Experiment: PM with Formate and Sodium bicarbonate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002730 and TX73_002735 are separated by 16 nucleotides TX73_002735 and TX73_002740 are separated by 238 nucleotides TX73_002740 and TX73_002745 are separated by 130 nucleotides
TX73_002730: TX73_002730 - hypothetical protein, at 586,948 to 587,580
_002730
TX73_002735: TX73_002735 - hypothetical protein, at 587,597 to 587,911
_002735
TX73_002740: TX73_002740 - bifunctional diguanylate cyclase/phosphodiesterase, at 588,150 to 589,892
_002740
TX73_002745: TX73_002745 - polyhydroxyalkanoate synthesis repressor PhaR, at 590,023 to 590,613
_002745
Position (kb) 588
589
590 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 587.151 kb on + strand, within TX73_002730 at 587.154 kb on - strand, within TX73_002730 at 587.154 kb on - strand, within TX73_002730 at 587.156 kb on + strand, within TX73_002730 at 587.159 kb on + strand, within TX73_002730 at 587.163 kb on + strand, within TX73_002730 at 587.229 kb on + strand, within TX73_002730 at 587.235 kb on - strand, within TX73_002730 at 587.249 kb on + strand, within TX73_002730 at 587.249 kb on + strand, within TX73_002730 at 587.267 kb on - strand, within TX73_002730 at 587.267 kb on - strand, within TX73_002730 at 587.307 kb on - strand, within TX73_002730 at 587.348 kb on + strand, within TX73_002730 at 587.356 kb on - strand, within TX73_002730 at 587.358 kb on - strand, within TX73_002730 at 587.370 kb on - strand, within TX73_002730 at 587.389 kb on - strand, within TX73_002730 at 587.399 kb on - strand, within TX73_002730 at 587.402 kb on - strand, within TX73_002730 at 587.412 kb on + strand, within TX73_002730 at 587.427 kb on - strand, within TX73_002730 at 587.456 kb on - strand, within TX73_002730 at 587.464 kb on + strand, within TX73_002730 at 587.472 kb on - strand, within TX73_002730 at 587.472 kb on - strand, within TX73_002730 at 587.475 kb on - strand, within TX73_002730 at 587.480 kb on + strand, within TX73_002730 at 587.481 kb on - strand, within TX73_002730 at 587.490 kb on + strand, within TX73_002730 at 587.501 kb on + strand, within TX73_002730 at 587.519 kb on + strand at 587.519 kb on + strand at 587.527 kb on - strand at 587.527 kb on - strand at 587.527 kb on - strand at 587.553 kb on + strand at 587.556 kb on - strand at 587.587 kb on + strand at 587.587 kb on - strand at 587.587 kb on - strand at 587.593 kb on - strand at 587.595 kb on - strand at 587.613 kb on + strand at 587.613 kb on + strand at 587.613 kb on + strand at 587.637 kb on + strand, within TX73_002735 at 587.637 kb on + strand, within TX73_002735 at 587.637 kb on + strand, within TX73_002735 at 587.637 kb on + strand, within TX73_002735 at 587.643 kb on - strand, within TX73_002735 at 587.645 kb on - strand, within TX73_002735 at 587.645 kb on - strand, within TX73_002735 at 587.645 kb on - strand, within TX73_002735 at 587.648 kb on + strand, within TX73_002735 at 587.670 kb on + strand, within TX73_002735 at 587.670 kb on + strand, within TX73_002735 at 587.678 kb on - strand, within TX73_002735 at 587.678 kb on - strand, within TX73_002735 at 587.683 kb on - strand, within TX73_002735 at 587.683 kb on - strand, within TX73_002735 at 