37.119 kb on + strand at 37.119 kb on - strand at 37.124 kb on + strand at 37.126 kb on + strand at 37.131 kb on + strand at 37.139 kb on + strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.176 kb on - strand at 37.176 kb on - strand at 37.182 kb on - strand at 37.182 kb on - strand at 37.194 kb on - strand at 37.196 kb on - strand at 37.197 kb on - strand at 37.199 kb on - strand at 37.205 kb on - strand at 37.222 kb on - strand at 37.224 kb on + strand at 37.229 kb on + strand at 37.232 kb on - strand at 37.232 kb on - strand at 37.237 kb on - strand at 37.283 kb on + strand at 37.283 kb on + strand at 37.283 kb on + strand at 37.283 kb on + strand at 37.283 kb on + strand at 37.291 kb on - strand at 37.352 kb on + strand, within TX73_000160 at 37.415 kb on + strand, within TX73_000160 at 37.459 kb on + strand, within TX73_000160 at 37.484 kb on - strand, within TX73_000160 at 37.484 kb on - strand, within TX73_000160 at 37.484 kb on - strand, within TX73_000160 at 37.484 kb on - strand, within TX73_000160 at 37.485 kb on + strand, within TX73_000160 at 37.485 kb on + strand, within TX73_000160 at 37.485 kb on + strand, within TX73_000160 at 37.485 kb on + strand, within TX73_000160 at 37.485 kb on + strand, within TX73_000160 at 37.485 kb on - strand, within TX73_000160 at 37.493 kb on - strand, within TX73_000160 at 37.493 kb on - strand, within TX73_000160 at 37.493 kb on - strand, within TX73_000160 at 37.517 kb on + strand, within TX73_000160 at 37.517 kb on + strand, within TX73_000160 at 37.538 kb on + strand at 37.551 kb on - strand at 37.564 kb on - strand at 37.626 kb on + strand at 37.627 kb on + strand at 37.634 kb on - strand at 37.668 kb on - strand at 37.681 kb on - strand at 37.682 kb on - strand at 37.693 kb on + strand, within TX73_000165 at 37.693 kb on + strand, within TX73_000165 at 37.695 kb on + strand, within TX73_000165 at 37.701 kb on - strand, within TX73_000165 at 37.707 kb on + strand, within TX73_000165 at 37.722 kb on - strand, within TX73_000165 at 37.763 kb on + strand, within TX73_000165 at 37.787 kb on + strand, within TX73_000165 at 37.797 kb on + strand, within TX73_000165 at 37.797 kb on + strand, within TX73_000165 at 37.815 kb on + strand, within TX73_000165 at 37.823 kb on - strand, within TX73_000165 at 37.823 kb on - strand, within TX73_000165 at 37.828 kb on + strand, within TX73_000165 at 37.860 kb on - strand, within TX73_000165 at 37.862 kb on + strand, within TX73_000165 at 37.862 kb on + strand, within TX73_000165 at 37.862 kb on + strand, within TX73_000165 at 37.865 kb on + strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.870 kb on - strand, within TX73_000165 at 37.885 kb on + strand, within TX73_000165 at 37.893 kb on - strand, within TX73_000165 at 37.903 kb on + strand, within TX73_000165 at 37.912 kb on - strand, within TX73_000165 at 37.914 kb on + strand, within TX73_000165 at 37.915 kb on + strand, within TX73_000165 at 37.923 kb on - strand, within TX73_000165 at 37.923 kb on - strand, within TX73_000165 at 37.923 kb on - strand, within TX73_000165 at 37.956 kb on - strand, within TX73_000165 at 38.008 kb on + strand, within TX73_000165 at 38.062 kb on - strand, within TX73_000165 at 38.062 kb on - strand, within TX73_000165 at 38.076 kb on + strand, within TX73_000165 at 38.076 kb on + strand, within TX73_000165 at 38.084 kb on - strand, within TX73_000165 at 38.089 kb on - strand, within TX73_000165 at 38.144 kb on - strand, within TX73_000165 at 38.146 kb on - strand, within TX73_000165 at 38.167 kb on + strand at 38.178 kb on + strand at 38.188 kb on + strand at 38.205 kb on + strand at 38.205 kb on + strand at 38.206 kb on + strand at 38.212 kb on - strand at 38.213 kb on - strand at 38.232 kb on - strand at 38.259 kb on + strand at 38.259 kb on + strand at 38.267 kb on - strand at 38.267 kb on - strand at 38.267 kb on - strand at 38.267 kb on - strand at 38.288 kb on + strand at 38.301 kb on - strand, within TX73_000170 at 38.340 kb on - strand, within TX73_000170 at 38.359 kb on + strand, within TX73_000170 at 38.359 kb on + strand, within TX73_000170 at 38.359 kb on + strand, within TX73_000170 at 38.364 kb on + strand, within TX73_000170 at 38.364 kb on + strand, within TX73_000170 at 38.367 kb on - strand, within TX73_000170 at 38.367 kb on - strand, within TX73_000170 at 38.372 kb on - strand, within TX73_000170 at 38.372 kb on - strand, within TX73_000170 at 38.374 kb on + strand, within TX73_000170 at 38.386 kb on - strand, within TX73_000170 at 38.401 kb on + strand, within TX73_000170 at 38.448 kb on + strand, within TX73_000170 at 38.448 kb on + strand, within TX73_000170 at 38.448 kb on + strand, within TX73_000170 at 38.469 kb on + strand, within TX73_000170 at 38.477 kb on - strand, within TX73_000170 at 38.504 kb on - strand, within TX73_000170 at 38.504 kb on - strand, within TX73_000170 at 38.522 kb on + strand, within TX73_000170 at 38.522 kb on + strand, within TX73_000170 at 38.527 kb on + strand, within TX73_000170 at 38.532 kb on - strand, within TX73_000170 at 38.535 kb on - strand, within TX73_000170 at 38.569 kb on - strand, within TX73_000170 at 38.579 kb on - strand, within TX73_000170 at 38.642 kb on + strand, within TX73_000170 at 38.642 kb on + strand, within TX73_000170 at 38.650 kb on - strand, within TX73_000170 at 38.650 kb on - strand, within TX73_000170 at 38.712 kb on + strand, within TX73_000170 at 38.712 kb on + strand, within TX73_000170 at 38.722 kb on + strand, within TX73_000170 at 38.732 kb on + strand, within TX73_000170 at 38.732 kb on + strand, within