Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015895

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_015890 and TX73_015895 are separated by 96 nucleotidesTX73_015895 and TX73_015900 are separated by 304 nucleotides TX73_015890: TX73_015890 - beta-ketoacyl-ACP synthase II, at 3,477,357 to 3,478,622 _015890 TX73_015895: TX73_015895 - acyl carrier protein, at 3,478,719 to 3,478,958 _015895 TX73_015900: TX73_015900 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 3,479,263 to 3,480,000 _015900 Position (kb) 3478 3479Strain fitness (log2 ratio) -1 0 1 2at 3478.623 kb on + strandat 3478.623 kb on + strandat 3478.623 kb on + strandat 3478.623 kb on + strandat 3478.631 kb on - strandat 3478.650 kb on + strandat 3478.658 kb on - strandat 3478.665 kb on + strandat 3478.695 kb on + strandat 3478.707 kb on - strandat 3478.707 kb on - strandat 3478.724 kb on - strandat 3479.008 kb on - strandat 3479.012 kb on - strandat 3479.012 kb on - strandat 3479.065 kb on - strandat 3479.119 kb on + strandat 3479.138 kb on - strandat 3479.166 kb on + strandat 3479.173 kb on + strandat 3479.196 kb on + strandat 3479.196 kb on - strandat 3479.203 kb on + strandat 3479.204 kb on - strandat 3479.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light
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3,478,623 + -1.3
3,478,623 + +0.2
3,478,623 + -0.2
3,478,623 + +0.3
3,478,631 - +0.1
3,478,650 + -0.3
3,478,658 - +0.1
3,478,665 + -0.5
3,478,695 + +0.9
3,478,707 - +2.1
3,478,707 - +1.6
3,478,724 - +0.7
3,479,008 - +0.8
3,479,012 - -0.9
3,479,012 - +0.3
3,479,065 - +0.2
3,479,119 + -0.1
3,479,138 - +0.4
3,479,166 + +0.1
3,479,173 + +0.2
3,479,196 + -0.4
3,479,196 - +0.2
3,479,203 + +0.3
3,479,204 - +0.7
3,479,230 - -0.6

Or see this region's nucleotide sequence