587.688 kb on - strand, within TX73_002735 at 587.688 kb on - strand, within TX73_002735 at 587.708 kb on + strand, within TX73_002735 at 587.716 kb on - strand, within TX73_002735 at 587.720 kb on + strand, within TX73_002735 at 587.763 kb on + strand, within TX73_002735 at 587.771 kb on - strand, within TX73_002735 at 587.773 kb on + strand, within TX73_002735 at 587.781 kb on + strand, within TX73_002735 at 587.781 kb on + strand, within TX73_002735 at 587.781 kb on - strand, within TX73_002735 at 587.789 kb on - strand, within TX73_002735 at 587.795 kb on + strand, within TX73_002735 at 587.806 kb on + strand, within TX73_002735 at 587.808 kb on - strand, within TX73_002735 at 587.808 kb on - strand, within TX73_002735 at 587.810 kb on + strand, within TX73_002735 at 587.810 kb on + strand, within TX73_002735 at 587.849 kb on - strand, within TX73_002735 at 587.860 kb on + strand, within TX73_002735 at 587.867 kb on - strand, within TX73_002735 at 587.868 kb on - strand, within TX73_002735 at 587.870 kb on + strand, within TX73_002735 at 587.871 kb on + strand, within TX73_002735 at 587.871 kb on + strand, within TX73_002735 at 587.871 kb on + strand, within TX73_002735 at 587.895 kb on + strand at 587.895 kb on + strand at 587.895 kb on + strand at 587.902 kb on - strand at 587.903 kb on - strand at 587.903 kb on - strand at 587.903 kb on - strand at 587.920 kb on - strand at 587.945 kb on + strand at 587.947 kb on + strand at 587.947 kb on + strand at 587.947 kb on + strand at 587.951 kb on + strand at 587.954 kb on - strand at 587.954 kb on - strand at 587.955 kb on - strand at 587.955 kb on - strand at 587.967 kb on - strand at 587.985 kb on - strand at 587.998 kb on + strand at 587.999 kb on - strand at 587.999 kb on - strand at 588.000 kb on - strand at 588.005 kb on - strand at 588.006 kb on - strand at 588.006 kb on - strand at 588.006 kb on - strand at 588.006 kb on - strand at 588.006 kb on - strand at 588.006 kb on - strand at 588.007 kb on + strand at 588.009 kb on + strand at 588.017 kb on - strand at 588.017 kb on - strand at 588.017 kb on - strand at 588.018 kb on + strand at 588.021 kb on - strand at 588.023 kb on + strand at 588.080 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on + strand at 588.088 kb on - strand at 588.093 kb on + strand at 588.096 kb on - strand at 588.096 kb on - strand at 588.096 kb on - strand at 588.096 kb on - strand at 588.098 kb on + strand at 588.098 kb on + strand at 588.098 kb on + strand at 588.098 kb on + strand at 588.098 kb on + strand at 588.098 kb on + strand at 588.103 kb on + strand at 588.103 kb on + strand at 588.103 kb on + strand at 588.103 kb on + strand at 588.103 kb on + strand at 588.103 kb on + strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.106 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.113 kb on + strand at 588.114 kb on - strand at 588.121 kb on + strand at 588.129 kb on - strand at 588.140 kb on - strand at 588.142 kb on + strand at 588.144 kb on + strand at 588.155 kb on - strand at 588.165 kb on + strand at 588.168 kb on + strand at 588.171 kb on - strand at 588.171 kb on - strand at 588.173 kb on + strand at 588.181 kb on - strand at 588.184 kb on - strand at 588.184 kb on - strand at 588.186 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.191 kb on + strand at 588.201 kb on - strand at 588.227 kb on - strand at 588.230 kb on + strand at 588.232 kb on + strand at 588.245 kb on + strand at 588.253 kb on - strand at 588.259 kb on + strand at 588.268 kb on + strand at 588.272 kb on + strand at 588.272 kb on + strand at 588.272 kb on + strand at 588.272 kb on + strand at 588.272 kb on + strand at 588.272 kb on + strand at 588.275 kb on - strand at 588.280 kb on - strand at 588.280 kb on - strand at 588.280 kb on - strand at 588.308 kb on + strand at 588.340 kb on + strand, within TX73_002740 at 588.341 kb on + strand, within TX73_002740 at 588.351 kb on + strand, within TX73_002740 at 588.351 kb on + strand, within TX73_002740 at 588.351 kb on + strand, within TX73_002740 at 588.351 kb on - strand, within TX73_002740 at 588.353 kb on + strand, within TX73_002740 at 588.353 kb on + strand, within TX73_002740 at 588.361 kb on - strand, within TX73_002740 at 588.371 kb on + strand, within TX73_002740 at 588.379 kb on - strand, within TX73_002740 at 588.379 kb on - strand, within TX73_002740 at 588.387 kb on + strand, within TX73_002740 at 588.387 kb on + strand, within TX73_002740 at 588.395 kb on - strand, within TX73_002740 at 588.395 kb on - strand, within TX73_002740 at 588.405 kb on - strand, within TX73_002740 at 588.407 kb on + strand, within TX73_002740 at 588.415 kb on - strand, within TX73_002740 at 588.419 kb on - strand, within TX73_002740 at 588.452 kb on + strand, within TX73_002740 at 588.452 kb on + strand, within TX73_002740 at 588.460 kb on - strand, within TX73_002740 at 588.460 kb on - strand, within TX73_002740 at 588.460 kb on - strand, within TX73_002740 at 588.468 kb on + strand, within TX73_002740 at 588.478 kb on + strand, within TX73_002740 at 588.507 kb on + strand, within TX73_002740 at 588.525 kb on + strand, within TX73_002740 at 588.530 kb on + strand, within TX73_002740 at 588.530 kb on + strand, within TX73_002740 at 588.530 kb on + strand, within TX73_002740 at 588.560 kb on + strand, within TX73_002740 at 588.566 kb on + strand, within TX73_002740 at 588.574 kb on - strand, within TX73_002740 at 588.582 kb on + strand, within TX73_002740 at 588.584 kb on + strand, within TX73_002740 at 588.633 kb on + strand, within TX73_002740 at 588.635 kb on + strand, within TX73_002740 at 588.635 kb on + strand, within TX73_002740 at 588.641 kb on - strand, within TX73_002740 at 588.641 kb on - strand, within TX73_002740 at 588.643 kb on - strand, within TX73_002740 at 588.687 kb on + strand, within TX73_002740 at 588.690 kb on - strand, within TX73_002740 at 588.690 kb on - strand, within TX73_002740 at 588.709 kb on + strand, within TX73_002740 at 588.717 kb on + strand, within TX73_002740 at 588.723 kb on - strand, within TX73_002740 at 588.849 kb on - strand, within TX73_002740 at 588.860 kb on - strand, within TX73_002740 at 588.878 kb on - strand, within TX73_002740 at 588.880 kb on + strand, within TX73_002740 at 588.886 kb on - strand, within TX73_002740 at 588.888 kb on - strand, within TX73_002740 at 588.898 kb on - strand, within TX73_002740 at 588.933 kb on + strand, within TX73_002740 at 588.948 kb on + strand, within