TX73_000170 at 38.740 kb on - strand, within TX73_000170 at 38.740 kb on - strand, within TX73_000170 at 38.740 kb on - strand, within TX73_000170 at 38.740 kb on - strand, within TX73_000170 at 38.740 kb on - strand, within TX73_000170 at 38.742 kb on - strand, within TX73_000170 at 38.742 kb on - strand, within TX73_000170 at 38.742 kb on - strand, within TX73_000170 at 38.742 kb on - strand, within TX73_000170 at 38.790 kb on - strand, within TX73_000170 at 38.824 kb on + strand, within TX73_000170 at 38.828 kb on + strand, within TX73_000170 at 38.832 kb on - strand, within TX73_000170 at 38.832 kb on - strand, within TX73_000170 at 38.848 kb on + strand, within TX73_000170 at 38.856 kb on + strand, within TX73_000170 at 38.858 kb on + strand, within TX73_000170 at 38.862 kb on - strand, within TX73_000170 at 38.863 kb on - strand, within TX73_000170 at 38.874 kb on - strand, within TX73_000170 at 38.886 kb on - strand, within TX73_000170 at 38.886 kb on - strand, within TX73_000170 at 38.888 kb on - strand, within TX73_000170 at 38.888 kb on - strand, within TX73_000170 at 38.902 kb on - strand, within TX73_000170 at 38.904 kb on + strand, within TX73_000170 at 38.946 kb on - strand, within TX73_000170 at 38.958 kb on - strand, within TX73_000170 at 38.978 kb on + strand, within TX73_000170 at 38.978 kb on + strand, within TX73_000170 at 38.982 kb on - strand, within TX73_000170 at 38.996 kb on + strand, within TX73_000170 at 39.004 kb on - strand at 39.009 kb on - strand at 39.018 kb on - strand at 39.019 kb on - strand at 39.019 kb on - strand at 39.019 kb on - strand at 39.019 kb on - strand at 39.025 kb on + strand at 39.088 kb on - strand at 39.122 kb on - strand at 39.195 kb on + strand at 39.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate aerobic in dark remove 36,638 + TX73_000155 0.60 -0.6 36,656 - TX73_000155 0.62 -0.1 36,665 - TX73_000155 0.62 +1.4 36,665 - TX73_000155 0.62 -0.6 36,727 - TX73_000155 0.67 +0.4 36,729 - TX73_000155 0.67 +0.4 36,742 - TX73_000155 0.68 -0.9 36,745 - TX73_000155 0.68 +0.2 36,751 + TX73_000155 0.69 -0.4 36,761 - TX73_000155 0.70 -0.8 36,764 - TX73_000155 0.70 -0.6 36,766 + TX73_000155 0.70 -0.0 36,771 + TX73_000155 0.70 -0.1 36,773 - TX73_000155 0.70 -1.1 36,774 - TX73_000155 0.71 -0.3 36,774 - TX73_000155 0.71 +0.6 36,774 - TX73_000155 0.71 +1.4 36,779 - TX73_000155 0.71 -0.3 36,805 + TX73_000155 0.73 -1.1 36,845 - TX73_000155 0.76 -0.3 36,859 - TX73_000155 0.77 +0.3 36,864 + TX73_000155 0.77 +0.5 36,872 - TX73_000155 0.78 +0.2 36,882 - TX73_000155 0.78 +0.1 36,882 - TX73_000155 0.78 +0.3 36,885 - TX73_000155 0.79 +0.0 36,887 - TX73_000155 0.79 +0.8 36,892 + TX73_000155 0.79 -0.5 36,900 - TX73_000155 0.80 -0.1 36,900 - TX73_000155 0.80 +0.5 36,900 - TX73_000155 0.80 +0.2 36,900 - TX73_000155 0.80 +0.2 36,900 - TX73_000155 0.80 +0.1 36,920 - TX73_000155 0.81 -0.6 36,920 - TX73_000155 0.81 +1.0 36,920 - TX73_000155 0.81 -1.2 36,928 - TX73_000155 0.82 -0.5 36,951 + TX73_000155 0.84 +0.1 37,012 + TX73_000155 0.88 -0.5 37,014 + TX73_000155 0.88 +0.3 37,024 + TX73_000155 0.89 +0.0 37,026 + TX73_000155 0.89 -0.6 37,026 + TX73_000155 0.89 +1.0 37,034 - TX73_000155 0.90 -0.4 37,059 - +0.7 37,083 + +0.2 37,095 + -0.1 37,095 + +0.5 37,095 + +0.6 37,101 - +1.2 37,103 - -1.1 37,103 - +1.2 37,104 + -0.7 37,119 + -0.3 37,119 - +0.6 37,124 + -1.3 37,126 + +0.1 37,131 + +0.2 37,139 + +0.5 37,147 - +0.3 37,147 - +0.6 37,174 + -0.4 37,174 + -0.0 37,176 - +0.5 37,176 - +0.8 37,182 - +0.1 37,182 - +0.5 37,194 - +0.3 37,196 - -0.3 37,197 - +0.5 37,199 - +0.0 37,205 - -0.1 37,222 - -0.7 37,224 + -0.4 37,229 + +0.3 37,232 - +0.7 37,232 - +1.0 37,237 - +0.5 37,283 + -0.9 37,283 + -0.0 37,283 + -0.2 37,283 + +0.3 37,283 + +0.3 37,291 - +0.1 37,352 + TX73_000160 0.12 +0.1 37,415 + TX73_000160 0.41 +0.1 37,459 + TX73_000160 0.61 +0.0 37,484 - TX73_000160 0.73 -1.2 37,484 - TX73_000160 0.73 -0.5 37,484 - TX73_000160 0.73 -1.2 37,484 - TX73_000160 0.73 -0.8 37,485 + TX73_000160 0.73 -0.3 37,485 + TX73_000160 0.73 -0.8 37,485 + TX73_000160 0.73 +0.0 37,485 + TX73_000160 0.73 -1.5 37,485 + TX73_000160 0.73 -0.7 37,485 - TX73_000160 0.73 -0.4 37,493 - TX73_000160 0.77 -0.8 37,493 - TX73_000160 0.77 -0.4 37,493 - TX73_000160 0.77 -1.4 37,517 + TX73_000160 0.88 -0.6 37,517 + TX73_000160 0.88 +0.1 37,538 + -0.5 37,551 - +0.1 37,564 - -0.2 37,626 + +0.2 37,627 + +0.6 37,634 - -0.0 37,668 - +0.1 37,681 - -0.2 37,682 - -1.2 37,693 + TX73_000165 0.11 +0.3 37,693 + TX73_000165 0.11 +0.2 37,695 + TX73_000165 0.11 +0.2 37,701 - TX73_000165 0.12 +0.1 37,707 + TX73_000165 0.14 +0.1 37,722 - TX73_000165 0.16 +0.0 37,763 + TX73_000165 0.23 -1.1 37,787 + TX73_000165 0.27 -0.4 37,797 + TX73_000165 0.29 +0.5 37,797 + TX73_000165 0.29 -1.0 37,815 + TX73_000165 0.32 -0.2 37,823 - TX73_000165 0.34 -2.1 37,823 - TX73_000165 0.34 +0.5 37,828 + TX73_000165 0.35 -0.8 37,860 - TX73_000165 0.40 +0.7 37,862 + TX73_000165 0.40 -0.2 37,862 + TX73_000165 0.40 -0.3 37,862 + TX73_000165 0.40 +0.1 37,865 + TX73_000165 0.41 -0.2 37,870 - TX73_000165 0.42 -0.2 37,870 - TX73_000165 0.42 +0.2 37,870 - TX73_000165 0.42 -0.1 37,870 - TX73_000165 0.42 +0.2 37,870 - TX73_000165 0.42 -0.3 37,870 - TX73_000165 0.42 +0.7 37,885 + TX73_000165 0.44 +0.2 37,893 - TX73_000165 0.46 -1.3 37,903 + TX73_000165 0.48 +0.7 37,912 - TX73_000165 0.49 -0.7 37,914 + TX73_000165 0.49 +0.5 37,915 + TX73_000165 0.50 -0.5 37,923 - TX73_000165 0.51 +0.0 37,923 - TX73_000165 0.51 +1.1 37,923 - TX73_000165 0.51 +0.3 37,956 - TX73_000165 0.57 -1.0 38,008 + TX73_000165 0.66 +0.1 38,062 - TX73_000165 0.75 -0.2 