Experiment: PM with Formate and Sodium bicarbonate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002825 and TX73_002830 are separated by 94 nucleotides TX73_002830 and TX73_002835 are separated by 3 nucleotides TX73_002835 and TX73_002840 are separated by 182 nucleotides
TX73_002825: TX73_002825 - LrgB family protein, at 607,714 to 608,436
_002825
TX73_002830: TX73_002830 - hypothetical protein, at 608,531 to 608,995
_002830
TX73_002835: TX73_002835 - phospholipase, at 608,999 to 610,075
_002835
TX73_002840: TX73_002840 - AI-2E family transporter, at 610,258 to 611,418
_002840
Position (kb) 608
609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 608.002 kb on - strand, within TX73_002825 at 608.053 kb on - strand, within TX73_002825 at 608.068 kb on - strand, within TX73_002825 at 608.072 kb on + strand, within TX73_002825 at 608.075 kb on - strand, within TX73_002825 at 608.075 kb on - strand, within TX73_002825 at 608.076 kb on + strand, within TX73_002825 at 608.080 kb on - strand, within TX73_002825 at 608.094 kb on + strand, within TX73_002825 at 608.094 kb on + strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.102 kb on - strand, within TX73_002825 at 608.179 kb on - strand, within TX73_002825 at 608.198 kb on + strand, within TX73_002825 at 608.206 kb on - strand, within TX73_002825 at 608.227 kb on + strand, within TX73_002825 at 608.335 kb on + strand, within TX73_002825 at 608.342 kb on - strand, within TX73_002825 at 608.343 kb on - strand, within TX73_002825 at 608.371 kb on - strand at 608.383 kb on - strand at 608.383 kb on - strand at 608.388 kb on + strand at 608.390 kb on + strand at 608.390 kb on + strand at 608.391 kb on - strand at 608.393 kb on + strand at 608.396 kb on + strand at 608.428 kb on - strand at 608.464 kb on - strand at 608.475 kb on + strand at 608.501 kb on - strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.541 kb on + strand at 608.549 kb on - strand at 608.549 kb on - strand at 608.549 kb on - strand at 608.576 kb on + strand at 608.581 kb on + strand, within TX73_002830 at 608.589 kb on - strand, within TX73_002830 at 608.589 kb on - strand, within TX73_002830 at 608.594 kb on - strand, within TX73_002830 at 608.634 kb on - strand, within TX73_002830 at 608.648 kb on - strand, within TX73_002830 at 608.689 kb on - strand, within TX73_002830 at 608.726 kb on + strand, within TX73_002830 at 608.728 kb on + strand, within TX73_002830 at 608.734 kb on - strand, within TX73_002830 at 608.744 kb on - strand, within TX73_002830 at 608.746 kb on - strand, within TX73_002830 at 608.760 kb on + strand, within TX73_002830 at 608.765 kb on + strand, within TX73_002830 at 608.768 kb on + strand, within TX73_002830 at 608.779 kb on + strand, within TX73_002830 at 608.787 kb on - strand, within TX73_002830 at 608.787 kb on - strand, within TX73_002830 at 608.789 kb on + strand, within TX73_002830 at 608.795 kb on + strand, within TX73_002830 at 608.803 kb on - strand, within TX73_002830 at 608.833 kb on + strand, within TX73_002830 at 