TX73_002740 at 588.969 kb on + strand, within TX73_002740 at 589.012 kb on + strand, within TX73_002740 at 589.019 kb on - strand, within TX73_002740 at 589.021 kb on + strand, within TX73_002740 at 589.040 kb on - strand, within TX73_002740 at 589.056 kb on - strand, within TX73_002740 at 589.063 kb on - strand, within TX73_002740 at 589.101 kb on + strand, within TX73_002740 at 589.109 kb on - strand, within TX73_002740 at 589.121 kb on - strand, within TX73_002740 at 589.126 kb on + strand, within TX73_002740 at 589.134 kb on - strand, within TX73_002740 at 589.136 kb on - strand, within TX73_002740 at 589.167 kb on + strand, within TX73_002740 at 589.170 kb on - strand, within TX73_002740 at 589.175 kb on - strand, within TX73_002740 at 589.175 kb on - strand, within TX73_002740 at 589.180 kb on - strand, within TX73_002740 at 589.190 kb on - strand, within TX73_002740 at 589.195 kb on - strand, within TX73_002740 at 589.195 kb on - strand, within TX73_002740 at 589.243 kb on - strand, within TX73_002740 at 589.256 kb on + strand, within TX73_002740 at 589.282 kb on - strand, within TX73_002740 at 589.295 kb on + strand, within TX73_002740 at 589.302 kb on - strand, within TX73_002740 at 589.318 kb on + strand, within TX73_002740 at 589.327 kb on + strand, within TX73_002740 at 589.329 kb on + strand, within TX73_002740 at 589.335 kb on - strand, within TX73_002740 at 589.341 kb on - strand, within TX73_002740 at 589.341 kb on - strand, within TX73_002740 at 589.386 kb on - strand, within TX73_002740 at 589.397 kb on - strand, within TX73_002740 at 589.421 kb on - strand, within TX73_002740 at 589.426 kb on + strand, within TX73_002740 at 589.493 kb on - strand, within TX73_002740 at 589.496 kb on + strand, within TX73_002740 at 589.507 kb on + strand, within TX73_002740 at 589.509 kb on - strand, within TX73_002740 at 589.509 kb on - strand, within TX73_002740 at 589.509 kb on - strand, within TX73_002740 at 589.518 kb on - strand, within TX73_002740 at 589.520 kb on + strand, within TX73_002740 at 589.520 kb on - strand, within TX73_002740 at 589.528 kb on - strand, within TX73_002740 at 589.538 kb on + strand, within TX73_002740 at 589.538 kb on + strand, within TX73_002740 at 589.538 kb on + strand, within TX73_002740 at 589.546 kb on - strand, within TX73_002740 at 589.554 kb on - strand, within TX73_002740 at 589.592 kb on - strand, within TX73_002740 at 589.609 kb on - strand, within TX73_002740 at 589.650 kb on + strand, within TX73_002740 at 589.671 kb on + strand, within TX73_002740 at 589.671 kb on + strand, within TX73_002740 at 589.671 kb on + strand, within TX73_002740 at 589.679 kb on - strand, within TX73_002740 at 589.679 kb on - strand, within TX73_002740 at 589.704 kb on + strand, within TX73_002740 at 589.744 kb on - strand at 589.746 kb on + strand at 589.752 kb on + strand at 589.754 kb on - strand at 589.777 kb on - strand at 589.797 kb on + strand at 589.823 kb on - strand at 589.824 kb on + strand at 589.896 kb on + strand at 589.904 kb on - strand at 589.904 kb on - strand at 589.909 kb on + strand at 589.909 kb on + strand at 589.947 kb on + strand at 589.952 kb on - strand at 589.955 kb on - strand at 589.965 kb on - strand at 589.974 kb on + strand at 589.974 kb on + strand at 589.974 kb on + strand at 589.982 kb on - strand at 589.992 kb on - strand at 590.000 kb on + strand at 590.007 kb on + strand at 590.048 kb on + strand at 590.051 kb on - strand at 590.107 kb on - strand, within TX73_002745 at 590.133 kb on - strand, within TX73_002745 at 590.136 kb on + strand, within TX73_002745 at 590.222 kb on + strand, within TX73_002745 at 590.230 kb on - strand, within TX73_002745 at 590.230 kb on - strand, within TX73_002745 at 590.250 kb on + strand, within TX73_002745 at 590.252 kb on - strand, within TX73_002745 at 590.334 kb on - strand, within TX73_002745 at 590.376 kb on + strand, within TX73_002745 at 590.381 kb on - strand, within TX73_002745 at 590.399 kb on - strand, within TX73_002745 at 590.413 kb on + strand, within TX73_002745 at 590.416 kb on - strand, within TX73_002745 at 590.416 kb on - strand, within TX73_002745 at 590.426 kb on + strand, within TX73_002745 at 590.432 kb on + strand, within TX73_002745 at 590.434 kb on - strand, within TX73_002745 at 590.451 kb on + strand, within TX73_002745 at 590.468 kb on + strand, within TX73_002745 at 590.491 kb on - strand, within TX73_002745 at 590.509 kb on - strand, within TX73_002745 at 590.529 kb on - strand, within TX73_002745 at 590.540 kb on + strand, within TX73_002745 at 590.543 kb on - strand, within TX73_002745 at 590.553 kb on - strand, within TX73_002745 at 590.554 kb on + strand, within TX73_002745 at 590.554 kb on + strand, within TX73_002745 at 590.554 kb on + strand, within TX73_002745 at 590.554 kb on + strand, within TX73_002745 at 590.554 kb on + strand, within TX73_002745 at 590.562 kb on - strand at 590.562 kb on - strand at 590.562 kb on - strand at 590.562 kb on - strand at 590.562 kb on - strand at 590.562 kb on - strand at 590.562 kb on - strand at 590.630 kb on - strand at 590.632 kb on + strand at 590.633 kb on - strand at 590.735 kb on + strand at 590.740 kb on + strand at 590.740 kb on + strand at 590.842 kb on + strand at 590.844 kb on - strand at 590.855 kb on + strand at 590.861 kb on - strand at 590.863 kb on - strand at 590.863 kb on - strand at 590.863 kb on - strand at 590.885 kb on + strand at 590.888 kb on - strand at 590.888 kb on - strand at 590.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light remove 587,151 + TX73_002730 0.32 -0.4 587,154 - TX73_002730 0.33 -0.2 587,154 - TX73_002730 0.33 -0.2 587,156 + TX73_002730 0.33 +0.2 587,159 + TX73_002730 0.33 -0.4 587,163 + TX73_002730 0.34 +0.3 587,229 + TX73_002730 0.44 +0.3 587,235 - TX73_002730 0.45 -0.2 587,249 + TX73_002730 0.48 +0.2 587,249 + TX73_002730 0.48 +0.3 587,267 - TX73_002730 0.50 -0.0 587,267 - TX73_002730 0.50 +0.1 587,307 - TX73_002730 0.57 -0.6 587,348 + TX73_002730 0.63 -0.6 587,356 - TX73_002730 0.64 -0.2 587,358 - TX73_002730 0.65 -0.0 587,370 - TX73_002730 0.67 -0.5 587,389 - TX73_002730 0.70 -0.2 587,399 - TX73_002730 0.71 -0.2 587,402 - TX73_002730 0.72 -0.1 587,412 + TX73_002730 0.73 -0.2 587,427 - TX73_002730 0.76 -0.6 587,456 - TX73_002730 0.80 -0.1 587,464 + TX73_002730 0.82 +1.0 587,472 - TX73_002730 0.83 -1.3 587,472 - TX73_002730 0.83 -0.9 587,475 - TX73_002730 0.83 -0.5 587,480 + TX73_002730 0.84 -0.7 587,481 - TX73_002730 0.84 -0.0 587,490 + TX73_002730 0.86 +0.2 587,501 + TX73_002730 0.87 -1.3 587,519 + +0.3 587,519 + -0.0 587,527 - +0.0 587,527 - +1.2 587,527 - +0.0 587,553 + -0.6 587,556 - +0.1 587,587 + +0.0 587,587 - +0.3 587,587 - +0.7 587,593 - -0.7 587,595 - +0.4 587,613 + +0.0 587,613 + +0.5 587,613 + -0.5 587,637 + TX73_002735 0.13 +0.2 587,637 + TX73_002735 0.13 -0.9 587,637 + TX73_002735 0.13 +0.8 587,637 + TX73_002735 0.13 -0.3 587,643 - TX73_002735 0.15 -0.3 587,645 - TX73_002735 0.15 +0.5 587,645 - TX73_002735 0.15 +0.0 587,645 - TX73_002735 0.15 -0.1 587,648 + TX73_002735 0.16 -0.9 587,670 + TX73_002735 0.23 +1.1 587,670 + TX73_002735 0.23 +0.0 587,678 - TX73_002735 0.26 -0.1 587,678 - TX73_002735 0.26 -0.6 587,683 - TX73_002735 0.27 -0.1 587,683 - TX73_002735 0.27 -0.3 587,688 - TX73_002735 0.29 -0.2 587,688 - TX73_002735 0.29 -0.2 587,708 + TX73_002735 0.35 +0.9 587,716 - TX73_002735 0.38 -0.3 587,720 + TX73_002735 0.39 -0.9 587,763 + TX73_002735 0.53 +0.7 587,771 - TX73_002735 0.55 -0.1 587,773 + TX73_002735 0.56 +0.1 587,781 + TX73_002735 0.58 +0.2 587,781 + TX73_002735 0.58 -0.1 587,781 - TX73_002735 0.58 -0.4 587,789 - TX73_002735 0.61 +0.1 587,795 + TX73_002735 0.63 +0.8 587,806 + TX73_002735 0.66 -0.1 587,808 - TX73_002735 0.67 -0.1 587,808 - TX73_002735 0.67 -0.7 587,810 + TX73_002735 0.68 -0.6 587,810 + TX73_002735 0.68 -0.1 587,849 - TX73_002735 0.80 -0.6 587,860 + TX73_002735 0.83 -0.4 587,867 - TX73_002735 0.86 -1.0 587,868 - TX73_002735 0.86 +0.7 587,870 + TX73_002735 0.87 -1.1 587,871 + TX73_002735 0.87 +0.8 587,871 + TX73_002735 0.87 -0.3 587,871 + TX73_002735 0.87 +0.0 587,895 + +0.1 587,895 + -0.1 587,895 + +0.2 587,902 - +0.4 587,903 - -0.3 587,903 - +1.3 587,903 - -0.1 587,920 - +0.6 587,945 + -1.3 587,947 + -0.3 587,947 + +0.1 587,947 + +0.1 587,951 + -0.3 587,954 - -0.4 587,954 - +0.0 587,955 - -0.4 587,955 - -0.3 587,967 - -0.7 587,985 - -0.1 587,998 + +0.1 587,999 - +0.5 587,999 - +0.2 588,000 - -0.5 588,005 - -0.3 588,006 - +0.5 588,006 - +0.3 588,006 - -0.2 588,006 - -0.3 588,006 - -0.4 588,006 - -0.3 588,007 + -0.3 588,009 + +0.3 588,017 - +0.1 588,017 - +0.8 588,017 - +0.6 588,018 + +0.2 588,021 - -0.1 588,023 + +0.2 588,080 + -0.4 588,088 + -1.5 588,088 + -0.3 588,088 + -0.6 588,088 + -0.2 588,088 + -0.0 588,088 + +0.6 588,088 + +0.2 588,088 - -0.4 588,093 + -0.0 588,096 - -0.5 588,096 - -0.5 588,096 - +0.7 588,096 - -1.4 588,098 + -0.6 588,098 + +0.4 588,098 + -0.5 588,098 + -0.4 588,098 + -1.0 588,098 + -0.7 588,103 + +0.4 588,103 + -1.1 588,103 + -0.6 588,103 + -0.2 588,103 + -0.1 588,103 + -0.2 588,106 - +0.4 588,106 - -0.1 588,106 - +0.1 588,106 - +0.0 588,106 - +0.1 588,106 - -0.0 588,106 - -0.1 588,111 - -0.7 588,111 - +0.7 588,111 - +0.4 588,111 - +0.4 588,111 - -0.3 588,111 - -0.2 588,113 + -0.3 588,114 - -0.2 588,121 + +0.9 588,129 - -0.4 588,140 - -0.0 588,142 + +0.6 588,144 + -0.4 588,155 - +0.6 588,165 + -0.2 588,168 + -0.4 588,171 - -0.5 588,171 - -0.2 588,173 + +0.0 588,181 - -0.8 588,184 - +0.4 588,184 - -0.0 588,186 + +0.2 588,191 + +0.3 588,191 + +0.3 588,191 + +0.0 588,191 + +0.2 588,191 + +0.3 588,191 + +0.7 588,191 + +0.1 588,191 + -0.7 588,201 - 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Or see this region's nucleotide sequence