38,062 - TX73_000165 0.75 +0.6 38,076 + TX73_000165 0.78 +0.3 38,076 + TX73_000165 0.78 +0.7 38,084 - TX73_000165 0.79 +0.2 38,089 - TX73_000165 0.80 -0.1 38,144 - TX73_000165 0.89 +0.4 38,146 - TX73_000165 0.90 -0.2 38,167 + +0.7 38,178 + +0.4 38,188 + +0.2 38,205 + +0.1 38,205 + +0.9 38,206 + -0.3 38,212 - -0.3 38,213 - +0.4 38,232 - -1.3 38,259 + +0.1 38,259 + -0.8 38,267 - -0.1 38,267 - -0.4 38,267 - +0.6 38,267 - -0.0 38,288 + +0.3 38,301 - TX73_000170 0.11 -0.5 38,340 - TX73_000170 0.15 +0.2 38,359 + TX73_000170 0.17 +0.3 38,359 + TX73_000170 0.17 +0.8 38,359 + TX73_000170 0.17 +0.5 38,364 + TX73_000170 0.18 -0.4 38,364 + TX73_000170 0.18 +0.5 38,367 - TX73_000170 0.18 -0.0 38,367 - TX73_000170 0.18 -1.0 38,372 - TX73_000170 0.19 +0.3 38,372 - TX73_000170 0.19 +0.7 38,374 + TX73_000170 0.19 +0.3 38,386 - TX73_000170 0.20 -0.6 38,401 + TX73_000170 0.22 +0.3 38,448 + TX73_000170 0.27 -0.5 38,448 + TX73_000170 0.27 +0.1 38,448 + TX73_000170 0.27 +0.1 38,469 + TX73_000170 0.29 -0.4 38,477 - TX73_000170 0.30 +0.4 38,504 - TX73_000170 0.33 +0.1 38,504 - TX73_000170 0.33 +0.3 38,522 + TX73_000170 0.35 -0.2 38,522 + TX73_000170 0.35 +0.4 38,527 + TX73_000170 0.36 +0.5 38,532 - TX73_000170 0.37 -0.1 38,535 - TX73_000170 0.37 +0.4 38,569 - TX73_000170 0.41 +0.2 38,579 - TX73_000170 0.42 -0.6 38,642 + TX73_000170 0.49 -0.2 38,642 + TX73_000170 0.49 +0.1 38,650 - TX73_000170 0.50 +0.7 38,650 - TX73_000170 0.50 -1.3 38,712 + TX73_000170 0.57 +0.0 38,712 + TX73_000170 0.57 +0.2 38,722 + TX73_000170 0.58 -0.1 38,732 + TX73_000170 0.59 +0.2 38,732 + TX73_000170 0.59 +1.7 38,740 - TX73_000170 0.60 +0.2 38,740 - TX73_000170 0.60 -0.8 38,740 - TX73_000170 0.60 +0.5 38,740 - TX73_000170 0.60 -1.4 38,740 - TX73_000170 0.60 -0.4 38,742 - TX73_000170 0.60 +0.1 38,742 - TX73_000170 0.60 -0.8 38,742 - TX73_000170 0.60 -0.3 38,742 - TX73_000170 0.60 +0.0 38,790 - TX73_000170 0.66 +0.2 38,824 + TX73_000170 0.70 -0.9 38,828 + TX73_000170 0.70 +0.9 38,832 - TX73_000170 0.71 +0.2 38,832 - TX73_000170 0.71 -0.9 38,848 + TX73_000170 0.72 -0.4 38,856 + TX73_000170 0.73 +0.4 38,858 + TX73_000170 0.73 +0.4 38,862 - TX73_000170 0.74 +0.3 38,863 - TX73_000170 0.74 +0.1 38,874 - TX73_000170 0.75 +0.4 38,886 - TX73_000170 0.77 -0.6 38,886 - TX73_000170 0.77 +0.2 38,888 - TX73_000170 0.77 +0.5 38,888 - TX73_000170 0.77 +0.5 38,902 - TX73_000170 0.78 -0.1 38,904 + TX73_000170 0.79 +0.6 38,946 - TX73_000170 0.83 +0.2 38,958 - TX73_000170 0.85 +0.7 38,978 + TX73_000170 0.87 +1.3 38,978 + TX73_000170 0.87 +0.3 38,982 - TX73_000170 0.87 -0.6 38,996 + TX73_000170 0.89 +0.4 39,004 - +0.3 39,009 - +0.2 39,018 - +0.0 39,019 - -0.5 39,019 - +0.3 39,019 - +0.1 39,019 - +0.3 39,025 + +0.9 39,088 - +0.7 39,122 - -0.8 39,195 + -0.5 39,203 - +0.5
Or see this region's nucleotide sequence