608.841 kb on - strand, within TX73_002830 at 608.876 kb on - strand, within TX73_002830 at 608.883 kb on + strand, within TX73_002830 at 608.972 kb on + strand at 608.983 kb on + strand at 608.989 kb on + strand at 608.999 kb on - strand at 609.023 kb on + strand at 609.023 kb on + strand at 609.031 kb on - strand at 609.031 kb on - strand at 609.041 kb on + strand at 609.059 kb on - strand at 609.102 kb on + strand at 609.110 kb on - strand, within TX73_002835 at 609.115 kb on - strand, within TX73_002835 at 609.126 kb on + strand, within TX73_002835 at 609.149 kb on + strand, within TX73_002835 at 609.163 kb on - strand, within TX73_002835 at 609.181 kb on - strand, within TX73_002835 at 609.199 kb on - strand, within TX73_002835 at 609.234 kb on - strand, within TX73_002835 at 609.258 kb on - strand, within TX73_002835 at 609.260 kb on + strand, within TX73_002835 at 609.268 kb on - strand, within TX73_002835 at 609.278 kb on + strand, within TX73_002835 at 609.278 kb on + strand, within TX73_002835 at 609.285 kb on + strand, within TX73_002835 at 609.291 kb on - strand, within TX73_002835 at 609.328 kb on + strand, within TX73_002835 at 609.368 kb on - strand, within TX73_002835 at 609.427 kb on - strand, within TX73_002835 at 609.505 kb on + strand, within TX73_002835 at 609.542 kb on + strand, within TX73_002835 at 609.548 kb on + strand, within TX73_002835 at 609.635 kb on + strand, within TX73_002835 at 609.635 kb on + strand, within TX73_002835 at 609.635 kb on + strand, within TX73_002835 at 609.643 kb on - strand, within TX73_002835 at 609.775 kb on - strand, within TX73_002835 at 609.775 kb on - strand, within TX73_002835 at 609.796 kb on - strand, within TX73_002835 at 609.809 kb on + strand, within TX73_002835 at 609.826 kb on + strand, within TX73_002835 at 609.837 kb on + strand, within TX73_002835 at 609.844 kb on - strand, within TX73_002835 at 609.861 kb on + strand, within TX73_002835 at 609.863 kb on + strand, within TX73_002835 at 609.868 kb on - strand, within TX73_002835 at 609.871 kb on - strand, within TX73_002835 at 609.881 kb on - strand, within TX73_002835 at 609.883 kb on - strand, within TX73_002835 at 609.927 kb on - strand, within TX73_002835 at 609.954 kb on + strand, within TX73_002835 at 609.962 kb on - strand, within TX73_002835 at 609.962 kb on - strand, within TX73_002835 at 609.982 kb on + strand at 610.050 kb on - strand at 610.075 kb on + strand at 610.083 kb on - strand at 610.091 kb on - strand at 610.114 kb on + strand at 610.114 kb on - strand at 610.116 kb on + strand at 610.173 kb on + strand at 610.180 kb on - strand at 610.200 kb on - strand at 610.206 kb on - strand at 610.218 kb on - strand at 610.251 kb on - strand at 610.286 kb on - strand at 610.304 kb on + strand at 610.312 kb on - strand at 610.322 kb on - strand at 610.333 kb on + strand at 610.335 kb on + strand at 610.338 kb on + strand at 610.343 kb on + strand at 610.346 kb on - strand at 610.346 kb on - strand at 610.346 kb on - strand at 610.348 kb on + strand at 610.348 kb on + strand at 610.356 kb on - strand at 610.356 kb on - strand at 610.356 kb on - strand at 610.358 kb on - strand at 610.358 kb on - strand at 610.384 kb on + strand, within TX73_002840 at 610.394 kb on - strand, within TX73_002840 at 610.399 kb on - strand, within TX73_002840 at 610.399 kb on - strand, within TX73_002840 at 610.435 kb on + strand, within TX73_002840 at 610.443 kb on - strand, within TX73_002840 at 610.493 kb on + strand, within TX73_002840 at 610.493 kb on + strand, within TX73_002840 at 610.493 kb on + strand, within TX73_002840 at 610.501 kb on - strand, within TX73_002840 at 610.501 kb on - strand, within TX73_002840 at 610.541 kb on - strand, within TX73_002840 at 610.555 kb on - strand, within TX73_002840 at 610.611 kb on + strand, within TX73_002840 at 610.664 kb on - strand, within TX73_002840 at 610.669 kb on + strand, within TX73_002840 at 610.669 kb on - strand, within TX73_002840 at 610.806 kb on + strand, within TX73_002840 at 610.829 kb on + strand, within TX73_002840 at 610.882 kb on + strand, within TX73_002840 at 610.907 kb on + strand, within TX73_002840 at 610.911 kb on + strand, within TX73_002840 at 610.963 kb on + strand, within TX73_002840 at 610.978 kb on + strand, within TX73_002840 at 611.065 kb on - strand, within TX73_002840 at 611.068 kb on + strand, within TX73_002840
Per-strain Table
Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light remove 608,002 - TX73_002825 0.40 -0.6 608,053 - TX73_002825 0.47 +0.2 608,068 - TX73_002825 0.49 +0.1 608,072 + TX73_002825 0.50 -0.8 608,075 - TX73_002825 0.50 -1.1 608,075 - TX73_002825 0.50 +0.2 608,076 + TX73_002825 0.50 -0.4 608,080 - TX73_002825 0.51 -1.2 608,094 + TX73_002825 0.53 +1.2 608,094 + TX73_002825 0.53 +0.0 608,102 - TX73_002825 0.54 -0.1 608,102 - TX73_002825 0.54 +0.1 608,102 - TX73_002825 0.54 -0.3 608,102 - TX73_002825 0.54 -1.1 608,179 - TX73_002825 0.64 -0.7 608,198 + TX73_002825 0.67 +0.5 608,206 - TX73_002825 0.68 -0.4 608,227 + TX73_002825 0.71 +0.3 608,335 + TX73_002825 0.86 +0.5 608,342 - TX73_002825 0.87 -0.2 608,343 - TX73_002825 0.87 -0.9 608,371 - +0.3 608,383 - -0.6 608,383 - +0.1 608,388 + -0.8 608,390 + +0.3 608,390 + +0.5 608,391 - -1.2 608,393 + -1.6 608,396 + -0.1 608,428 - -0.0 608,464 - +0.6 608,475 + -0.1 608,501 - -0.2 608,541 + +0.1 608,541 + +0.0 608,541 + -0.1 608,541 + -0.1 608,541 + +0.5 608,549 - +0.5 608,549 - +0.9 608,549 - -0.5 608,576 + -0.4 608,581 + TX73_002830 0.11 -0.6 608,589 - TX73_002830 0.12 +0.0 608,589 - TX73_002830 0.12 -0.0 608,594 - TX73_002830 0.14 -0.4 608,634 - TX73_002830 0.22 -0.2 608,648 - TX73_002830 0.25 -0.2 608,689 - TX73_002830 0.34 -0.1 608,726 + TX73_002830 0.42 +0.4 608,728 + TX73_002830 0.42 +0.3 608,734 - TX73_002830 0.44 -0.4 608,744 - TX73_002830 0.46 -0.6 608,746 - TX73_002830 0.46 -0.0 608,760 + TX73_002830 0.49 -1.5 608,765 + TX73_002830 0.50 +0.4 608,768 + TX73_002830 0.51 -0.2 608,779 + TX73_002830 0.53 -0.2 608,787 - TX73_002830 0.55 -0.4 608,787 - TX73_002830 0.55 -0.4 608,789 + TX73_002830 0.55 -0.2 608,795 + TX73_002830 0.57 -0.6 608,803 - TX73_002830 0.58 -0.8 608,833 + TX73_002830 0.65 +0.5 608,841 - TX73_002830 0.67 -0.6 608,876 - TX73_002830 0.74 -0.0 608,883 + TX73_002830 0.76 -0.8 608,972 + +0.1 608,983 + -0.2 608,989 + -0.2 608,999 - +0.1 609,023 + -1.4 609,023 + -0.0 609,031 - -0.3 609,031 - -0.4 609,041 + +0.0 609,059 - -0.2 609,102 + -0.2 609,110 - TX73_002835 0.10 +4.5 609,115 - TX73_002835 0.11 -0.7 609,126 + TX73_002835 0.12 +0.3 609,149 + TX73_002835 0.14 +0.0 609,163 - TX73_002835 0.15 -1.0 609,181 - TX73_002835 0.17 -0.6 609,199 - TX73_002835 0.19 +0.2 609,234 - TX73_002835 0.22 -1.1 609,258 - TX73_002835 0.24 -0.1 609,260 + TX73_002835 0.24 +0.5 609,268 - TX73_002835 0.25 -2.0 609,278 + TX73_002835 0.26 +0.5 609,278 + TX73_002835 0.26 -2.1 609,285 + TX73_002835 0.27 +0.3 609,291 - TX73_002835 0.27 -0.1 609,328 + TX73_002835 0.31 -0.6 609,368 - TX73_002835 0.34 -0.0 609,427 - TX73_002835 0.40 +0.6 609,505 + TX73_002835 0.47 -0.2 609,542 + TX73_002835 0.50 -1.1 609,548 + TX73_002835 0.51 -0.8 609,635 + TX73_002835 0.59 +0.2 609,635 + TX73_002835 0.59 -1.2 609,635 + TX73_002835 0.59 -0.1 609,643 - TX73_002835 0.60 +0.1 609,775 - TX73_002835 0.72 +0.7 609,775 - TX73_002835 0.72 -0.4 609,796 - TX73_002835 0.74 -0.1 609,809 + TX73_002835 0.75 -0.9 609,826 + TX73_002835 0.77 -0.3 609,837 + TX73_002835 0.78 -0.6 609,844 - TX73_002835 0.78 -0.3 609,861 + TX73_002835 0.80 +0.0 609,863 + TX73_002835 0.80 -0.4 609,868 - TX73_002835 0.81 +0.0 609,871 - TX73_002835 0.81 +0.3 609,881 - TX73_002835 0.82 +0.4 609,883 - TX73_002835 0.82 +0.4 609,927 - TX73_002835 0.86 -0.3 609,954 + TX73_002835 0.89 -0.3 609,962 - TX73_002835 0.89 +0.7 609,962 - TX73_002835 0.89 +0.1 609,982 + +0.3 610,050 - -0.2 610,075 + +0.1 610,083 - +0.2 610,091 - +0.4 610,114 + -0.3 610,114 - -0.3 610,116 + -0.0 610,173 + +0.3 610,180 - -0.1 610,200 - +0.1 610,206 - -0.6 610,218 - -0.4 610,251 - -0.5 610,286 - +0.3 610,304 + +0.2 610,312 - -0.3 610,322 - +0.4 610,333 + +0.3 610,335 + -0.5 610,338 + -0.2 610,343 + -0.5 610,346 - -0.4 610,346 - +0.0 610,346 - -1.5 610,348 + -0.7 610,348 + +0.4 610,356 - +0.3 610,356 - -0.3 610,356 - +0.5 610,358 - -0.1 610,358 - -0.6 610,384 + TX73_002840 0.11 -0.0 610,394 - TX73_002840 0.12 +0.7 610,399 - TX73_002840 0.12 -0.2 610,399 - TX73_002840 0.12 +0.3 610,435 + TX73_002840 0.15 +0.9 610,443 - TX73_002840 0.16 +0.2 610,493 + TX73_002840 0.20 +0.0 610,493 + TX73_002840 0.20 -0.4 610,493 + TX73_002840 0.20 -0.2 610,501 - TX73_002840 0.21 +0.2 610,501 - TX73_002840 0.21 -0.2 610,541 - TX73_002840 0.24 +0.3 610,555 - TX73_002840 0.26 +0.4 610,611 + TX73_002840 0.30 -0.8 610,664 - TX73_002840 0.35 -0.2 610,669 + TX73_002840 0.35 -0.5 610,669 - TX73_002840 0.35 -0.4 610,806 + TX73_002840 0.47 -0.1 610,829 + TX73_002840 0.49 +0.1 610,882 + TX73_002840 0.54 -0.0 610,907 + TX73_002840 0.56 -0.0 610,911 + TX73_002840 0.56 -0.4 610,963 + TX73_002840 0.61 -0.4 610,978 + TX73_002840 0.62 -0.4 611,065 - TX73_002840 0.70 +0.7 611,068 + TX73_002840 0.70 +0.2
Or see this region's nucleotide sequence